RNA–Protein interactions for RNA: ENST00000554997.1

SYNE2-215, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 711 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-215	ENST00000554997	ITSN1	Q15811	1721 aa		13.98	□□□□□ -0.17
SYNE2-215	ENST00000554997	KIF1A	Q12756	1690 aa		13.98	□□□□□ -0.17
SYNE2-215	ENST00000554997	FYB1	O15117	783 aa		13.98	□□□□□ -0.17
SYNE2-215	ENST00000554997	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.98	□□□□□ -0.17
SYNE2-215	ENST00000554997	EDC4	Q6P2E9	1401 aa	Known RBP	13.98	□□□□□ -0.17
SYNE2-215	ENST00000554997	SPATA31A3	Q5VYP0	1347 aa		13.97	□□□□□ -0.17
SYNE2-215	ENST00000554997	ABTB2	Q8N961	1025 aa		13.97	□□□□□ -0.17
SYNE2-215	ENST00000554997	ROBO1	Q9Y6N7	1651 aa		13.97	□□□□□ -0.17
SYNE2-215	ENST00000554997	CGNL1	Q0VF96	1302 aa		13.96	□□□□□ -0.17
SYNE2-215	ENST00000554997	PXDN	Q92626	1479 aa		13.96	□□□□□ -0.17
SYNE2-215	ENST00000554997	AMER1	Q5JTC6	1135 aa	Predicted RBP	13.96	□□□□□ -0.17
SYNE2-215	ENST00000554997	NSD3	Q9BZ95	1437 aa		13.96	□□□□□ -0.18
SYNE2-215	ENST00000554997	MYOM1	P52179	1685 aa		13.95	□□□□□ -0.18
SYNE2-215	ENST00000554997	HSPA1L	P34931	641 aa		13.94	□□□□□ -0.18
SYNE2-215	ENST00000554997	NLRP6	P59044	892 aa		13.94	□□□□□ -0.18
SYNE2-215	ENST00000554997	LMOD2	Q6P5Q4	547 aa		13.94	□□□□□ -0.18
SYNE2-215	ENST00000554997	NLRP13	Q86W25	1043 aa		13.94	□□□□□ -0.18
SYNE2-215	ENST00000554997	NME9	Q86XW9	330 aa		13.94	□□□□□ -0.18
SYNE2-215	ENST00000554997	AHDC1	Q5TGY3	1603 aa	Predicted RBP	13.93	□□□□□ -0.18
SYNE2-215	ENST00000554997	USP31	Q70CQ4	1352 aa		13.93	□□□□□ -0.18
SYNE2-215	ENST00000554997	NPC1L1	Q9UHC9	1359 aa		13.93	□□□□□ -0.18
SYNE2-215	ENST00000554997	GGNBP2	Q9H3C7	697 aa		13.92	□□□□□ -0.18
SYNE2-215	ENST00000554997	ZRANB1	Q9UGI0	708 aa		13.92	□□□□□ -0.18
SYNE2-215	ENST00000554997	ARHGEF10	O15013	1369 aa		13.92	□□□□□ -0.18
SYNE2-215	ENST00000554997	NHSL1	Q5SYE7	1610 aa		13.91	□□□□□ -0.18
SYNE2-215	ENST00000554997	MSH5	O43196	834 aa		13.91	□□□□□ -0.18
SYNE2-215	ENST00000554997	NUTM2G	Q5VZR2	741 aa		13.91	□□□□□ -0.18
SYNE2-215	ENST00000554997	COG3	Q96JB2	828 aa		13.91	□□□□□ -0.18
SYNE2-215	ENST00000554997	AKAP12	Q02952	1782 aa		13.91	□□□□□ -0.18
SYNE2-215	ENST00000554997	TNS3	Q68CZ2	1445 aa		13.9	□□□□□ -0.18
SYNE2-215	ENST00000554997	CC2D1B	Q5T0F9	858 aa	Known RBP	13.9	□□□□□ -0.18
SYNE2-215	ENST00000554997	NSD2	O96028	1365 aa		13.9	□□□□□ -0.18
SYNE2-215	ENST00000554997	MORC1	Q86VD1	984 aa		13.89	□□□□□ -0.19
SYNE2-215	ENST00000554997	MON2	Q7Z3U7	1717 aa		13.89	□□□□□ -0.19
SYNE2-215	ENST00000554997	GC	P02774	474 aa		13.88	□□□□□ -0.19
SYNE2-215	ENST00000554997	KCNH5	Q8NCM2	988 aa		13.88	□□□□□ -0.19
SYNE2-215	ENST00000554997	TRPM3	Q9HCF6	1732 aa	Predicted RBP	13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	JCAD	Q9P266	1359 aa		13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	RALBP1	Q15311	655 aa		13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	DIEXF	Q68CQ4	756 aa	Known RBP	13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	CABLES1	Q8TDN4	633 aa		13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	USP19	O94966	1318 aa		13.87	□□□□□ -0.19
SYNE2-215	ENST00000554997	PNPLA6	Q8IY17	1366 aa		13.86	□□□□□ -0.19
SYNE2-215	ENST00000554997	NRK	Q7Z2Y5	1582 aa		13.86	□□□□□ -0.19
SYNE2-215	ENST00000554997	PHLPP1	O60346	1717 aa		13.86	□□□□□ -0.19
SYNE2-215	ENST00000554997	COL16A1	Q07092	1604 aa	Predicted RBP	13.86	□□□□□ -0.19
SYNE2-215	ENST00000554997	CNGB1	Q14028	1251 aa	Predicted RBP	13.85	□□□□□ -0.19
SYNE2-215	ENST00000554997	OVOS2	A0A0J9YW53	1432 aa		13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	OVOS2	Q6IE36	1432 aa		13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	ANP32C	O43423	234 aa		13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	PLEKHG5	O94827	1062 aa		13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	SPATA31A6	Q5VVP1	1343 aa		13.84	□□□□□ -0.19
SYNE2-215	ENST00000554997	ALS2	Q96Q42	1657 aa		13.83	□□□□□ -0.2
SYNE2-215	ENST00000554997	FBLN1	P23142	703 aa		13.83	□□□□□ -0.2
SYNE2-215	ENST00000554997	TNNT2	P45379	298 aa	Predicted RBP	13.83	□□□□□ -0.2
SYNE2-215	ENST00000554997	HAP1	P54257	671 aa	Predicted RBP	13.83	□□□□□ -0.2
SYNE2-215	ENST00000554997	AATK	Q6ZMQ8	1374 aa		13.83	□□□□□ -0.2
SYNE2-215	ENST00000554997	ARHGEF25	Q86VW2	580 aa		13.82	□□□□□ -0.2
SYNE2-215	ENST00000554997	MED1	Q15648	1581 aa	Predicted RBP	13.82	□□□□□ -0.2
SYNE2-215	ENST00000554997	PARD3	Q8TEW0	1356 aa		13.82	□□□□□ -0.2
SYNE2-215	ENST00000554997	PIK3C2A	O00443	1686 aa		13.82	□□□□□ -0.2
SYNE2-215	ENST00000554997	SOX12	O15370	315 aa		13.81	□□□□□ -0.2
SYNE2-215	ENST00000554997	ZC3H6	P61129	1189 aa	Known RBP	13.81	□□□□□ -0.2
SYNE2-215	ENST00000554997	POLK	Q9UBT6	870 aa		13.81	□□□□□ -0.2
SYNE2-215	ENST00000554997	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE2-215	ENST00000554997	NUTM2E	B1AL46	878 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE2-215	ENST00000554997	PPP2R1A	P30153	589 aa		13.8	□□□□□ -0.2
SYNE2-215	ENST00000554997	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.8	□□□□□ -0.2
SYNE2-215	ENST00000554997	SLIT3	O75094	1523 aa		13.8	□□□□□ -0.2
SYNE2-215	ENST00000554997	FAM83G	A6ND36	823 aa		13.79	□□□□□ -0.2
SYNE2-215	ENST00000554997	RRS1	Q15050	365 aa	Known RBP	13.79	□□□□□ -0.2
SYNE2-215	ENST00000554997	CPD	O75976	1380 aa		13.79	□□□□□ -0.2
SYNE2-215	ENST00000554997	COL22A1	Q8NFW1	1626 aa	Predicted RBP	13.79	□□□□□ -0.2
SYNE2-215	ENST00000554997	MTHFS	P49914	203 aa		13.78	□□□□□ -0.2
SYNE2-215	ENST00000554997	IP6K1	Q92551	441 aa		13.78	□□□□□ -0.2
SYNE2-215	ENST00000554997	MAP3K19	Q56UN5	1328 aa		13.78	□□□□□ -0.2
SYNE2-215	ENST00000554997	ADAMTS2	O95450	1211 aa		13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	AMPH	P49418	695 aa		13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	USP54	Q70EL1	1684 aa		13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	PRDM11	Q9NQV5	511 aa		13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	EMILIN1	Q9Y6C2	1016 aa		13.77	□□□□□ -0.21
SYNE2-215	ENST00000554997	KIF20B	Q96Q89	1820 aa		13.76	□□□□□ -0.21
SYNE2-215	ENST00000554997	KIF24	Q5T7B8	1368 aa		13.76	□□□□□ -0.21
SYNE2-215	ENST00000554997	KIAA0232	Q92628	1395 aa		13.76	□□□□□ -0.21
SYNE2-215	ENST00000554997	PPM1G	O15355	546 aa	Predicted RBP	13.76	□□□□□ -0.21
SYNE2-215	ENST00000554997	SHPRH	Q149N8	1683 aa		13.75	□□□□□ -0.21
SYNE2-215	ENST00000554997	HOXC9	P31274	260 aa		13.75	□□□□□ -0.21
SYNE2-215	ENST00000554997	CHRNA2	Q15822	529 aa		13.75	□□□□□ -0.21
SYNE2-215	ENST00000554997	AXIN2	Q9Y2T1	843 aa		13.75	□□□□□ -0.21
SYNE2-215	ENST00000554997	NFAT5	O94916	1531 aa		13.74	□□□□□ -0.21
SYNE2-215	ENST00000554997	ZBTB7C	A1YPR0	619 aa		13.74	□□□□□ -0.21
SYNE2-215	ENST00000554997	MARF1	Q9Y4F3	1742 aa	Known RBP	13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	INSR	P06213	1382 aa		13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	HSP90AB2P	Q58FF8	381 aa		13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	MIER1	Q8N108	512 aa		13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	NGLY1	Q96IV0	654 aa		13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	CFAP53	Q96M91	514 aa		13.73	□□□□□ -0.21
SYNE2-215	ENST00000554997	ANKRD26	Q9UPS8	1709 aa		13.73	□□□□□ -0.21

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