RNA–Protein interactions for RNA: ENST00000559774.6

LRRC28-215, Transcript of leucine rich repeat containing 28, human

TSL 2

Gene LRRC28, Length 624 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LRRC28-215	ENST00000559774	PER1	O15534	1290 aa	Predicted RBP	11.93	□□□□□ -0.5
LRRC28-215	ENST00000559774	CARD14	Q9BXL6	1004 aa		11.93	□□□□□ -0.5
LRRC28-215	ENST00000559774	KNSTRN	Q9Y448	316 aa		11.93	□□□□□ -0.5
LRRC28-215	ENST00000559774	MYOM1	P52179	1685 aa		11.93	□□□□□ -0.5
LRRC28-215	ENST00000559774	TNS3	Q68CZ2	1445 aa		11.93	□□□□□ -0.5
LRRC28-215	ENST00000559774	NPC1L1	Q9UHC9	1359 aa		11.92	□□□□□ -0.5
LRRC28-215	ENST00000559774	NSD2	O96028	1365 aa		11.92	□□□□□ -0.5
LRRC28-215	ENST00000559774	USP31	Q70CQ4	1352 aa		11.92	□□□□□ -0.5
LRRC28-215	ENST00000559774	PAK3	O75914	559 aa	Predicted RBP	11.91	□□□□□ -0.5
LRRC28-215	ENST00000559774	NLRP13	Q86W25	1043 aa		11.91	□□□□□ -0.5
LRRC28-215	ENST00000559774	DDX17	Q92841	729 aa	Known RBP	11.91	□□□□□ -0.5
LRRC28-215	ENST00000559774	JCAD	Q9P266	1359 aa		11.91	□□□□□ -0.5
LRRC28-215	ENST00000559774	COL16A1	Q07092	1604 aa	Predicted RBP	11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	AKAP12	Q02952	1782 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	FYB1	O15117	783 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	HSPA1L	P34931	641 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	XPC	Q01831	940 aa	Predicted RBP	11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	MON2	Q7Z3U7	1717 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	ABTB2	Q8N961	1025 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	NSD3	Q9BZ95	1437 aa		11.9	□□□□□ -0.5
LRRC28-215	ENST00000559774	DDX10	Q13206	875 aa	Known RBP	11.89	□□□□□ -0.51
LRRC28-215	ENST00000559774	TRPM3	Q9HCF6	1732 aa	Predicted RBP	11.89	□□□□□ -0.51
LRRC28-215	ENST00000559774	SPATA31A6	Q5VVP1	1343 aa		11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	NRK	Q7Z2Y5	1582 aa		11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	NLRP6	P59044	892 aa		11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	PNPLA6	Q8IY17	1366 aa		11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	PHLPP1	O60346	1717 aa		11.88	□□□□□ -0.51
LRRC28-215	ENST00000559774	USP19	O94966	1318 aa		11.87	□□□□□ -0.51
LRRC28-215	ENST00000559774	KCNH5	Q8NCM2	988 aa		11.87	□□□□□ -0.51
LRRC28-215	ENST00000559774	COG3	Q96JB2	828 aa		11.87	□□□□□ -0.51
LRRC28-215	ENST00000559774	LMOD2	Q6P5Q4	547 aa		11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	NME9	Q86XW9	330 aa		11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	MED1	Q15648	1581 aa	Predicted RBP	11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	ALS2	Q96Q42	1657 aa		11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	OVOS2	A0A0J9YW53	1432 aa		11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	OVOS2	Q6IE36	1432 aa		11.86	□□□□□ -0.51
LRRC28-215	ENST00000559774	COL22A1	Q8NFW1	1626 aa	Predicted RBP	11.85	□□□□□ -0.51
LRRC28-215	ENST00000559774	GC	P02774	474 aa		11.84	□□□□□ -0.51
LRRC28-215	ENST00000559774	USP54	Q70EL1	1684 aa		11.84	□□□□□ -0.51
LRRC28-215	ENST00000559774	AATK	Q6ZMQ8	1374 aa		11.83	□□□□□ -0.52
LRRC28-215	ENST00000559774	GGNBP2	Q9H3C7	697 aa		11.83	□□□□□ -0.52
LRRC28-215	ENST00000559774	SHPRH	Q149N8	1683 aa		11.83	□□□□□ -0.52
LRRC28-215	ENST00000559774	CPD	O75976	1380 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	KIF24	Q5T7B8	1368 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	SLIT3	O75094	1523 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	PIK3C2A	O00443	1686 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	RALBP1	Q15311	655 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	MORC1	Q86VD1	984 aa		11.82	□□□□□ -0.52
LRRC28-215	ENST00000559774	NUTM2G	Q5VZR2	741 aa		11.81	□□□□□ -0.52
LRRC28-215	ENST00000559774	HAP1	P54257	671 aa	Predicted RBP	11.8	□□□□□ -0.52
LRRC28-215	ENST00000559774	CC2D1B	Q5T0F9	858 aa	Known RBP	11.79	□□□□□ -0.52
LRRC28-215	ENST00000559774	ILDR1	Q86SU0	546 aa	Predicted RBP	11.79	□□□□□ -0.52
LRRC28-215	ENST00000559774	ARHGEF25	Q86VW2	580 aa		11.79	□□□□□ -0.52
LRRC28-215	ENST00000559774	ZRANB1	Q9UGI0	708 aa		11.79	□□□□□ -0.52
LRRC28-215	ENST00000559774	PARD3	Q8TEW0	1356 aa		11.79	□□□□□ -0.52
LRRC28-215	ENST00000559774	CABLES1	Q8TDN4	633 aa		11.78	□□□□□ -0.52
LRRC28-215	ENST00000559774	KIF20B	Q96Q89	1820 aa		11.77	□□□□□ -0.52
LRRC28-215	ENST00000559774	NFAT5	O94916	1531 aa		11.77	□□□□□ -0.52
LRRC28-215	ENST00000559774	ABCC6	O95255	1503 aa		11.77	□□□□□ -0.52
LRRC28-215	ENST00000559774	RTL1	A6NKG5	1358 aa		11.77	□□□□□ -0.53
LRRC28-215	ENST00000559774	PRKRIP1	Q9H875	184 aa	Predicted RBP	11.76	□□□□□ -0.53
LRRC28-215	ENST00000559774	PRDM11	Q9NQV5	511 aa		11.76	□□□□□ -0.53
LRRC28-215	ENST00000559774	POLK	Q9UBT6	870 aa		11.76	□□□□□ -0.53
LRRC28-215	ENST00000559774	ANKRD26	Q9UPS8	1709 aa		11.76	□□□□□ -0.53
LRRC28-215	ENST00000559774	CRYBG1	Q9Y4K1	1723 aa		11.76	□□□□□ -0.53
LRRC28-215	ENST00000559774	NUTM2B	A6NNL0	878 aa	Predicted RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	NUTM2E	B1AL46	878 aa	Predicted RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	ANP32C	O43423	234 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	ADRA2B	P18089	450 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	ZC3H6	P61129	1189 aa	Known RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	NUTM2A	Q8IVF1	878 aa	Predicted RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	FNBP4	Q8N3X1	1017 aa	Predicted RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	IP6K1	Q92551	441 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	MAP3K19	Q56UN5	1328 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	INSR	P06213	1382 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	KIAA0232	Q92628	1395 aa		11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	SMG6	Q86US8	1419 aa	Known RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	PHRF1	Q9P1Y6	1649 aa	Known RBP	11.75	□□□□□ -0.53
LRRC28-215	ENST00000559774	MARF1	Q9Y4F3	1742 aa	Known RBP	11.74	□□□□□ -0.53
LRRC28-215	ENST00000559774	FAM83G	A6ND36	823 aa		11.74	□□□□□ -0.53
LRRC28-215	ENST00000559774	AMPH	P49418	695 aa		11.74	□□□□□ -0.53
LRRC28-215	ENST00000559774	FLT4	P35916	1363 aa		11.74	□□□□□ -0.53
LRRC28-215	ENST00000559774	BLM	P54132	1417 aa	Predicted RBP	11.74	□□□□□ -0.53
LRRC28-215	ENST00000559774	LRP6	O75581	1613 aa		11.73	□□□□□ -0.53
LRRC28-215	ENST00000559774	ADAMTS2	O95450	1211 aa		11.73	□□□□□ -0.53
LRRC28-215	ENST00000559774	PPP2R1A	P30153	589 aa		11.73	□□□□□ -0.53
LRRC28-215	ENST00000559774	DIEXF	Q68CQ4	756 aa	Known RBP	11.73	□□□□□ -0.53
LRRC28-215	ENST00000559774	MYBBP1A	Q9BQG0	1328 aa	Known RBP	11.73	□□□□□ -0.53
LRRC28-215	ENST00000559774	ABCA3	Q99758	1704 aa		11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	SOX12	O15370	315 aa		11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	HOXC9	P31274	260 aa		11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	TNNT2	P45379	298 aa	Predicted RBP	11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	RRS1	Q15050	365 aa	Known RBP	11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	MEX3C	Q5U5Q3	659 aa	Known RBP	11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	NGLY1	Q96IV0	654 aa		11.72	□□□□□ -0.53
LRRC28-215	ENST00000559774	SLIT2	O94813	1529 aa		11.71	□□□□□ -0.53
LRRC28-215	ENST00000559774	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.71	□□□□□ -0.53
LRRC28-215	ENST00000559774	MTHFS	P49914	203 aa		11.71	□□□□□ -0.53

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