RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 FAM193AP78312 1265 aa6.61□□□□□ -1.35
TMEM260-210ENST00000556422 ANKRD36BQ8N2N9 1353 aa6.61□□□□□ -1.35
TMEM260-210ENST00000556422 UBR1Q8IWV7 1749 aa6.61□□□□□ -1.35
TMEM260-210ENST00000556422 PIAS4Q8N2W9 510 aaPredicted RBP6.6□□□□□ -1.35
TMEM260-210ENST00000556422 POLR3AO14802 1390 aaPredicted RBP6.6□□□□□ -1.35
TMEM260-210ENST00000556422 ZBTB7CA1YPR0 619 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 RRP1P56182 461 aaKnown RBP6.6□□□□□ -1.35
TMEM260-210ENST00000556422 NLRP1Q9C000 1473 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 PPM1GO15355 546 aaPredicted RBP6.6□□□□□ -1.35
TMEM260-210ENST00000556422 NBR1Q14596 966 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 RCAN3Q9UKA8 241 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 DLC1Q96QB1 1528 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 A0A1W2PP64 1363 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 EVC2Q86UK5 1308 aa6.6□□□□□ -1.35
TMEM260-210ENST00000556422 KNDC1Q76NI1 1749 aa6.59□□□□□ -1.35
TMEM260-210ENST00000556422 KIF20BQ96Q89 1820 aa6.59□□□□□ -1.35
TMEM260-210ENST00000556422 SAFB2Q14151 953 aaKnown RBP eCLIP6.59□□□□□ -1.35
TMEM260-210ENST00000556422 WDR43Q15061 677 aaKnown RBP eCLIP6.59□□□□□ -1.35
TMEM260-210ENST00000556422 CABP2Q9NPB3 220 aa6.59□□□□□ -1.35
TMEM260-210ENST00000556422 RBM19Q9Y4C8 960 aaKnown RBP6.59□□□□□ -1.35
TMEM260-210ENST00000556422 IQSEC2Q5JU85 1478 aa6.59□□□□□ -1.35
TMEM260-210ENST00000556422 RIMS2Q9UQ26 1411 aa6.59□□□□□ -1.36
TMEM260-210ENST00000556422 ZMYM3Q14202 1370 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 ABCC11Q96J66 1382 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 MLECQ14165 292 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 DUSP27Q5VZP5 1158 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 STK26Q9P289 416 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 CERS3Q8IU89 383 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 CCDC146Q8IYE0 955 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 PRAM1Q96QH2 718 aa6.58□□□□□ -1.36
TMEM260-210ENST00000556422 SPINK5Q9NQ38 1064 aaPredicted RBP6.57□□□□□ -1.36
TMEM260-210ENST00000556422 NINLQ9Y2I6 1382 aa6.57□□□□□ -1.36
TMEM260-210ENST00000556422 CGNL1Q0VF96 1302 aa6.57□□□□□ -1.36
TMEM260-210ENST00000556422 NSD2O96028 1365 aa6.57□□□□□ -1.36
TMEM260-210ENST00000556422 TRMT2AQ8IZ69 625 aaKnown RBP6.57□□□□□ -1.36
TMEM260-210ENST00000556422 DMRT2Q9Y5R5 561 aa6.57□□□□□ -1.36
TMEM260-210ENST00000556422 COL3A1P02461 1466 aaPredicted RBP6.57□□□□□ -1.36
TMEM260-210ENST00000556422 ADGRB2O60241 1585 aa6.57□□□□□ -1.36
TMEM260-210ENST00000556422 APAF1O14727 1248 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 MINK1Q8N4C8 1332 aaPredicted RBP6.56□□□□□ -1.36
TMEM260-210ENST00000556422 C3P01024 1663 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 MED14O60244 1454 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 EXOC6Q8TAG9 804 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 ATAD2Q6PL18 1390 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 CPS1P31327 1500 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 NEFMP07197 916 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 TNNT2P45379 298 aaPredicted RBP6.56□□□□□ -1.36
TMEM260-210ENST00000556422 MORC1Q86VD1 984 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 METP08581 1390 aa6.56□□□□□ -1.36
TMEM260-210ENST00000556422 PLIN1O60240 522 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 SLFN5Q08AF3 891 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 FAM43BQ6ZT52 329 aaPredicted RBP6.55□□□□□ -1.36
TMEM260-210ENST00000556422 STAG3Q9UJ98 1225 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 MON2Q7Z3U7 1717 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 MAP2P11137 1827 aaKnown RBP6.55□□□□□ -1.36
TMEM260-210ENST00000556422 GTF2E1P29083 439 aaPredicted RBP6.55□□□□□ -1.36
TMEM260-210ENST00000556422 MTHFSP49914 203 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 SRPK2P78362 688 aaKnown RBP6.55□□□□□ -1.36
TMEM260-210ENST00000556422 GOLGA2Q08379 1002 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 TECPR2O15040 1411 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 AKAP12Q02952 1782 aa6.55□□□□□ -1.36
TMEM260-210ENST00000556422 FER1L4A9Z1Z3 1794 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 ZNF428Q96B54 188 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 NKTRP30414 1462 aaKnown RBP6.54□□□□□ -1.36
TMEM260-210ENST00000556422 WAPLQ7Z5K2 1190 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 ATP7BP35670 1465 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 TNRQ92752 1358 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 C20orf194Q5TEA3 1177 aa6.54□□□□□ -1.36
TMEM260-210ENST00000556422 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.53□□□□□ -1.36
TMEM260-210ENST00000556422 FYB1O15117 783 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 CDK19Q9BWU1 502 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 POGKQ9P215 609 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 ADAMTS13Q76LX8 1427 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 KCNG1Q9UIX4 513 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 TOPAZ1Q8N9V7 1692 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 TMEM2Q9UHN6 1383 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 RRP9O43818 475 aaKnown RBP6.53□□□□□ -1.36
TMEM260-210ENST00000556422 HSP90AA1P07900 732 aaKnown RBP6.53□□□□□ -1.36
TMEM260-210ENST00000556422 GGNBP2Q9H3C7 697 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 ITSN1Q15811 1721 aa6.53□□□□□ -1.36
TMEM260-210ENST00000556422 RBM25P49756 843 aaKnown RBP6.52□□□□□ -1.36
TMEM260-210ENST00000556422 CPSF1Q10570 1443 aaKnown RBP6.52□□□□□ -1.37
TMEM260-210ENST00000556422 CDC42BPGQ6DT37 1551 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 FAM135BQ49AJ0 1406 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 NRKQ7Z2Y5 1582 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 ANAPC15P60006 121 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 GPATCH11Q8N954 259 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 CABP1Q9NZU7 370 aa6.52□□□□□ -1.37
TMEM260-210ENST00000556422 RGS3P49796 1198 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 CRBNQ96SW2 442 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 PNPLA6Q8IY17 1366 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 CLGNO14967 610 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 NGEFQ8N5V2 710 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 RUNDC1Q96C34 613 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 PRDM16Q9HAZ2 1276 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 ILDR1Q86SU0 546 aaPredicted RBP6.51□□□□□ -1.37
TMEM260-210ENST00000556422 TCP11L2Q8N4U5 519 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 TERF2IPQ9NYB0 399 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 SLIT1O75093 1534 aa6.51□□□□□ -1.37
TMEM260-210ENST00000556422 E9PSI1 815 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms