RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 POTEAQ6S8J7 498 aa13.72□□□□□ -0.21
SPG11-214ENST00000558989 NGDNQ8NEJ9 315 aaKnown RBP13.72□□□□□ -0.21
SPG11-214ENST00000558989 ANKARQ7Z5J8 1434 aa13.72□□□□□ -0.21
SPG11-214ENST00000558989 EIF3AQ14152 1382 aaKnown RBP13.71□□□□□ -0.22
SPG11-214ENST00000558989 PAK3O75914 559 aaPredicted RBP13.71□□□□□ -0.22
SPG11-214ENST00000558989 ATP7BP35670 1465 aa13.7□□□□□ -0.22
SPG11-214ENST00000558989 CABLES1Q8TDN4 633 aa13.7□□□□□ -0.22
SPG11-214ENST00000558989 FBXO3Q9UK99 471 aa13.7□□□□□ -0.22
SPG11-214ENST00000558989 BBXQ8WY36 941 aaPredicted RBP13.69□□□□□ -0.22
SPG11-214ENST00000558989 MARF1Q9Y4F3 1742 aaKnown RBP13.69□□□□□ -0.22
SPG11-214ENST00000558989 TOPAZ1Q8N9V7 1692 aa13.69□□□□□ -0.22
SPG11-214ENST00000558989 COL22A1Q8NFW1 1626 aaPredicted RBP13.69□□□□□ -0.22
SPG11-214ENST00000558989 AFF2P51816 1311 aa13.69□□□□□ -0.22
SPG11-214ENST00000558989 SPATA31A3Q5VYP0 1347 aa13.69□□□□□ -0.22
SPG11-214ENST00000558989 NPM2Q86SE8 214 aaKnown RBP13.69□□□□□ -0.22
SPG11-214ENST00000558989 NGLY1Q96IV0 654 aa13.69□□□□□ -0.22
SPG11-214ENST00000558989 GPRASP1Q5JY77 1395 aa13.68□□□□□ -0.22
SPG11-214ENST00000558989 TRPM3Q9HCF6 1732 aaPredicted RBP13.68□□□□□ -0.22
SPG11-214ENST00000558989 RALGAPBQ86X10 1494 aa13.68□□□□□ -0.22
SPG11-214ENST00000558989 NBR1Q14596 966 aa13.67□□□□□ -0.22
SPG11-214ENST00000558989 TNS3Q68CZ2 1445 aa13.67□□□□□ -0.22
SPG11-214ENST00000558989 NUTM2GQ5VZR2 741 aa13.67□□□□□ -0.22
SPG11-214ENST00000558989 ACEP12821 1306 aa13.65□□□□□ -0.22
SPG11-214ENST00000558989 EVC2Q86UK5 1308 aa13.65□□□□□ -0.22
SPG11-214ENST00000558989 PPIP5K1Q6PFW1 1433 aa13.65□□□□□ -0.22
SPG11-214ENST00000558989 CCDC61Q9Y6R9 512 aa13.65□□□□□ -0.22
SPG11-214ENST00000558989 ABCA3Q99758 1704 aa13.65□□□□□ -0.22
SPG11-214ENST00000558989 ZNF772Q68DY9 489 aaPredicted RBP13.64□□□□□ -0.23
SPG11-214ENST00000558989 ALS2Q96Q42 1657 aa13.64□□□□□ -0.23
SPG11-214ENST00000558989 PAXIP1Q6ZW49 1069 aaPredicted RBP13.64□□□□□ -0.23
SPG11-214ENST00000558989 SOCS7O14512 581 aa13.63□□□□□ -0.23
SPG11-214ENST00000558989 CABP1Q9NZU7 370 aa13.63□□□□□ -0.23
SPG11-214ENST00000558989 SBNO1A3KN83 1393 aa13.63□□□□□ -0.23
SPG11-214ENST00000558989 USP21Q9UK80 565 aa13.62□□□□□ -0.23
SPG11-214ENST00000558989 QTRT2Q9H974 415 aaKnown RBP13.62□□□□□ -0.23
SPG11-214ENST00000558989 ARHGEF10O15013 1369 aa13.61□□□□□ -0.23
SPG11-214ENST00000558989 ST20-MTHFSA0A0A6YYL1 179 aa13.6□□□□□ -0.23
SPG11-214ENST00000558989 PLEKHG3A1L390 1219 aa13.6□□□□□ -0.23
SPG11-214ENST00000558989 RXRBP28702 533 aa13.6□□□□□ -0.23
SPG11-214ENST00000558989 TMC1Q8TDI8 760 aa13.6□□□□□ -0.23
SPG11-214ENST00000558989 CLSPNQ9HAW4 1339 aa13.59□□□□□ -0.23
SPG11-214ENST00000558989 PLCH1Q4KWH8 1693 aa13.59□□□□□ -0.23
SPG11-214ENST00000558989 POLR3AO14802 1390 aaPredicted RBP13.58□□□□□ -0.23
SPG11-214ENST00000558989 ABTB2Q8N961 1025 aa13.58□□□□□ -0.24
SPG11-214ENST00000558989 CRYBG1Q9Y4K1 1723 aa13.58□□□□□ -0.24
SPG11-214ENST00000558989 AKAP12Q02952 1782 aa13.58□□□□□ -0.24
SPG11-214ENST00000558989 ZBTB7CA1YPR0 619 aa13.57□□□□□ -0.24
SPG11-214ENST00000558989 PHRF1Q9P1Y6 1649 aaKnown RBP13.57□□□□□ -0.24
SPG11-214ENST00000558989 USP47Q96K76 1375 aa13.57□□□□□ -0.24
SPG11-214ENST00000558989 ZC3H6P61129 1189 aaKnown RBP13.56□□□□□ -0.24
SPG11-214ENST00000558989 CFAP44Q96MT7 982 aa13.56□□□□□ -0.24
SPG11-214ENST00000558989 FAM83GA6ND36 823 aa13.55□□□□□ -0.24
SPG11-214ENST00000558989 FNBP4Q8N3X1 1017 aaPredicted RBP13.55□□□□□ -0.24
SPG11-214ENST00000558989 TRPC5Q9UL62 973 aaPredicted RBP13.55□□□□□ -0.24
SPG11-214ENST00000558989 CCDC9Q9Y3X0 531 aaKnown RBP13.55□□□□□ -0.24
SPG11-214ENST00000558989 CHRNA2Q15822 529 aa13.55□□□□□ -0.24
SPG11-214ENST00000558989 BCL9LQ86UU0 1499 aa13.55□□□□□ -0.24
SPG11-214ENST00000558989 SOX12O15370 315 aa13.54□□□□□ -0.24
SPG11-214ENST00000558989 USP6P35125 1406 aa13.54□□□□□ -0.24
SPG11-214ENST00000558989 RBM6P78332 1123 aaKnown RBP13.54□□□□□ -0.24
SPG11-214ENST00000558989 ATAD2Q6PL18 1390 aa13.54□□□□□ -0.24
SPG11-214ENST00000558989 SLC12A5Q9H2X9 1139 aa13.54□□□□□ -0.24
SPG11-214ENST00000558989 SBNO2Q9Y2G9 1366 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.53□□□□□ -0.24
SPG11-214ENST00000558989 TESK2Q96S53 571 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 KTN1Q86UP2 1357 aaKnown RBP13.53□□□□□ -0.24
SPG11-214ENST00000558989 NLRP6P59044 892 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 UNC5CLQ8IV45 518 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 PRDM11Q9NQV5 511 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 BTG4Q9NY30 223 aa13.53□□□□□ -0.24
SPG11-214ENST00000558989 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.52□□□□□ -0.24
SPG11-214ENST00000558989 PIK3C2AO00443 1686 aa13.52□□□□□ -0.24
SPG11-214ENST00000558989 SLIT2O94813 1529 aa13.52□□□□□ -0.24
SPG11-214ENST00000558989 COL14A1Q05707 1796 aaKnown RBP13.52□□□□□ -0.25
SPG11-214ENST00000558989 MON2Q7Z3U7 1717 aa13.52□□□□□ -0.25
SPG11-214ENST00000558989 NWD2Q9ULI1 1742 aa13.52□□□□□ -0.25
SPG11-214ENST00000558989 POLR3GLQ9BT43 218 aa13.52□□□□□ -0.25
SPG11-214ENST00000558989 RGS12O14924 1447 aa13.51□□□□□ -0.25
SPG11-214ENST00000558989 ATRNO75882 1429 aa13.51□□□□□ -0.25
SPG11-214ENST00000558989 KIAA0232Q92628 1395 aa13.51□□□□□ -0.25
SPG11-214ENST00000558989 NRKQ7Z2Y5 1582 aa13.51□□□□□ -0.25
SPG11-214ENST00000558989 NLRP13Q86W25 1043 aa13.5□□□□□ -0.25
SPG11-214ENST00000558989 NRAPQ86VF7 1730 aa13.5□□□□□ -0.25
SPG11-214ENST00000558989 TTC21BQ7Z4L5 1316 aa13.5□□□□□ -0.25
SPG11-214ENST00000558989 STRN4Q9NRL3 753 aa13.5□□□□□ -0.25
SPG11-214ENST00000558989 ZRANB1Q9UGI0 708 aa13.5□□□□□ -0.25
SPG11-214ENST00000558989 BRWD3Q6RI45 1802 aa13.49□□□□□ -0.25
SPG11-214ENST00000558989 A0A0G2JS52 829 aa13.49□□□□□ -0.25
SPG11-214ENST00000558989 TMF1P82094 1093 aa13.49□□□□□ -0.25
SPG11-214ENST00000558989 HDGFL2Q7Z4V5 671 aaPredicted RBP13.49□□□□□ -0.25
SPG11-214ENST00000558989 GJD4Q96KN9 370 aaPredicted RBP13.49□□□□□ -0.25
SPG11-214ENST00000558989 ZNF692Q9BU19 519 aaPredicted RBP13.49□□□□□ -0.25
SPG11-214ENST00000558989 TSHZ2Q9NRE2 1034 aa13.49□□□□□ -0.25
SPG11-214ENST00000558989 GLI3P10071 1580 aa13.49□□□□□ -0.25
SPG11-214ENST00000558989 RGPD5Q99666 1765 aa13.48□□□□□ -0.25
SPG11-214ENST00000558989 CD163L1Q9NR16 1453 aa13.48□□□□□ -0.25
SPG11-214ENST00000558989 CPSF1Q10570 1443 aaKnown RBP13.48□□□□□ -0.25
SPG11-214ENST00000558989 GCP02774 474 aa13.48□□□□□ -0.25
SPG11-214ENST00000558989 SSH2Q76I76 1423 aa13.47□□□□□ -0.25
SPG11-214ENST00000558989 NME9Q86XW9 330 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms