RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 SPDYE5A6NIY4 337 aa10.14□□□□□ -0.79
PRPF39-210ENST00000556718 NNTQ13423 1086 aa10.14□□□□□ -0.79
PRPF39-210ENST00000556718 PARP9Q8IXQ6 854 aa10.14□□□□□ -0.79
PRPF39-210ENST00000556718 ZFP42Q96MM3 310 aa10.14□□□□□ -0.79
PRPF39-210ENST00000556718 VARSP26640 1264 aaKnown RBP10.13□□□□□ -0.79
PRPF39-210ENST00000556718 CTHP32929 405 aa10.13□□□□□ -0.79
PRPF39-210ENST00000556718 LYPD8Q6UX82 237 aa10.13□□□□□ -0.79
PRPF39-210ENST00000556718 GMPRP36959 345 aa10.12□□□□□ -0.79
PRPF39-210ENST00000556718 MAP10Q9P2G4 905 aa10.12□□□□□ -0.79
PRPF39-210ENST00000556718 HRCP23327 699 aa10.11□□□□□ -0.79
PRPF39-210ENST00000556718 SLC16A10Q8TF71 515 aa10.11□□□□□ -0.79
PRPF39-210ENST00000556718 FOXJ1Q92949 421 aa10.11□□□□□ -0.79
PRPF39-210ENST00000556718 PLEKHG3A1L390 1219 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 TRIM66O15016 1216 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 SPTLC1O15269 473 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 TIMP2P16035 220 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 GJA5P36382 358 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 MPNDQ8N594 471 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 CABLES1Q8TDN4 633 aa10.1□□□□□ -0.79
PRPF39-210ENST00000556718 F12P00748 615 aaPredicted RBP10.09□□□□□ -0.79
PRPF39-210ENST00000556718 LORP23490 312 aaPredicted RBP10.09□□□□□ -0.79
PRPF39-210ENST00000556718 WDR4P57081 412 aaKnown RBP10.09□□□□□ -0.79
PRPF39-210ENST00000556718 ERBB4Q15303 1308 aa10.08□□□□□ -0.8
PRPF39-210ENST00000556718 SOBPA7XYQ1 873 aa10.08□□□□□ -0.8
PRPF39-210ENST00000556718 CSPP1Q1MSJ5 1256 aa10.08□□□□□ -0.8
PRPF39-210ENST00000556718 MRPL14Q6P1L8 145 aaKnown RBP10.08□□□□□ -0.8
PRPF39-210ENST00000556718 KLF16Q9BXK1 252 aaPredicted RBP10.08□□□□□ -0.8
PRPF39-210ENST00000556718 H3BM21 787 aa10.07□□□□□ -0.8
PRPF39-210ENST00000556718 PER1O15534 1290 aaPredicted RBP10.07□□□□□ -0.8
PRPF39-210ENST00000556718 C4orf48Q5BLP8 95 aa10.07□□□□□ -0.8
PRPF39-210ENST00000556718 RIC3Q7Z5B4 369 aa10.07□□□□□ -0.8
PRPF39-210ENST00000556718 PURBQ96QR8 312 aaKnown RBP10.07□□□□□ -0.8
PRPF39-210ENST00000556718 ZBTB3Q9H5J0 574 aa10.07□□□□□ -0.8
PRPF39-210ENST00000556718 DIXDC1Q155Q3 683 aa10.06□□□□□ -0.8
PRPF39-210ENST00000556718 FAM174AQ8TBP5 190 aa10.06□□□□□ -0.8
PRPF39-210ENST00000556718 IRF7Q92985 503 aa10.06□□□□□ -0.8
PRPF39-210ENST00000556718 ADH1CP00326 375 aa10.05□□□□□ -0.8
PRPF39-210ENST00000556718 ARID5BQ14865 1188 aa10.05□□□□□ -0.8
PRPF39-210ENST00000556718 NPAS3Q8IXF0 933 aa10.05□□□□□ -0.8
PRPF39-210ENST00000556718 CDK15Q96Q40 435 aa10.05□□□□□ -0.8
PRPF39-210ENST00000556718 ZFAND3Q9H8U3 227 aa10.05□□□□□ -0.8
PRPF39-210ENST00000556718 LIMD1Q9UGP4 676 aa10.04□□□□□ -0.8
PRPF39-210ENST00000556718 NR3C2P08235 984 aa10.02□□□□□ -0.81
PRPF39-210ENST00000556718 SCARF1Q14162 830 aa10.02□□□□□ -0.81
PRPF39-210ENST00000556718 QPCTQ16769 361 aa10.02□□□□□ -0.81
PRPF39-210ENST00000556718 PRPF38BQ5VTL8 546 aaKnown RBP10.02□□□□□ -0.81
PRPF39-210ENST00000556718 ITPKCQ96DU7 683 aa10.02□□□□□ -0.81
PRPF39-210ENST00000556718 AK7Q96M32 723 aa10.02□□□□□ -0.81
PRPF39-210ENST00000556718 ZIC2O95409 532 aaPredicted RBP10.01□□□□□ -0.81
PRPF39-210ENST00000556718 ZSCAN1Q8NBB4 408 aa10.01□□□□□ -0.81
PRPF39-210ENST00000556718 TSC1Q92574 1164 aa10.01□□□□□ -0.81
PRPF39-210ENST00000556718 GRM5P41594 1212 aa10□□□□□ -0.81
PRPF39-210ENST00000556718 AGERQ15109 404 aa10□□□□□ -0.81
PRPF39-210ENST00000556718 MYSM1Q5VVJ2 828 aa10□□□□□ -0.81
PRPF39-210ENST00000556718 C6orf118Q5T5N4 469 aa9.99□□□□□ -0.81
PRPF39-210ENST00000556718 NUTM2BA6NNL0 878 aaPredicted RBP9.97□□□□□ -0.81
PRPF39-210ENST00000556718 NUTM2EB1AL46 878 aaPredicted RBP9.97□□□□□ -0.81
PRPF39-210ENST00000556718 NR5A1Q13285 461 aa9.97□□□□□ -0.81
PRPF39-210ENST00000556718 NUTM2DQ5VT03 806 aaPredicted RBP9.97□□□□□ -0.81
PRPF39-210ENST00000556718 NUTM2AQ8IVF1 878 aaPredicted RBP9.97□□□□□ -0.81
PRPF39-210ENST00000556718 LILRB3O75022 631 aa9.96□□□□□ -0.82
PRPF39-210ENST00000556718 PDE4DQ08499 809 aa9.96□□□□□ -0.82
PRPF39-210ENST00000556718 RTL5Q5HYW3 569 aaPredicted RBP9.96□□□□□ -0.82
PRPF39-210ENST00000556718 BPHLQ86WA6 291 aaPredicted RBP9.96□□□□□ -0.82
PRPF39-210ENST00000556718 C1QTNF2Q9BXJ5 285 aa9.95□□□□□ -0.82
PRPF39-210ENST00000556718 FAM181BA6NEQ2 426 aa9.94□□□□□ -0.82
PRPF39-210ENST00000556718 SH3RF1Q7Z6J0 888 aa9.94□□□□□ -0.82
PRPF39-210ENST00000556718 TUSC1Q2TAM9 212 aa9.93□□□□□ -0.82
PRPF39-210ENST00000556718 MAN1A2O60476 641 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 VSIG8P0DPA2 414 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 BMP2P12643 396 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 FSHRP23945 695 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 SH3BP5LQ7L8J4 393 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 LINC00528Q8N1L1 170 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 MEIOBQ8N635 442 aa9.92□□□□□ -0.82
PRPF39-210ENST00000556718 SLC24A3Q9HC58 644 aa9.91□□□□□ -0.82
PRPF39-210ENST00000556718 MAGEB6P1A0A0J9YX57 407 aa9.9□□□□□ -0.82
PRPF39-210ENST00000556718 PPFIA3O75145 1194 aa9.89□□□□□ -0.83
PRPF39-210ENST00000556718 VASH1Q7L8A9 365 aaPredicted RBP9.89□□□□□ -0.83
PRPF39-210ENST00000556718 ARMC2Q8NEN0 867 aa9.89□□□□□ -0.83
PRPF39-210ENST00000556718 DNMT3LQ9UJW3 386 aa9.89□□□□□ -0.83
PRPF39-210ENST00000556718 SOS2Q07890 1332 aaPredicted RBP9.88□□□□□ -0.83
PRPF39-210ENST00000556718 CLK2P49760 499 aaKnown RBP9.88□□□□□ -0.83
PRPF39-210ENST00000556718 NBPF14Q5TI25 921 aa9.88□□□□□ -0.83
PRPF39-210ENST00000556718 HELBQ8NG08 1087 aaPredicted RBP9.88□□□□□ -0.83
PRPF39-210ENST00000556718 CARD14Q9BXL6 1004 aa9.88□□□□□ -0.83
PRPF39-210ENST00000556718 POLR3EQ9NVU0 708 aa9.88□□□□□ -0.83
PRPF39-210ENST00000556718 MAP4K5Q9Y4K4 846 aa9.88□□□□□ -0.83
PRPF39-210ENST00000556718 UPP2O95045 317 aa9.87□□□□□ -0.83
PRPF39-210ENST00000556718 TRMT44Q8IYL2 757 aaKnown RBP9.87□□□□□ -0.83
PRPF39-210ENST00000556718 CTDSPL2Q05D32 466 aa9.85□□□□□ -0.83
PRPF39-210ENST00000556718 CCDC116Q8IYX3 515 aa9.85□□□□□ -0.83
PRPF39-210ENST00000556718 ERFEQ4G0M1 354 aa9.84□□□□□ -0.83
PRPF39-210ENST00000556718 FBXO31Q5XUX0 539 aaPredicted RBP9.84□□□□□ -0.83
PRPF39-210ENST00000556718 EMILIN1Q9Y6C2 1016 aa9.84□□□□□ -0.83
PRPF39-210ENST00000556718 CBLBQ13191 982 aa9.83□□□□□ -0.84
PRPF39-210ENST00000556718 GPR161Q8N6U8 529 aaKnown RBP9.82□□□□□ -0.84
PRPF39-210ENST00000556718 LRRN4Q8WUT4 740 aa9.82□□□□□ -0.84
PRPF39-210ENST00000556718 TSEN34Q9BSV6 310 aaKnown RBP9.82□□□□□ -0.84
PRPF39-210ENST00000556718 FIGNL2A6NMB9 653 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms