RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 USP6P35125 1406 aa13.16□□□□□ -0.3
LDLR-211ENST00000560173 SLC24A1O60721 1099 aa13.16□□□□□ -0.3
LDLR-211ENST00000560173 ADAMTS2O95450 1211 aa13.16□□□□□ -0.3
LDLR-211ENST00000560173 LMOD2Q6P5Q4 547 aa13.16□□□□□ -0.3
LDLR-211ENST00000560173 BRD4O60885 1362 aaPredicted RBP13.16□□□□□ -0.3
LDLR-211ENST00000560173 ABCA3Q99758 1704 aa13.16□□□□□ -0.3
LDLR-211ENST00000560173 PAK3O75914 559 aaPredicted RBP13.15□□□□□ -0.3
LDLR-211ENST00000560173 CPSF1Q10570 1443 aaKnown RBP13.14□□□□□ -0.31
LDLR-211ENST00000560173 SSH2Q76I76 1423 aa13.14□□□□□ -0.31
LDLR-211ENST00000560173 RBM6P78332 1123 aaKnown RBP13.14□□□□□ -0.31
LDLR-211ENST00000560173 CABLES1Q8TDN4 633 aa13.14□□□□□ -0.31
LDLR-211ENST00000560173 C8orf37Q96NL8 207 aa13.14□□□□□ -0.31
LDLR-211ENST00000560173 CD163L1Q9NR16 1453 aa13.14□□□□□ -0.31
LDLR-211ENST00000560173 EP400Q96L91 3159 aa13.13□□□□□ -0.31
LDLR-211ENST00000560173 AKAP12Q02952 1782 aa13.13□□□□□ -0.31
LDLR-211ENST00000560173 TMF1P82094 1093 aa13.13□□□□□ -0.31
LDLR-211ENST00000560173 QTRT2Q9H974 415 aaKnown RBP13.13□□□□□ -0.31
LDLR-211ENST00000560173 CRYBG1Q9Y4K1 1723 aa13.13□□□□□ -0.31
LDLR-211ENST00000560173 NRKQ7Z2Y5 1582 aa13.12□□□□□ -0.31
LDLR-211ENST00000560173 NINLQ9Y2I6 1382 aa13.12□□□□□ -0.31
LDLR-211ENST00000560173 EIF4G2P78344 907 aaKnown RBP eCLIP13.12□□□□□ -0.31
LDLR-211ENST00000560173 MARF1Q9Y4F3 1742 aaKnown RBP13.12□□□□□ -0.31
LDLR-211ENST00000560173 MON2Q7Z3U7 1717 aa13.11□□□□□ -0.31
LDLR-211ENST00000560173 PLEKHG5O94827 1062 aa13.11□□□□□ -0.31
LDLR-211ENST00000560173 HSPA5P11021 654 aaKnown RBP13.11□□□□□ -0.31
LDLR-211ENST00000560173 TMC1Q8TDI8 760 aa13.11□□□□□ -0.31
LDLR-211ENST00000560173 NGLY1Q96IV0 654 aa13.11□□□□□ -0.31
LDLR-211ENST00000560173 ZNF692Q9BU19 519 aaPredicted RBP13.11□□□□□ -0.31
LDLR-211ENST00000560173 SLC12A5Q9H2X9 1139 aa13.11□□□□□ -0.31
LDLR-211ENST00000560173 KTN1Q86UP2 1357 aaKnown RBP13.1□□□□□ -0.31
LDLR-211ENST00000560173 HAP1P54257 671 aaPredicted RBP13.1□□□□□ -0.31
LDLR-211ENST00000560173 NUTM2GQ5VZR2 741 aa13.1□□□□□ -0.31
LDLR-211ENST00000560173 FNBP4Q8N3X1 1017 aaPredicted RBP13.1□□□□□ -0.31
LDLR-211ENST00000560173 ABTB2Q8N961 1025 aa13.1□□□□□ -0.31
LDLR-211ENST00000560173 ZRANB1Q9UGI0 708 aa13.1□□□□□ -0.31
LDLR-211ENST00000560173 USP19O94966 1318 aa13.1□□□□□ -0.31
LDLR-211ENST00000560173 TTC21BQ7Z4L5 1316 aa13.1□□□□□ -0.31
LDLR-211ENST00000560173 PHRF1Q9P1Y6 1649 aaKnown RBP13.1□□□□□ -0.31
LDLR-211ENST00000560173 A0A1W2PP64 1363 aa13.09□□□□□ -0.31
LDLR-211ENST00000560173 PIK3C2AO00443 1686 aa13.09□□□□□ -0.31
LDLR-211ENST00000560173 CDCA8Q53HL2 280 aa13.09□□□□□ -0.31
LDLR-211ENST00000560173 SLIT2O94813 1529 aa13.08□□□□□ -0.31
LDLR-211ENST00000560173 ZEB1P37275 1124 aaPredicted RBP13.08□□□□□ -0.32
LDLR-211ENST00000560173 HDGFL2Q7Z4V5 671 aaPredicted RBP13.08□□□□□ -0.32
LDLR-211ENST00000560173 TERF2IPQ9NYB0 399 aa13.08□□□□□ -0.32
LDLR-211ENST00000560173 BCL9LQ86UU0 1499 aa13.08□□□□□ -0.32
LDLR-211ENST00000560173 TTC21AQ8NDW8 1320 aa13.08□□□□□ -0.32
LDLR-211ENST00000560173 EDC4Q6P2E9 1401 aaKnown RBP13.07□□□□□ -0.32
LDLR-211ENST00000560173 NLRP13Q86W25 1043 aa13.07□□□□□ -0.32
LDLR-211ENST00000560173 USP21Q9UK80 565 aa13.07□□□□□ -0.32
LDLR-211ENST00000560173 SLIT3O75094 1523 aa13.07□□□□□ -0.32
LDLR-211ENST00000560173 ANKRD36BQ8N2N9 1353 aa13.07□□□□□ -0.32
LDLR-211ENST00000560173 ATRNO75882 1429 aa13.06□□□□□ -0.32
LDLR-211ENST00000560173 MYOM1P52179 1685 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 PLCH1Q4KWH8 1693 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.05□□□□□ -0.32
LDLR-211ENST00000560173 FAM83GA6ND36 823 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 NLRP6P59044 892 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 KIAA0232Q92628 1395 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 NWD2Q9ULI1 1742 aa13.05□□□□□ -0.32
LDLR-211ENST00000560173 COL14A1Q05707 1796 aaKnown RBP13.04□□□□□ -0.32
LDLR-211ENST00000560173 PRDM11Q9NQV5 511 aa13.04□□□□□ -0.32
LDLR-211ENST00000560173 USP54Q70EL1 1684 aa13.04□□□□□ -0.32
LDLR-211ENST00000560173 CPDO75976 1380 aa13.04□□□□□ -0.32
LDLR-211ENST00000560173 USP31Q70CQ4 1352 aa13.04□□□□□ -0.32
LDLR-211ENST00000560173 GCP02774 474 aa13.03□□□□□ -0.32
LDLR-211ENST00000560173 NME9Q86XW9 330 aa13.03□□□□□ -0.32
LDLR-211ENST00000560173 UNC5CLQ8IV45 518 aa13.03□□□□□ -0.32
LDLR-211ENST00000560173 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.03□□□□□ -0.32
LDLR-211ENST00000560173 TRPC5Q9UL62 973 aaPredicted RBP13.03□□□□□ -0.32
LDLR-211ENST00000560173 NRAPQ86VF7 1730 aa13.02□□□□□ -0.32
LDLR-211ENST00000560173 ZC3H6P61129 1189 aaKnown RBP13.02□□□□□ -0.33
LDLR-211ENST00000560173 LRP5O75197 1615 aa13.02□□□□□ -0.33
LDLR-211ENST00000560173 BTG4Q9NY30 223 aa13.01□□□□□ -0.33
LDLR-211ENST00000560173 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
LDLR-211ENST00000560173 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
LDLR-211ENST00000560173 NFAT5O94916 1531 aa13.01□□□□□ -0.33
LDLR-211ENST00000560173 LMO7Q8WWI1 1683 aa13□□□□□ -0.33
LDLR-211ENST00000560173 C11orf95C9JLR9 678 aaPredicted RBP13□□□□□ -0.33
LDLR-211ENST00000560173 CHRNA2Q15822 529 aa13□□□□□ -0.33
LDLR-211ENST00000560173 CCDC125Q86Z20 511 aa13□□□□□ -0.33
LDLR-211ENST00000560173 VPS72Q15906 364 aa12.99□□□□□ -0.33
LDLR-211ENST00000560173 KCNH5Q8NCM2 988 aa12.99□□□□□ -0.33
LDLR-211ENST00000560173 POLR3GLQ9BT43 218 aa12.99□□□□□ -0.33
LDLR-211ENST00000560173 GLI3P10071 1580 aa12.98□□□□□ -0.33
LDLR-211ENST00000560173 NSD3Q9BZ95 1437 aa12.98□□□□□ -0.33
LDLR-211ENST00000560173 AATKQ6ZMQ8 1374 aa12.98□□□□□ -0.33
LDLR-211ENST00000560173 GJD4Q96KN9 370 aaPredicted RBP12.98□□□□□ -0.33
LDLR-211ENST00000560173 CARD14Q9BXL6 1004 aa12.98□□□□□ -0.33
LDLR-211ENST00000560173 CAMTA1Q9Y6Y1 1673 aa12.98□□□□□ -0.33
LDLR-211ENST00000560173 KIF7Q2M1P5 1343 aa12.97□□□□□ -0.33
LDLR-211ENST00000560173 SOX12O15370 315 aa12.97□□□□□ -0.33
LDLR-211ENST00000560173 ARHGEF25Q86VW2 580 aa12.97□□□□□ -0.33
LDLR-211ENST00000560173 BRWD3Q6RI45 1802 aa12.97□□□□□ -0.33
LDLR-211ENST00000560173 ABCC6O95255 1503 aa12.96□□□□□ -0.33
LDLR-211ENST00000560173 COL18A1P39060 1754 aa12.96□□□□□ -0.34
LDLR-211ENST00000560173 ZBTB7CA1YPR0 619 aa12.95□□□□□ -0.34
LDLR-211ENST00000560173 FYB1O15117 783 aa12.95□□□□□ -0.34
LDLR-211ENST00000560173 COL5A2P05997 1499 aaPredicted RBP12.95□□□□□ -0.34
LDLR-211ENST00000560173 KIF20BQ96Q89 1820 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms