RNA–Protein interactions for RNA: ENST00000555837.5

CDKN3-208, Transcript of cyclin dependent kinase inhibitor 3, human

TSL 2

Gene CDKN3, Length 689 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDKN3-208	ENST00000555837	RGS17	Q9UGC6	210 aa	Predicted RBP	32.04	■■■□□ 2.72
CDKN3-208	ENST00000555837	NINL	Q9Y2I6	1382 aa		32.04	■■■□□ 2.72
CDKN3-208	ENST00000555837	TESK2	Q96S53	571 aa		32.02	■■■□□ 2.72
CDKN3-208	ENST00000555837	ABTB2	Q8N961	1025 aa		32.01	■■■□□ 2.71
CDKN3-208	ENST00000555837	ALS2	Q96Q42	1657 aa		32.01	■■■□□ 2.71
CDKN3-208	ENST00000555837	TERF2IP	Q9NYB0	399 aa		32	■■■□□ 2.71
CDKN3-208	ENST00000555837	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	31.99	■■■□□ 2.71
CDKN3-208	ENST00000555837	NLRP13	Q86W25	1043 aa		31.99	■■■□□ 2.71
CDKN3-208	ENST00000555837	FNBP4	Q8N3X1	1017 aa	Predicted RBP	31.99	■■■□□ 2.71
CDKN3-208	ENST00000555837	TMC1	Q8TDI8	760 aa		31.99	■■■□□ 2.71
CDKN3-208	ENST00000555837	USP6	P35125	1406 aa		31.99	■■■□□ 2.71
CDKN3-208	ENST00000555837	EIF4G2	P78344	907 aa	Known RBP eCLIP	31.98	■■■□□ 2.71
CDKN3-208	ENST00000555837	USP21	Q9UK80	565 aa		31.97	■■■□□ 2.71
CDKN3-208	ENST00000555837	ILDR2	Q71H61	639 aa		31.96	■■■□□ 2.71
CDKN3-208	ENST00000555837	MARF1	Q9Y4F3	1742 aa	Known RBP	31.96	■■■□□ 2.71
CDKN3-208	ENST00000555837	TTC21A	Q8NDW8	1320 aa		31.95	■■■□□ 2.7
CDKN3-208	ENST00000555837	POTEA	Q6S8J7	498 aa		31.94	■■■□□ 2.7
CDKN3-208	ENST00000555837	CABLES1	Q8TDN4	633 aa		31.94	■■■□□ 2.7
CDKN3-208	ENST00000555837	KTN1	Q86UP2	1357 aa	Known RBP	31.94	■■■□□ 2.7
CDKN3-208	ENST00000555837	RXRB	P28702	533 aa		31.93	■■■□□ 2.7
CDKN3-208	ENST00000555837	TRPC5	Q9UL62	973 aa	Predicted RBP	31.93	■■■□□ 2.7
CDKN3-208	ENST00000555837	QTRT2	Q9H974	415 aa	Known RBP	31.92	■■■□□ 2.7
CDKN3-208	ENST00000555837	PLEKHG5	O94827	1062 aa		31.91	■■■□□ 2.7
CDKN3-208	ENST00000555837	CPSF1	Q10570	1443 aa	Known RBP	31.91	■■■□□ 2.7
CDKN3-208	ENST00000555837	RBM6	P78332	1123 aa	Known RBP	31.88	■■■□□ 2.69
CDKN3-208	ENST00000555837	NLRP6	P59044	892 aa		31.87	■■■□□ 2.69
CDKN3-208	ENST00000555837	AKAP12	Q02952	1782 aa		31.86	■■■□□ 2.69
CDKN3-208	ENST00000555837	ABCA3	Q99758	1704 aa		31.86	■■■□□ 2.69
CDKN3-208	ENST00000555837	TTC21B	Q7Z4L5	1316 aa		31.86	■■■□□ 2.69
CDKN3-208	ENST00000555837	UNC5CL	Q8IV45	518 aa		31.86	■■■□□ 2.69
CDKN3-208	ENST00000555837	SLC12A5	Q9H2X9	1139 aa		31.86	■■■□□ 2.69
CDKN3-208	ENST00000555837	PRDM11	Q9NQV5	511 aa		31.85	■■■□□ 2.69
CDKN3-208	ENST00000555837	SSH2	Q76I76	1423 aa		31.84	■■■□□ 2.69
CDKN3-208	ENST00000555837	SOCS7	O14512	581 aa		31.83	■■■□□ 2.69
CDKN3-208	ENST00000555837	NUTM2G	Q5VZR2	741 aa		31.83	■■■□□ 2.69
CDKN3-208	ENST00000555837	USP19	O94966	1318 aa		31.82	■■■□□ 2.68
CDKN3-208	ENST00000555837	SLIT2	O94813	1529 aa		31.82	■■■□□ 2.68
CDKN3-208	ENST00000555837	KCNH5	Q8NCM2	988 aa		31.82	■■■□□ 2.68
CDKN3-208	ENST00000555837	CDK12	Q9NYV4	1490 aa	Predicted RBP	31.82	■■■□□ 2.68
CDKN3-208	ENST00000555837	EDC4	Q6P2E9	1401 aa	Known RBP	31.81	■■■□□ 2.68
CDKN3-208	ENST00000555837	NWD2	Q9ULI1	1742 aa		31.8	■■■□□ 2.68
CDKN3-208	ENST00000555837	BCL9L	Q86UU0	1499 aa		31.79	■■■□□ 2.68
CDKN3-208	ENST00000555837	COL14A1	Q05707	1796 aa	Known RBP	31.79	■■■□□ 2.68
CDKN3-208	ENST00000555837	FAM83G	A6ND36	823 aa		31.79	■■■□□ 2.68
CDKN3-208	ENST00000555837	GC	P02774	474 aa		31.79	■■■□□ 2.68
CDKN3-208	ENST00000555837	MON2	Q7Z3U7	1717 aa		31.78	■■■□□ 2.68
CDKN3-208	ENST00000555837	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	31.78	■■■□□ 2.68
CDKN3-208	ENST00000555837	ATRN	O75882	1429 aa		31.77	■■■□□ 2.68
CDKN3-208	ENST00000555837	HSPA5	P11021	654 aa	Known RBP	31.77	■■■□□ 2.68
CDKN3-208	ENST00000555837	CPD	O75976	1380 aa		31.77	■■■□□ 2.68
CDKN3-208	ENST00000555837	ANKRD36B	Q8N2N9	1353 aa		31.77	■■■□□ 2.68
CDKN3-208	ENST00000555837	CRYBG1	Q9Y4K1	1723 aa		31.77	■■■□□ 2.68
CDKN3-208	ENST00000555837	PHRF1	Q9P1Y6	1649 aa	Known RBP	31.76	■■■□□ 2.67
CDKN3-208	ENST00000555837		A0A1W2PP64	1363 aa		31.76	■■■□□ 2.67
CDKN3-208	ENST00000555837	KIAA0232	Q92628	1395 aa		31.75	■■■□□ 2.67
CDKN3-208	ENST00000555837	CD163L1	Q9NR16	1453 aa		31.74	■■■□□ 2.67
CDKN3-208	ENST00000555837	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	31.74	■■■□□ 2.67
CDKN3-208	ENST00000555837	GJD4	Q96KN9	370 aa	Predicted RBP	31.74	■■■□□ 2.67
CDKN3-208	ENST00000555837	BTG4	Q9NY30	223 aa		31.74	■■■□□ 2.67
CDKN3-208	ENST00000555837	ZC3H6	P61129	1189 aa	Known RBP	31.73	■■■□□ 2.67
CDKN3-208	ENST00000555837	VPS72	Q15906	364 aa		31.73	■■■□□ 2.67
CDKN3-208	ENST00000555837	NRK	Q7Z2Y5	1582 aa		31.73	■■■□□ 2.67
CDKN3-208	ENST00000555837	PLCH1	Q4KWH8	1693 aa		31.72	■■■□□ 2.67
CDKN3-208	ENST00000555837	USP31	Q70CQ4	1352 aa		31.71	■■■□□ 2.67
CDKN3-208	ENST00000555837	CCDC9	Q9Y3X0	531 aa	Known RBP	31.71	■■■□□ 2.67
CDKN3-208	ENST00000555837	PIK3C2A	O00443	1686 aa		31.7	■■■□□ 2.67
CDKN3-208	ENST00000555837	SLIT3	O75094	1523 aa		31.69	■■■□□ 2.66
CDKN3-208	ENST00000555837	EVA1C	P58658	441 aa		31.68	■■■□□ 2.66
CDKN3-208	ENST00000555837	COG3	Q96JB2	828 aa		31.64	■■■□□ 2.66
CDKN3-208	ENST00000555837	POLR3GL	Q9BT43	218 aa		31.64	■■■□□ 2.66
CDKN3-208	ENST00000555837	CHRNA2	Q15822	529 aa		31.63	■■■□□ 2.65
CDKN3-208	ENST00000555837	AATK	Q6ZMQ8	1374 aa		31.63	■■■□□ 2.65
CDKN3-208	ENST00000555837	NME9	Q86XW9	330 aa		31.62	■■■□□ 2.65
CDKN3-208	ENST00000555837	USP54	Q70EL1	1684 aa		31.6	■■■□□ 2.65
CDKN3-208	ENST00000555837	ZBTB7C	A1YPR0	619 aa		31.58	■■■□□ 2.65
CDKN3-208	ENST00000555837	STRN4	Q9NRL3	753 aa		31.58	■■■□□ 2.65
CDKN3-208	ENST00000555837	NRAP	Q86VF7	1730 aa		31.58	■■■□□ 2.65
CDKN3-208	ENST00000555837	ARHGEF25	Q86VW2	580 aa		31.57	■■■□□ 2.64
CDKN3-208	ENST00000555837	RGS12	O14924	1447 aa		31.57	■■■□□ 2.64
CDKN3-208	ENST00000555837	SOX12	O15370	315 aa		31.55	■■■□□ 2.64
CDKN3-208	ENST00000555837	ABCC6	O95255	1503 aa		31.54	■■■□□ 2.64
CDKN3-208	ENST00000555837	SPATA31A5	Q5VU36	1347 aa		31.54	■■■□□ 2.64
CDKN3-208	ENST00000555837	SPATA31A7	Q8IWB4	1347 aa		31.54	■■■□□ 2.64
CDKN3-208	ENST00000555837	OVOS2	A0A0J9YW53	1432 aa		31.53	■■■□□ 2.64
CDKN3-208	ENST00000555837	OVOS2	Q6IE36	1432 aa		31.53	■■■□□ 2.64
CDKN3-208	ENST00000555837	ONECUT3	O60422	494 aa	Predicted RBP	31.53	■■■□□ 2.64
CDKN3-208	ENST00000555837	CGNL1	Q0VF96	1302 aa		31.52	■■■□□ 2.64
CDKN3-208	ENST00000555837	THRAP3	Q9Y2W1	955 aa	Known RBP	31.52	■■■□□ 2.64
CDKN3-208	ENST00000555837		A0A0G2JS52	829 aa		31.51	■■■□□ 2.63
CDKN3-208	ENST00000555837	MYT1	Q01538	1121 aa		31.51	■■■□□ 2.63
CDKN3-208	ENST00000555837	MYOM1	P52179	1685 aa		31.51	■■■□□ 2.63
CDKN3-208	ENST00000555837	LMO7	Q8WWI1	1683 aa		31.51	■■■□□ 2.63
CDKN3-208	ENST00000555837	GLI3	P10071	1580 aa		31.5	■■■□□ 2.63
CDKN3-208	ENST00000555837	CAMTA1	Q9Y6Y1	1673 aa		31.5	■■■□□ 2.63
CDKN3-208	ENST00000555837	SPATA31A1	Q5TZJ5	1347 aa		31.49	■■■□□ 2.63
CDKN3-208	ENST00000555837	NFAT5	O94916	1531 aa		31.49	■■■□□ 2.63
CDKN3-208	ENST00000555837	FYB1	O15117	783 aa		31.49	■■■□□ 2.63
CDKN3-208	ENST00000555837	ZRANB1	Q9UGI0	708 aa		31.49	■■■□□ 2.63
CDKN3-208	ENST00000555837	NSD3	Q9BZ95	1437 aa		31.48	■■■□□ 2.63
CDKN3-208	ENST00000555837	COL5A2	P05997	1499 aa	Predicted RBP	31.47	■■■□□ 2.63

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