RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	SMAP1	Q8IYB5	467 aa	Predicted RBP	11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	CCDC47	Q96A33	483 aa	Known RBP	11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	RABEP1	Q15276	862 aa		11.53	□□□□□ -0.56
TRPM1-208	ENST00000558768	FSD2	A1L4K1	749 aa		11.52	□□□□□ -0.56
TRPM1-208	ENST00000558768	PPP4R3B	Q5MIZ7	849 aa		11.52	□□□□□ -0.56
TRPM1-208	ENST00000558768	CCDC91	Q7Z6B0	441 aa		11.52	□□□□□ -0.56
TRPM1-208	ENST00000558768	DDX19B	Q9UMR2	479 aa		11.52	□□□□□ -0.56
TRPM1-208	ENST00000558768	CFAP43	Q8NDM7	1665 aa		11.52	□□□□□ -0.56
TRPM1-208	ENST00000558768	GOLGA6L10	A0A0M3HER8	536 aa		11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	DZIP1L	Q8IYY4	767 aa	Known RBP	11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	CPSF2	Q9P2I0	782 aa	Known RBP	11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	FILIP1	Q7Z7B0	1213 aa		11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	BCL2L13	Q9BXK5	485 aa		11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	SMC3	Q9UQE7	1217 aa		11.52	□□□□□ -0.57
TRPM1-208	ENST00000558768	ERLIN2	O94905	339 aa		11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	NAP1L1	P55209	391 aa	Known RBP	11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	TXLNB	Q8N3L3	684 aa		11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	CCDC144A	A2RUR9	1427 aa		11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	WWC1	Q8IX03	1113 aa		11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	PRIMPOL	Q96LW4	560 aa		11.51	□□□□□ -0.57
TRPM1-208	ENST00000558768	IGHD	P01880	384 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	SPATA31E1	Q6ZUB1	1445 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	INSR	P06213	1382 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	HS1BP3	Q53T59	392 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	LUZP1	Q86V48	1076 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	NOL10	Q9BSC4	688 aa	Known RBP	11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	PARD3	Q8TEW0	1356 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	VPS37C	A5D8V6	355 aa	Predicted RBP	11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	ZKSCAN1	P17029	563 aa	Predicted RBP	11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	TNPO1	Q92973	898 aa	Known RBP	11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	SDF4	Q9BRK5	362 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	FAM193A	P78312	1265 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	BMS1	Q14692	1282 aa	Known RBP	11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	ANKRD45	Q5TZF3	282 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	PDILT	Q8N807	584 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	CRACR2A	Q9BSW2	395 aa		11.5	□□□□□ -0.57
TRPM1-208	ENST00000558768	KRT222	Q8N1A0	295 aa		11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	SMARCE1	Q969G3	411 aa		11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	GBP2	P32456	591 aa	Predicted RBP	11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	PRPF40A	O75400	957 aa	Known RBP	11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	IVL	P07476	585 aa		11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	CCDC192	P0DO97	292 aa		11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	SPC24	Q8NBT2	197 aa		11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	NKTR	P30414	1462 aa	Known RBP	11.49	□□□□□ -0.57
TRPM1-208	ENST00000558768	ZFP91	Q96JP5	570 aa	Predicted RBP	11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	DAPK1	P53355	1430 aa		11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	IBSP	P21815	317 aa	Predicted RBP	11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	OLFM4	Q6UX06	510 aa		11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	SPATA24	Q86W54	205 aa		11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	ZNF644	Q9H582	1327 aa	Predicted RBP	11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768		K7ELQ4	463 aa	Predicted RBP	11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	KIF18A	Q8NI77	898 aa		11.48	□□□□□ -0.57
TRPM1-208	ENST00000558768	RUFY2	Q8WXA3	655 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	SEC24B	O95487	1268 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	EZR	P15311	586 aa	Known RBP	11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	ENOX2	Q16206	610 aa	Known RBP	11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	ANKRD50	Q9ULJ7	1429 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	ODF2	Q5BJF6	829 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	RASSF4	Q9H2L5	321 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	MCM2	P49736	904 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	XPC	Q01831	940 aa	Predicted RBP	11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	IQCE	Q6IPM2	695 aa		11.47	□□□□□ -0.57
TRPM1-208	ENST00000558768	TDRD9	Q8NDG6	1382 aa	Known RBP	11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	POLR3G	O15318	223 aa	Predicted RBP	11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	TRIM34	Q9BYJ4	488 aa		11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	RRP7A	Q9Y3A4	280 aa	Known RBP	11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	SMC2	O95347	1197 aa		11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	FBLN2	P98095	1184 aa		11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	MAP9	Q49MG5	647 aa		11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	RUNDC1	Q96C34	613 aa		11.46	□□□□□ -0.57
TRPM1-208	ENST00000558768	KLHL40	Q2TBA0	621 aa		11.46	□□□□□ -0.58
TRPM1-208	ENST00000558768	BCCIP	Q9P287	314 aa	Known RBP eCLIP	11.46	□□□□□ -0.58
TRPM1-208	ENST00000558768	PTPN14	Q15678	1187 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	INTS3	Q68E01	1043 aa	Known RBP	11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	HECW1	Q76N89	1606 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	KIN	O60870	393 aa	Known RBP	11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	FILIP1L	Q4L180	1135 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	CWC22	Q9HCG8	908 aa	Known RBP	11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	TOMM22	Q9NS69	142 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768		A0A1B0GUA9	196 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	RBM33	Q96EV2	1170 aa	Known RBP	11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	LNPK	Q9C0E8	428 aa		11.45	□□□□□ -0.58
TRPM1-208	ENST00000558768	TTC31	Q49AM3	519 aa	Predicted RBP	11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	BANK1	Q8NDB2	785 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	RILPL2	Q969X0	211 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	RTF1	Q92541	710 aa	Known RBP	11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	CCDC94	Q9BW85	323 aa	Predicted RBP	11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	SPDYE4	A6NLX3	237 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	TRIM29	Q14134	588 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	SLC26A8	Q96RN1	970 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	RALGAPB	Q86X10	1494 aa		11.44	□□□□□ -0.58
TRPM1-208	ENST00000558768	MCM3	P25205	808 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	MVP	Q14764	893 aa	Known RBP	11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	WDR66	Q8TBY9	1149 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	ANKRD18A	Q8IVF6	992 aa		11.43	□□□□□ -0.58
TRPM1-208	ENST00000558768	SMARCC1	Q92922	1105 aa	Predicted RBP	11.43	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms