RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 SPINK5Q9NQ38 1064 aaPredicted RBP12.2□□□□□ -0.46
USP3-208ENST00000558285 AFF2P51816 1311 aa12.2□□□□□ -0.46
USP3-208ENST00000558285 RALGAPBQ86X10 1494 aa12.2□□□□□ -0.46
USP3-208ENST00000558285 RXRBP28702 533 aa12.2□□□□□ -0.46
USP3-208ENST00000558285 ATAD2Q6PL18 1390 aa12.19□□□□□ -0.46
USP3-208ENST00000558285 COL22A1Q8NFW1 1626 aaPredicted RBP12.19□□□□□ -0.46
USP3-208ENST00000558285 ILDR2Q71H61 639 aa12.19□□□□□ -0.46
USP3-208ENST00000558285 LRP6O75581 1613 aa12.18□□□□□ -0.46
USP3-208ENST00000558285 PLEKHG3A1L390 1219 aa12.18□□□□□ -0.46
USP3-208ENST00000558285 TRPC5Q9UL62 973 aaPredicted RBP12.18□□□□□ -0.46
USP3-208ENST00000558285 SBNO2Q9Y2G9 1366 aa12.18□□□□□ -0.46
USP3-208ENST00000558285 ATP7BP35670 1465 aa12.18□□□□□ -0.46
USP3-208ENST00000558285 ZNF692Q9BU19 519 aaPredicted RBP12.17□□□□□ -0.46
USP3-208ENST00000558285 USP21Q9UK80 565 aa12.17□□□□□ -0.46
USP3-208ENST00000558285 RBM6P78332 1123 aaKnown RBP12.17□□□□□ -0.46
USP3-208ENST00000558285 CDCA8Q53HL2 280 aa12.17□□□□□ -0.46
USP3-208ENST00000558285 QRICH2Q9H0J4 1663 aa12.16□□□□□ -0.46
USP3-208ENST00000558285 PRR36Q9H6K5 1346 aa12.16□□□□□ -0.46
USP3-208ENST00000558285 PPIP5K1Q6PFW1 1433 aa12.16□□□□□ -0.46
USP3-208ENST00000558285 POLR3AO14802 1390 aaPredicted RBP12.16□□□□□ -0.46
USP3-208ENST00000558285 ACEP12821 1306 aa12.16□□□□□ -0.46
USP3-208ENST00000558285 NBPF8Q3BBV2 869 aa12.15□□□□□ -0.46
USP3-208ENST00000558285 FNBP4Q8N3X1 1017 aaPredicted RBP12.15□□□□□ -0.46
USP3-208ENST00000558285 PUS7Q96PZ0 661 aaKnown RBP12.15□□□□□ -0.46
USP3-208ENST00000558285 QTRT2Q9H974 415 aaKnown RBP12.15□□□□□ -0.46
USP3-208ENST00000558285 CABP2Q9NPB3 220 aa12.15□□□□□ -0.46
USP3-208ENST00000558285 RGS17Q9UGC6 210 aaPredicted RBP12.15□□□□□ -0.46
USP3-208ENST00000558285 POTEAQ6S8J7 498 aa12.14□□□□□ -0.47
USP3-208ENST00000558285 USP32Q8NFA0 1604 aa12.14□□□□□ -0.47
USP3-208ENST00000558285 CDK12Q9NYV4 1490 aaPredicted RBP12.14□□□□□ -0.47
USP3-208ENST00000558285 NLRP13Q86W25 1043 aa12.14□□□□□ -0.47
USP3-208ENST00000558285 NINLQ9Y2I6 1382 aa12.13□□□□□ -0.47
USP3-208ENST00000558285 HDGFL2Q7Z4V5 671 aaPredicted RBP12.13□□□□□ -0.47
USP3-208ENST00000558285 ABTB2Q8N961 1025 aa12.13□□□□□ -0.47
USP3-208ENST00000558285 TERF2IPQ9NYB0 399 aa12.13□□□□□ -0.47
USP3-208ENST00000558285 RGPD8O14715 1765 aaPredicted RBP12.13□□□□□ -0.47
USP3-208ENST00000558285 CABP1Q9NZU7 370 aa12.12□□□□□ -0.47
USP3-208ENST00000558285 TMF1P82094 1093 aa12.11□□□□□ -0.47
USP3-208ENST00000558285 CHRDL2Q6WN34 429 aa12.11□□□□□ -0.47
USP3-208ENST00000558285 UNC5CLQ8IV45 518 aa12.11□□□□□ -0.47
USP3-208ENST00000558285 PRDM11Q9NQV5 511 aa12.11□□□□□ -0.47
USP3-208ENST00000558285 PLEKHG5O94827 1062 aa12.1□□□□□ -0.47
USP3-208ENST00000558285 CCDC9Q9Y3X0 531 aaKnown RBP12.1□□□□□ -0.47
USP3-208ENST00000558285 TTC21AQ8NDW8 1320 aa12.1□□□□□ -0.47
USP3-208ENST00000558285 TOPAZ1Q8N9V7 1692 aa12.1□□□□□ -0.47
USP3-208ENST00000558285 TMC1Q8TDI8 760 aa12.09□□□□□ -0.47
USP3-208ENST00000558285 KCNH5Q8NCM2 988 aa12.08□□□□□ -0.47
USP3-208ENST00000558285 CABLES1Q8TDN4 633 aa12.08□□□□□ -0.47
USP3-208ENST00000558285 USP47Q96K76 1375 aa12.08□□□□□ -0.48
USP3-208ENST00000558285 USP6P35125 1406 aa12.08□□□□□ -0.48
USP3-208ENST00000558285 TRPM3Q9HCF6 1732 aaPredicted RBP12.07□□□□□ -0.48
USP3-208ENST00000558285 ST20-MTHFSA0A0A6YYL1 179 aa12.07□□□□□ -0.48
USP3-208ENST00000558285 NLRP6P59044 892 aa12.07□□□□□ -0.48
USP3-208ENST00000558285 GJD4Q96KN9 370 aaPredicted RBP12.07□□□□□ -0.48
USP3-208ENST00000558285 U3KPZ7 1027 aaPredicted RBP12.07□□□□□ -0.48
USP3-208ENST00000558285 KTN1Q86UP2 1357 aaKnown RBP12.07□□□□□ -0.48
USP3-208ENST00000558285 ATRNO75882 1429 aa12.07□□□□□ -0.48
USP3-208ENST00000558285 MARF1Q9Y4F3 1742 aaKnown RBP12.07□□□□□ -0.48
USP3-208ENST00000558285 SLIT2O94813 1529 aa12.06□□□□□ -0.48
USP3-208ENST00000558285 EVA1CP58658 441 aa12.06□□□□□ -0.48
USP3-208ENST00000558285 VPS72Q15906 364 aa12.06□□□□□ -0.48
USP3-208ENST00000558285 ALS2Q96Q42 1657 aa12.06□□□□□ -0.48
USP3-208ENST00000558285 BTG4Q9NY30 223 aa12.05□□□□□ -0.48
USP3-208ENST00000558285 BCL9LQ86UU0 1499 aa12.04□□□□□ -0.48
USP3-208ENST00000558285 COL14A1Q05707 1796 aaKnown RBP12.04□□□□□ -0.48
USP3-208ENST00000558285 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.04□□□□□ -0.48
USP3-208ENST00000558285 NWD2Q9ULI1 1742 aa12.04□□□□□ -0.48
USP3-208ENST00000558285 A0A0G2JS52 829 aa12.04□□□□□ -0.48
USP3-208ENST00000558285 EIF4G2P78344 907 aaKnown RBP eCLIP12.04□□□□□ -0.48
USP3-208ENST00000558285 FOXD4L1Q9NU39 408 aa12.04□□□□□ -0.48
USP3-208ENST00000558285 CPDO75976 1380 aa12.04□□□□□ -0.48
USP3-208ENST00000558285 USP19O94966 1318 aa12.03□□□□□ -0.48
USP3-208ENST00000558285 TTC21BQ7Z4L5 1316 aa12.03□□□□□ -0.48
USP3-208ENST00000558285 FAM83GA6ND36 823 aa12.03□□□□□ -0.48
USP3-208ENST00000558285 NUTM2GQ5VZR2 741 aa12.03□□□□□ -0.48
USP3-208ENST00000558285 GCP02774 474 aa12.03□□□□□ -0.48
USP3-208ENST00000558285 KIAA0232Q92628 1395 aa12.02□□□□□ -0.48
USP3-208ENST00000558285 ZC3H6P61129 1189 aaKnown RBP12.02□□□□□ -0.49
USP3-208ENST00000558285 CCDC125Q86Z20 511 aa12.02□□□□□ -0.49
USP3-208ENST00000558285 CPSF1Q10570 1443 aaKnown RBP12.02□□□□□ -0.49
USP3-208ENST00000558285 EDC4Q6P2E9 1401 aaKnown RBP12.02□□□□□ -0.49
USP3-208ENST00000558285 TESK2Q96S53 571 aa12.01□□□□□ -0.49
USP3-208ENST00000558285 ABCA3Q99758 1704 aa12.01□□□□□ -0.49
USP3-208ENST00000558285 RBM42Q9BTD8 480 aaKnown RBP12□□□□□ -0.49
USP3-208ENST00000558285 RGS12O14924 1447 aa12□□□□□ -0.49
USP3-208ENST00000558285 ZBTB7CA1YPR0 619 aa12□□□□□ -0.49
USP3-208ENST00000558285 C11orf95C9JLR9 678 aaPredicted RBP12□□□□□ -0.49
USP3-208ENST00000558285 SF3B2Q13435 895 aaKnown RBP12□□□□□ -0.49
USP3-208ENST00000558285 SSH2Q76I76 1423 aa11.99□□□□□ -0.49
USP3-208ENST00000558285 PLCH1Q4KWH8 1693 aa11.99□□□□□ -0.49
USP3-208ENST00000558285 ZEB1P37275 1124 aaPredicted RBP11.99□□□□□ -0.49
USP3-208ENST00000558285 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP3-208ENST00000558285 SLC12A5Q9H2X9 1139 aa11.99□□□□□ -0.49
USP3-208ENST00000558285 STRN4Q9NRL3 753 aa11.99□□□□□ -0.49
USP3-208ENST00000558285 COG3Q96JB2 828 aa11.98□□□□□ -0.49
USP3-208ENST00000558285 THRAP3Q9Y2W1 955 aaKnown RBP11.98□□□□□ -0.49
USP3-208ENST00000558285 AATKQ6ZMQ8 1374 aa11.98□□□□□ -0.49
USP3-208ENST00000558285 ANKRD36BQ8N2N9 1353 aa11.98□□□□□ -0.49
USP3-208ENST00000558285 PHRF1Q9P1Y6 1649 aaKnown RBP11.98□□□□□ -0.49
USP3-208ENST00000558285 SEPT12Q8IYM1 358 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms