RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 CDC42BPAQ5VT25 1732 aa18.46■□□□□ 0.55
CUX1-215ENST00000556210 ADGBQ8N7X0 1667 aa18.46■□□□□ 0.55
CUX1-215ENST00000556210 PLCB2Q00722 1185 aa18.46■□□□□ 0.55
CUX1-215ENST00000556210 TSPYL6Q8N831 410 aa18.46■□□□□ 0.54
CUX1-215ENST00000556210 SLC4A2P04920 1241 aa18.45■□□□□ 0.54
CUX1-215ENST00000556210 CCDC9Q9Y3X0 531 aaKnown RBP18.45■□□□□ 0.54
CUX1-215ENST00000556210 CCDC61Q9Y6R9 512 aa18.44■□□□□ 0.54
CUX1-215ENST00000556210 ATP10AO60312 1499 aa18.44■□□□□ 0.54
CUX1-215ENST00000556210 FCHSD2O94868 740 aa18.43■□□□□ 0.54
CUX1-215ENST00000556210 AEBP1Q8IUX7 1158 aa18.43■□□□□ 0.54
CUX1-215ENST00000556210 XPCQ01831 940 aaPredicted RBP18.43■□□□□ 0.54
CUX1-215ENST00000556210 SMARCA5O60264 1052 aaPredicted RBP18.42■□□□□ 0.54
CUX1-215ENST00000556210 KCNJ4P48050 445 aa18.42■□□□□ 0.54
CUX1-215ENST00000556210 F6X3S4 739 aa18.42■□□□□ 0.54
CUX1-215ENST00000556210 NFE2L2Q16236 605 aa18.42■□□□□ 0.54
CUX1-215ENST00000556210 API5Q9BZZ5 524 aaKnown RBP18.42■□□□□ 0.54
CUX1-215ENST00000556210 ZNF330Q9Y3S2 320 aaPredicted RBP18.42■□□□□ 0.54
CUX1-215ENST00000556210 KDM2BQ8NHM5 1336 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 HAP1P54257 671 aaPredicted RBP18.41■□□□□ 0.54
CUX1-215ENST00000556210 A0A1W2PP64 1363 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 KDM5DQ9BY66 1539 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 ATAD2Q6PL18 1390 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 CHD1LQ86WJ1 897 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 TBC1D2Q9BYX2 928 aa18.41■□□□□ 0.54
CUX1-215ENST00000556210 POLKQ9UBT6 870 aa18.4■□□□□ 0.54
CUX1-215ENST00000556210 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.4■□□□□ 0.54
CUX1-215ENST00000556210 MAST1Q9Y2H9 1570 aa18.39■□□□□ 0.54
CUX1-215ENST00000556210 USHBP1Q8N6Y0 703 aa18.39■□□□□ 0.53
CUX1-215ENST00000556210 BLMP54132 1417 aaPredicted RBP18.39■□□□□ 0.53
CUX1-215ENST00000556210 HSP90AB2PQ58FF8 381 aa18.39■□□□□ 0.53
CUX1-215ENST00000556210 ABTB2Q8N961 1025 aa18.39■□□□□ 0.53
CUX1-215ENST00000556210 WASLO00401 505 aaPredicted RBP18.38■□□□□ 0.53
CUX1-215ENST00000556210 FAM43AQ8N2R8 423 aa18.38■□□□□ 0.53
CUX1-215ENST00000556210 GBP4Q96PP9 640 aa18.38■□□□□ 0.53
CUX1-215ENST00000556210 ARHGEF5Q12774 1597 aa18.38■□□□□ 0.53
CUX1-215ENST00000556210 PIK3C2GO75747 1445 aa18.38■□□□□ 0.53
CUX1-215ENST00000556210 POLR3AO14802 1390 aaPredicted RBP18.38■□□□□ 0.53
CUX1-215ENST00000556210 MBIPQ9NS73 344 aa18.38■□□□□ 0.53
CUX1-215ENST00000556210 CHMP5Q9NZZ3 219 aa18.37■□□□□ 0.53
CUX1-215ENST00000556210 HMMRO75330 724 aa18.37■□□□□ 0.53
CUX1-215ENST00000556210 C8orf58Q8NAV2 365 aa18.37■□□□□ 0.53
CUX1-215ENST00000556210 CSB-PGBD3P0DP91 1061 aa18.37■□□□□ 0.53
CUX1-215ENST00000556210 TSHZ3Q63HK5 1081 aa18.36■□□□□ 0.53
CUX1-215ENST00000556210 ATP7AQ04656 1500 aa18.36■□□□□ 0.53
CUX1-215ENST00000556210 ANKRD36BQ8N2N9 1353 aa18.36■□□□□ 0.53
CUX1-215ENST00000556210 NPATQ14207 1427 aa18.35■□□□□ 0.53
CUX1-215ENST00000556210 PTPRTO14522 1441 aa18.35■□□□□ 0.53
CUX1-215ENST00000556210 TRIM35Q9UPQ4 493 aa18.35■□□□□ 0.53
CUX1-215ENST00000556210 DDX49Q9Y6V7 483 aaKnown RBP18.35■□□□□ 0.53
CUX1-215ENST00000556210 ZNF521Q96K83 1311 aa18.35■□□□□ 0.53
CUX1-215ENST00000556210 NAP1L2Q9ULW6 460 aaPredicted RBP18.35■□□□□ 0.53
CUX1-215ENST00000556210 ZNF518AQ6AHZ1 1483 aa18.35■□□□□ 0.53
CUX1-215ENST00000556210 ANO2Q9NQ90 1003 aa18.34■□□□□ 0.53
CUX1-215ENST00000556210 EXOC6BQ9Y2D4 811 aa18.34■□□□□ 0.53
CUX1-215ENST00000556210 ZMYM4Q5VZL5 1548 aa18.34■□□□□ 0.53
CUX1-215ENST00000556210 MAP4K4O95819 1239 aaPredicted RBP18.33■□□□□ 0.53
CUX1-215ENST00000556210 PSME1Q06323 249 aa18.33■□□□□ 0.53
CUX1-215ENST00000556210 FOXO3O43524 673 aa18.33■□□□□ 0.52
CUX1-215ENST00000556210 AIMP1Q12904 312 aaKnown RBP18.33■□□□□ 0.52
CUX1-215ENST00000556210 C16orf71Q8IYS4 520 aaPredicted RBP18.33■□□□□ 0.52
CUX1-215ENST00000556210 RBM42Q9BTD8 480 aaKnown RBP18.33■□□□□ 0.52
CUX1-215ENST00000556210 TEFQ10587 303 aa18.32■□□□□ 0.52
CUX1-215ENST00000556210 TRAK2O60296 914 aa18.32■□□□□ 0.52
CUX1-215ENST00000556210 PTMAP06454 111 aaKnown RBP18.32■□□□□ 0.52
CUX1-215ENST00000556210 ERVK-7P63135 1459 aa18.31■□□□□ 0.52
CUX1-215ENST00000556210 IL1RAPL2Q9NP60 686 aa18.31■□□□□ 0.52
CUX1-215ENST00000556210 EIF2AK4Q9P2K8 1649 aaKnown RBP18.31■□□□□ 0.52
CUX1-215ENST00000556210 CHMP3Q9Y3E7 222 aa18.3■□□□□ 0.52
CUX1-215ENST00000556210 CHD1O14646 1710 aa18.29■□□□□ 0.52
CUX1-215ENST00000556210 PREX2Q70Z35 1606 aa18.29■□□□□ 0.52
CUX1-215ENST00000556210 ESCO1Q5FWF5 840 aa18.29■□□□□ 0.52
CUX1-215ENST00000556210 ARID3AQ99856 593 aa18.29■□□□□ 0.52
CUX1-215ENST00000556210 MCTP1Q6DN14 999 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 KIAA1211Q6ZU35 1233 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 TBC1D32Q96NH3 1257 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 CDC45O75419 566 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 MCCP23508 829 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 AAMPQ13685 434 aa18.28■□□□□ 0.52
CUX1-215ENST00000556210 HSP90AA2PQ14568 343 aaPredicted RBP18.28■□□□□ 0.52
CUX1-215ENST00000556210 CDC42BPBQ9Y5S2 1711 aa18.27■□□□□ 0.52
CUX1-215ENST00000556210 ACEP12821 1306 aa18.27■□□□□ 0.52
CUX1-215ENST00000556210 TRMT2AQ8IZ69 625 aaKnown RBP18.27■□□□□ 0.52
CUX1-215ENST00000556210 FGD1P98174 961 aa18.27■□□□□ 0.51
CUX1-215ENST00000556210 AMOTL2Q9Y2J4 779 aa18.27■□□□□ 0.51
CUX1-215ENST00000556210 MYO5CQ9NQX4 1742 aa18.27■□□□□ 0.51
CUX1-215ENST00000556210 ST18O60284 1047 aa18.27■□□□□ 0.51
CUX1-215ENST00000556210 ANXA1P04083 346 aa18.27■□□□□ 0.51
CUX1-215ENST00000556210 CT47B1P0C2W7 299 aaPredicted RBP18.27■□□□□ 0.51
CUX1-215ENST00000556210 YEATS2Q9ULM3 1422 aa18.26■□□□□ 0.51
CUX1-215ENST00000556210 ZNF692Q9BU19 519 aaPredicted RBP18.26■□□□□ 0.51
CUX1-215ENST00000556210 VAMP4O75379 141 aa18.26■□□□□ 0.51
CUX1-215ENST00000556210 VSIG10Q8N0Z9 540 aa18.26■□□□□ 0.51
CUX1-215ENST00000556210 SURF6O75683 361 aaKnown RBP18.25■□□□□ 0.51
CUX1-215ENST00000556210 MCM4P33991 863 aa18.25■□□□□ 0.51
CUX1-215ENST00000556210 DDX11L8A8MPP1 907 aa18.25■□□□□ 0.51
CUX1-215ENST00000556210 GCC1Q96CN9 775 aa18.25■□□□□ 0.51
CUX1-215ENST00000556210 NINLQ9Y2I6 1382 aa18.25■□□□□ 0.51
CUX1-215ENST00000556210 NEK4P51957 841 aa18.24■□□□□ 0.51
CUX1-215ENST00000556210 MEIS3Q99687 375 aa18.24■□□□□ 0.51
CUX1-215ENST00000556210 C9orf78Q9NZ63 289 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 1176.5 ms