RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 ATP2B2Q01814 1243 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 PANK1Q8TE04 598 aa9.97□□□□□ -0.81
SYNE2-220ENST00000555612 ARID3AQ99856 593 aa9.96□□□□□ -0.81
SYNE2-220ENST00000555612 GNL3LQ9NVN8 582 aaKnown RBP9.96□□□□□ -0.81
SYNE2-220ENST00000555612 TPM1P09493 284 aa9.96□□□□□ -0.82
SYNE2-220ENST00000555612 CLASRPQ8N2M8 674 aaKnown RBP9.96□□□□□ -0.82
SYNE2-220ENST00000555612 ADAMTS8Q9UP79 889 aa9.96□□□□□ -0.82
SYNE2-220ENST00000555612 ERBINQ96RT1 1412 aa9.96□□□□□ -0.82
SYNE2-220ENST00000555612 RRS1Q15050 365 aaKnown RBP9.96□□□□□ -0.82
SYNE2-220ENST00000555612 DNAJC5BQ9UF47 199 aa9.96□□□□□ -0.82
SYNE2-220ENST00000555612 TTC39AQ5SRH9 613 aa9.96□□□□□ -0.82
SYNE2-220ENST00000555612 GNAI3P08754 354 aa9.95□□□□□ -0.82
SYNE2-220ENST00000555612 RRP12Q5JTH9 1297 aaKnown RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 CNTLNQ9NXG0 1405 aa9.95□□□□□ -0.82
SYNE2-220ENST00000555612 CEBPAP49715 358 aaPredicted RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 TWISTNBQ3B726 338 aaPredicted RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 INTS3Q68E01 1043 aaKnown RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 BICD2Q8TD16 824 aa9.95□□□□□ -0.82
SYNE2-220ENST00000555612 R3HCC1Q9Y3T6 440 aaKnown RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 WDR97A6NE52 1622 aa9.95□□□□□ -0.82
SYNE2-220ENST00000555612 DDX49Q9Y6V7 483 aaKnown RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 TROQ12816 1431 aaPredicted RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 IPO9Q96P70 1041 aaKnown RBP9.95□□□□□ -0.82
SYNE2-220ENST00000555612 STK11IPQ8N1F8 1099 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 PPP2R1AP30153 589 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 EXOSC9Q06265 439 aaKnown RBP9.94□□□□□ -0.82
SYNE2-220ENST00000555612 TMEM132AQ24JP5 1023 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 MPHOSPH8Q99549 860 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 CD109Q6YHK3 1445 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 SIL1Q9H173 461 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 SMC3Q9UQE7 1217 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 SLC4A2P04920 1241 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 DEKP35659 375 aaKnown RBP9.94□□□□□ -0.82
SYNE2-220ENST00000555612 CCDC158Q5M9N0 1113 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 NGLY1Q96IV0 654 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 BRMS1Q9HCU9 246 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 HFM1A2PYH4 1435 aa9.94□□□□□ -0.82
SYNE2-220ENST00000555612 SLC3A2P08195 630 aaKnown RBP9.93□□□□□ -0.82
SYNE2-220ENST00000555612 SART3Q15020 963 aaKnown RBP9.93□□□□□ -0.82
SYNE2-220ENST00000555612 PDE4AP27815 886 aa9.93□□□□□ -0.82
SYNE2-220ENST00000555612 ANKRD20A12PQ8NF67 263 aa9.93□□□□□ -0.82
SYNE2-220ENST00000555612 NINLQ9Y2I6 1382 aa9.93□□□□□ -0.82
SYNE2-220ENST00000555612 PNISRQ8TF01 805 aaKnown RBP9.93□□□□□ -0.82
SYNE2-220ENST00000555612 CNTROBQ8N137 903 aa9.93□□□□□ -0.82
SYNE2-220ENST00000555612 DDX11L8A8MPP1 907 aa9.93□□□□□ -0.82
SYNE2-220ENST00000555612 TSR2Q969E8 191 aaKnown RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 NUDT16Q96DE0 195 aaKnown RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 C1orf115Q9H7X2 142 aa9.92□□□□□ -0.82
SYNE2-220ENST00000555612 HOOK1Q9UJC3 728 aaKnown RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 XBP1P17861 261 aa9.92□□□□□ -0.82
SYNE2-220ENST00000555612 CCAR2Q8N163 923 aaKnown RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 BTBD11A6QL63 1104 aa9.92□□□□□ -0.82
SYNE2-220ENST00000555612 ZSCAN29Q8IWY8 852 aaPredicted RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 CCDC85AQ96PX6 553 aaPredicted RBP9.92□□□□□ -0.82
SYNE2-220ENST00000555612 WAPLQ7Z5K2 1190 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 RPGRIP1LQ68CZ1 1315 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 ATP2B1P20020 1258 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 GOLGA6L1Q8N7Z2 621 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 FBXO3Q9UK99 471 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 TIAM1Q13009 1591 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 CCDC57Q2TAC2 916 aa9.91□□□□□ -0.82
SYNE2-220ENST00000555612 IPO7O95373 1038 aaKnown RBP9.91□□□□□ -0.82
SYNE2-220ENST00000555612 PTCD1O75127 700 aaKnown RBP9.9□□□□□ -0.82
SYNE2-220ENST00000555612 SRCIN1Q9C0H9 1055 aa9.9□□□□□ -0.82
SYNE2-220ENST00000555612 GNAI2P04899 355 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 KCNH5Q8NCM2 988 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 EHBP1L1Q8N3D4 1523 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 FOXO3O43524 673 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 ERC1Q8IUD2 1116 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 TMOD3Q9NYL9 352 aa9.9□□□□□ -0.83
SYNE2-220ENST00000555612 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.89□□□□□ -0.83
SYNE2-220ENST00000555612 SPINK5Q9NQ38 1064 aaPredicted RBP9.89□□□□□ -0.83
SYNE2-220ENST00000555612 KIAA1107Q9UPP5 1409 aa9.89□□□□□ -0.83
SYNE2-220ENST00000555612 CDC45O75419 566 aa9.89□□□□□ -0.83
SYNE2-220ENST00000555612 ZPR1O75312 459 aa9.89□□□□□ -0.83
SYNE2-220ENST00000555612 STARD3NLO95772 234 aa9.89□□□□□ -0.83
SYNE2-220ENST00000555612 PSMA5P28066 241 aa9.89□□□□□ -0.83
SYNE2-220ENST00000555612 FBXO31Q5XUX0 539 aaPredicted RBP9.89□□□□□ -0.83
SYNE2-220ENST00000555612 PPP6R1Q9UPN7 881 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 HECW1Q76N89 1606 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 CT47A1Q5JQC4 288 aaPredicted RBP9.88□□□□□ -0.83
SYNE2-220ENST00000555612 CCDC73Q6ZRK6 1079 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 DMRT2Q9Y5R5 561 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 CCDC61Q9Y6R9 512 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 ATAD2Q6PL18 1390 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 USHBP1Q8N6Y0 703 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 WWC2Q6AWC2 1192 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 NOB1Q9ULX3 412 aaKnown RBP9.88□□□□□ -0.83
SYNE2-220ENST00000555612 AMOTL2Q9Y2J4 779 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 ANKRD30BQ9BXX2 1392 aa9.88□□□□□ -0.83
SYNE2-220ENST00000555612 ZNF219Q9P2Y4 722 aaPredicted RBP9.87□□□□□ -0.83
SYNE2-220ENST00000555612 RAI14Q9P0K7 980 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 IGHMBP2P38935 993 aaKnown RBP9.87□□□□□ -0.83
SYNE2-220ENST00000555612 FKBP4Q02790 459 aaKnown RBP eCLIP9.87□□□□□ -0.83
SYNE2-220ENST00000555612 MPRIPQ6WCQ1 1025 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 PAXIP1Q6ZW49 1069 aaPredicted RBP9.87□□□□□ -0.83
SYNE2-220ENST00000555612 NACAP1Q9BZK3 213 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 PHF8Q9UPP1 1060 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 CDCA7LQ96GN5 454 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 ARHGEF11O15085 1522 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms