RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 CFAP45Q9UL16 551 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 AEBP1Q8IUX7 1158 aa10.43□□□□□ -0.74
SYNE3-205ENST00000557275 API5Q9BZZ5 524 aaKnown RBP10.43□□□□□ -0.74
SYNE3-205ENST00000557275 SENP3Q9H4L4 574 aaPredicted RBP10.43□□□□□ -0.74
SYNE3-205ENST00000557275 KIF3CO14782 793 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 FAM114A2Q9NRY5 505 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 FERP16591 822 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 CCDC6Q16204 474 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 TUBB4BP68371 445 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 TTC5Q8N0Z6 440 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 CCDC102AQ96A19 550 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 CCDC97Q96F63 343 aaPredicted RBP10.42□□□□□ -0.74
SYNE3-205ENST00000557275 CCDC83Q8IWF9 413 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 TSHZ2Q9NRE2 1034 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 ANAPC15P60006 121 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 FMN1Q68DA7 1419 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 DNAAF4Q8WXU2 420 aa10.42□□□□□ -0.74
SYNE3-205ENST00000557275 SH3BGRP55822 239 aaPredicted RBP10.42□□□□□ -0.74
SYNE3-205ENST00000557275 EPB41L2O43491 1005 aaKnown RBP10.41□□□□□ -0.74
SYNE3-205ENST00000557275 PAK3O75914 559 aaPredicted RBP10.41□□□□□ -0.74
SYNE3-205ENST00000557275 ZSCAN12O43309 604 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 SERPINC1P01008 464 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 UBXN4Q92575 508 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 CDKL5O76039 1030 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 G3BP1Q13283 466 aaKnown RBP eCLIP10.41□□□□□ -0.74
SYNE3-205ENST00000557275 GTPBP4Q9BZE4 634 aaKnown RBP10.41□□□□□ -0.74
SYNE3-205ENST00000557275 TAF4BQ92750 862 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 TMEM132AQ24JP5 1023 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 PDCL3Q9H2J4 239 aa10.41□□□□□ -0.74
SYNE3-205ENST00000557275 AMPHP49418 695 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 BMS1Q14692 1282 aaKnown RBP10.4□□□□□ -0.74
SYNE3-205ENST00000557275 VGFO15240 615 aaPredicted RBP10.4□□□□□ -0.74
SYNE3-205ENST00000557275 IL27Q8NEV9 243 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 CNTROBQ8N137 903 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 CARMIL2Q6F5E8 1435 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 IVLP07476 585 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 KRT18P05783 430 aaKnown RBP10.4□□□□□ -0.74
SYNE3-205ENST00000557275 SMTNL1A8MU46 457 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 ANKS4BQ8N8V4 417 aa10.4□□□□□ -0.74
SYNE3-205ENST00000557275 NAA15Q9BXJ9 866 aaKnown RBP10.4□□□□□ -0.74
SYNE3-205ENST00000557275 LRRFIP2Q9Y608 721 aaKnown RBP10.4□□□□□ -0.74
SYNE3-205ENST00000557275 ARHGAP29Q52LW3 1261 aa10.4□□□□□ -0.75
SYNE3-205ENST00000557275 BMP2KQ9NSY1 1161 aaPredicted RBP10.4□□□□□ -0.75
SYNE3-205ENST00000557275 CGNQ9P2M7 1197 aaKnown RBP10.39□□□□□ -0.75
SYNE3-205ENST00000557275 GOLGA6L9A6NEM1 432 aa10.39□□□□□ -0.75
SYNE3-205ENST00000557275 DNAJC2Q99543 621 aaKnown RBP10.39□□□□□ -0.75
SYNE3-205ENST00000557275 TRIM22Q8IYM9 498 aa10.39□□□□□ -0.75
SYNE3-205ENST00000557275 SCAPERQ9BY12 1400 aa10.39□□□□□ -0.75
SYNE3-205ENST00000557275 NOL3O60936 208 aaKnown RBP10.39□□□□□ -0.75
SYNE3-205ENST00000557275 CEP57L1Q8IYX8 460 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 FILIP1Q7Z7B0 1213 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC18Q5T9S5 1454 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 RRP1P56182 461 aaKnown RBP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC9Q9Y3X0 531 aaKnown RBP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 FGFR1OPO95684 399 aaKnown RBP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 C22orf23Q9BZE7 217 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 CPSF2Q9P2I0 782 aaKnown RBP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 WRNQ14191 1432 aaPredicted RBP eCLIP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 RAD21O60216 631 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 EID1Q9Y6B2 187 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 CDC45O75419 566 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 KIF18AQ8NI77 898 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 RRBP1Q9P2E9 1410 aaKnown RBP10.38□□□□□ -0.75
SYNE3-205ENST00000557275 TBC1D2BQ9UPU7 963 aa10.38□□□□□ -0.75
SYNE3-205ENST00000557275 TEFQ10587 303 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 STMN4Q9H169 189 aaPredicted RBP10.37□□□□□ -0.75
SYNE3-205ENST00000557275 SOX12O15370 315 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 NEMFO60524 1076 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 DNAJC21Q5F1R6 531 aaKnown RBP10.37□□□□□ -0.75
SYNE3-205ENST00000557275 UQCRHLA0A096LP55 91 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 UQCRHP07919 91 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 EHBP1Q8NDI1 1231 aa10.37□□□□□ -0.75
SYNE3-205ENST00000557275 WDR33Q9C0J8 1336 aaKnown RBP10.37□□□□□ -0.75
SYNE3-205ENST00000557275 NSRP1Q9H0G5 558 aaKnown RBP10.37□□□□□ -0.75
SYNE3-205ENST00000557275 LRRC45Q96CN5 670 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 CAVIN2O95810 425 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 GON4LQ3T8J9 2241 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 FOXD4L6Q3SYB3 417 aaPredicted RBP10.36□□□□□ -0.75
SYNE3-205ENST00000557275 FOXD4L3Q6VB84 417 aaPredicted RBP10.36□□□□□ -0.75
SYNE3-205ENST00000557275 PLVAPQ9BX97 442 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 KIF5CO60282 957 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 MKRN1Q9UHC7 482 aaKnown RBP10.36□□□□□ -0.75
SYNE3-205ENST00000557275 PABPN1LA6NDY0 278 aaKnown RBP10.36□□□□□ -0.75
SYNE3-205ENST00000557275 HSPA4P34932 840 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 MIA2Q96PC5 1412 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 SPA17Q15506 151 aa10.36□□□□□ -0.75
SYNE3-205ENST00000557275 IFFO1Q0D2I5 559 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 NAP1L3Q99457 506 aaPredicted RBP10.35□□□□□ -0.75
SYNE3-205ENST00000557275 TNMDQ9H2S6 317 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC7Q96M83 1385 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 KRT85P78386 507 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 TIGD1Q96MW7 591 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC57Q2TAC2 916 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 TRAK2O60296 914 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 PAIP2Q9BPZ3 127 aaKnown RBP10.35□□□□□ -0.75
SYNE3-205ENST00000557275 HSPA5P11021 654 aaKnown RBP10.35□□□□□ -0.75
SYNE3-205ENST00000557275 TSNARE1Q96NA8 513 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 CEP131Q9UPN4 1083 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 ZFYP08048 801 aaPredicted RBP10.35□□□□□ -0.75
SYNE3-205ENST00000557275 FAM184BQ9ULE4 1060 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms