RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 RILPL2Q969X0 211 aa15.12■□□□□ 0.01
CCDC88C-211ENST00000556726 PREX2Q70Z35 1606 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 CROCC2H7BZ55 1655 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 A0A1W2PP64 1363 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 ERVK-7P63135 1459 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 TRAK2O60296 914 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 RBM42Q9BTD8 480 aaKnown RBP15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 TAOK2Q9UL54 1235 aa15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 PRDM15P57071 1507 aaPredicted RBP15.11■□□□□ 0.01
CCDC88C-211ENST00000556726 OS9Q13438 667 aaPredicted RBP15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 CHMP4BQ9H444 224 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 PTPRTO14522 1441 aa15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 EIF2S2P20042 333 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 TRMT2AQ8IZ69 625 aaKnown RBP15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 PLCB2Q00722 1185 aa15.1■□□□□ 0.01
CCDC88C-211ENST00000556726 RPGRIP1LQ68CZ1 1315 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 ADCY10Q96PN6 1610 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 TBC1D32Q96NH3 1257 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 TRIM35Q9UPQ4 493 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 AEBP1Q8IUX7 1158 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 GBP4Q96PP9 640 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 ATAD2Q6PL18 1390 aa15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 NUDT16Q96DE0 195 aaKnown RBP15.09■□□□□ 0.01
CCDC88C-211ENST00000556726 ATP7AQ04656 1500 aa15.08■□□□□ 0
CCDC88C-211ENST00000556726 F6X3S4 739 aa15.08■□□□□ 0
CCDC88C-211ENST00000556726 NFE2L2Q16236 605 aa15.08■□□□□ 0
CCDC88C-211ENST00000556726 STK31Q9BXU1 1019 aa15.08■□□□□ 0
CCDC88C-211ENST00000556726 RTEL1-TNFRSF6BF6WH68 1400 aa15.08■□□□□ 0
CCDC88C-211ENST00000556726 FCHSD2O94868 740 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 ARID3AQ99856 593 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 DDX49Q9Y6V7 483 aaKnown RBP15.07■□□□□ 0
CCDC88C-211ENST00000556726 SLC4A2P04920 1241 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 TSHZ3Q63HK5 1081 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 POLKQ9UBT6 870 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 TSPYL4Q9UJ04 414 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 MYO5CQ9NQX4 1742 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 MCM4P33991 863 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 LMOD3Q0VAK6 560 aa15.07■□□□□ 0
CCDC88C-211ENST00000556726 FKBP5Q13451 457 aaPredicted RBP15.07■□□□□ 0
CCDC88C-211ENST00000556726 ANKRD36BQ8N2N9 1353 aa15.06■□□□□ 0
CCDC88C-211ENST00000556726 C8orf58Q8NAV2 365 aa15.06■□□□□ 0
CCDC88C-211ENST00000556726 MBIPQ9NS73 344 aa15.06■□□□□ 0
CCDC88C-211ENST00000556726 CEBPAP49715 358 aaPredicted RBP15.06■□□□□ 0
CCDC88C-211ENST00000556726 C16orf71Q8IYS4 520 aaPredicted RBP15.06■□□□□ 0
CCDC88C-211ENST00000556726 CHD1O14646 1710 aa15.06■□□□□ 0
CCDC88C-211ENST00000556726 NPATQ14207 1427 aa15.06■□□□□ 0
CCDC88C-211ENST00000556726 API5Q9BZZ5 524 aaKnown RBP15.05■□□□□ 0
CCDC88C-211ENST00000556726 HDGFP51858 240 aaKnown RBP15.05■□□□□ -0
CCDC88C-211ENST00000556726 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88C-211ENST00000556726 PANK2Q9BZ23 570 aa15.04■□□□□ -0
CCDC88C-211ENST00000556726 TRHP20396 242 aaPredicted RBP15.04■□□□□ -0
CCDC88C-211ENST00000556726 MCTP1Q6DN14 999 aa15.03■□□□□ -0
CCDC88C-211ENST00000556726 NINLQ9Y2I6 1382 aa15.03■□□□□ -0
CCDC88C-211ENST00000556726 NLRP6P59044 892 aa15.03■□□□□ -0
CCDC88C-211ENST00000556726 EXOC6BQ9Y2D4 811 aa15.03■□□□□ -0
CCDC88C-211ENST00000556726 HSP90AB2PQ58FF8 381 aa15.02■□□□□ -0
CCDC88C-211ENST00000556726 CCDC9Q9Y3X0 531 aaKnown RBP15.02■□□□□ -0
CCDC88C-211ENST00000556726 ABCC1P33527 1531 aa15.02■□□□□ -0
CCDC88C-211ENST00000556726 CCDC61Q9Y6R9 512 aa15.02□□□□□ -0.01
CCDC88C-211ENST00000556726 NPC1L1Q9UHC9 1359 aa15.02□□□□□ -0.01
CCDC88C-211ENST00000556726 MAP4K4O95819 1239 aaPredicted RBP15.02□□□□□ -0.01
CCDC88C-211ENST00000556726 INSRP06213 1382 aa15.01□□□□□ -0.01
CCDC88C-211ENST00000556726 ANO2Q9NQ90 1003 aa15.01□□□□□ -0.01
CCDC88C-211ENST00000556726 PTMAP06454 111 aaKnown RBP15.01□□□□□ -0.01
CCDC88C-211ENST00000556726 AAMPQ13685 434 aa15.01□□□□□ -0.01
CCDC88C-211ENST00000556726 CLTCL1P53675 1640 aa15.01□□□□□ -0.01
CCDC88C-211ENST00000556726 FOXO3O43524 673 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 CDC45O75419 566 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 TBC1D9Q6ZT07 1266 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 ZBTB40Q9NUA8 1239 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 ZNF518AQ6AHZ1 1483 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 DDX11L8A8MPP1 907 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 KCNJ4P48050 445 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 USHBP1Q8N6Y0 703 aa15□□□□□ -0.01
CCDC88C-211ENST00000556726 WASLO00401 505 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 HMMRO75330 724 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 MPNDQ8N594 471 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 CCDC27Q2M243 656 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 USP19O94966 1318 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 POLR1AO95602 1720 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 A0A0G2JS52 829 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 VAMP4O75379 141 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 OTUD7AQ8TE49 926 aaPredicted RBP14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 EID1Q9Y6B2 187 aa14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 ZCCHC11Q5TAX3 1644 aaKnown RBP14.99□□□□□ -0.01
CCDC88C-211ENST00000556726 CT47B1P0C2W7 299 aaPredicted RBP14.98□□□□□ -0.01
CCDC88C-211ENST00000556726 IL1RAPL2Q9NP60 686 aa14.98□□□□□ -0.01
CCDC88C-211ENST00000556726 IQGAP3Q86VI3 1631 aa14.98□□□□□ -0.01
CCDC88C-211ENST00000556726 SSFA2P28290 1259 aa14.98□□□□□ -0.01
CCDC88C-211ENST00000556726 TRPM2O94759 1503 aa14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 GCC1Q96CN9 775 aa14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 DTNBO60941 627 aa14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 TNPO1Q92973 898 aaKnown RBP14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 MEIS3Q99687 375 aa14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 RSPH6AQ9H0K4 717 aa14.97□□□□□ -0.01
CCDC88C-211ENST00000556726 HAP1P54257 671 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-211ENST00000556726 XPCQ01831 940 aaPredicted RBP14.96□□□□□ -0.01
CCDC88C-211ENST00000556726 NUCB1Q02818 461 aa14.96□□□□□ -0.01
CCDC88C-211ENST00000556726 ST18O60284 1047 aa14.96□□□□□ -0.01
CCDC88C-211ENST00000556726 CAVIN1Q6NZI2 390 aaKnown RBP14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms