RNA–Protein interactions for RNA: ENST00000554873.5

SYNE3-203, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 5 BASIC

Gene SYNE3, Length 2,826 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-203ENST00000554873 DDIT3P35638 169 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 WDR63Q8IWG1 891 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NOS1P29475 1434 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 IFT172Q9UG01 1749 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 CHGAP10645 457 aaKnown RBP19.53■□□□□ 0.72
SYNE3-203ENST00000554873 HSCBQ8IWL3 235 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 PMFBP1Q8TBY8 1022 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 ARID3AQ99856 593 aa19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NOL7Q9UMY1 257 aaKnown RBP19.53■□□□□ 0.72
SYNE3-203ENST00000554873 NCOA3Q9Y6Q9 1424 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 MTHFSP49914 203 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 BCL2L13Q9BXK5 485 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 MROH2AA6NES4 1674 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 CSPP1Q1MSJ5 1256 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 C22orf23Q9BZE7 217 aa19.52■□□□□ 0.72
SYNE3-203ENST00000554873 TNPO1Q92973 898 aaKnown RBP19.52■□□□□ 0.71
SYNE3-203ENST00000554873 NAP1L2Q9ULW6 460 aaPredicted RBP19.52■□□□□ 0.71
SYNE3-203ENST00000554873 KIF20AO95235 890 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 EFCAB6Q5THR3 1501 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 ADGRL1O94910 1474 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 PPP4R3BQ5MIZ7 849 aa19.51■□□□□ 0.71
SYNE3-203ENST00000554873 GTPBP4Q9BZE4 634 aaKnown RBP19.51■□□□□ 0.71
SYNE3-203ENST00000554873 CIZ1Q9ULV3 898 aaPredicted RBP19.51■□□□□ 0.71
SYNE3-203ENST00000554873 ABCA9Q8IUA7 1624 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 IQSEC2Q5JU85 1478 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 C14orf93Q9H972 538 aaKnown RBP19.5■□□□□ 0.71
SYNE3-203ENST00000554873 TMEM132EQ6IEE7 984 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 PDZRN3Q9UPQ7 1066 aa19.5■□□□□ 0.71
SYNE3-203ENST00000554873 IBTKQ9P2D0 1353 aaPredicted RBP19.49■□□□□ 0.71
SYNE3-203ENST00000554873 CCDC27Q2M243 656 aa19.48■□□□□ 0.71
SYNE3-203ENST00000554873 SASS6Q6UVJ0 657 aa19.48■□□□□ 0.71
SYNE3-203ENST00000554873 PPRC1Q5VV67 1664 aaKnown RBP19.48■□□□□ 0.71
SYNE3-203ENST00000554873 XPCQ01831 940 aaPredicted RBP19.47■□□□□ 0.71
SYNE3-203ENST00000554873 SETBP1Q9Y6X0 1596 aa19.47■□□□□ 0.71
SYNE3-203ENST00000554873 RAB3GAP1Q15042 981 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 ZNF518AQ6AHZ1 1483 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 CFAP53Q96M91 514 aa19.46■□□□□ 0.71
SYNE3-203ENST00000554873 RWDD1Q9H446 243 aaPredicted RBP19.46■□□□□ 0.71
SYNE3-203ENST00000554873 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.45■□□□□ 0.7
SYNE3-203ENST00000554873 ADGRB3O60242 1522 aa19.45■□□□□ 0.7
SYNE3-203ENST00000554873 LETM1O95202 739 aaPredicted RBP19.45■□□□□ 0.7
SYNE3-203ENST00000554873 SMC5Q8IY18 1101 aa19.45■□□□□ 0.7
SYNE3-203ENST00000554873 MCM5P33992 734 aa19.44■□□□□ 0.7
SYNE3-203ENST00000554873 CFAP65Q6ZU64 1925 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 IPO4Q8TEX9 1081 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 QRICH2Q9H0J4 1663 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 ADGRB1O14514 1584 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 LMTK2Q8IWU2 1503 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 U2AF1L5P0DN76 240 aaPredicted RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 MFAP1P55081 439 aaKnown RBP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 U2AF1Q01081 240 aaKnown RBP eCLIP19.43■□□□□ 0.7
SYNE3-203ENST00000554873 ZKSCAN5Q9Y2L8 839 aa19.43■□□□□ 0.7
SYNE3-203ENST00000554873 MVPQ14764 893 aaKnown RBP19.42■□□□□ 0.7
SYNE3-203ENST00000554873 ZC3H13Q5T200 1668 aaKnown RBP19.42■□□□□ 0.7
SYNE3-203ENST00000554873 SNX21Q969T3 373 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 PDLIM2Q96JY6 352 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 KIDINS220Q9ULH0 1771 aa19.42■□□□□ 0.7
SYNE3-203ENST00000554873 CHMP4BQ9H444 224 aaKnown RBP19.41■□□□□ 0.7
SYNE3-203ENST00000554873 NCBP3Q53F19 620 aaKnown RBP19.4■□□□□ 0.7
SYNE3-203ENST00000554873 KLHL40Q2TBA0 621 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 TAF7LQ5H9L4 462 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 ZKSCAN2Q63HK3 967 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 TMEM51Q9NW97 253 aa19.4■□□□□ 0.7
SYNE3-203ENST00000554873 NPATQ14207 1427 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 GOLGA6L22H0YM25 854 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 PPLO60437 1756 aa19.39■□□□□ 0.69
SYNE3-203ENST00000554873 ZNF445P59923 1031 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 USP32Q8NFA0 1604 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 GGT6Q6P531 493 aa19.38■□□□□ 0.69
SYNE3-203ENST00000554873 DZIP1LQ8IYY4 767 aaKnown RBP19.38■□□□□ 0.69
SYNE3-203ENST00000554873 TSR2Q969E8 191 aaKnown RBP19.38■□□□□ 0.69
SYNE3-203ENST00000554873 RPGRIP1LQ68CZ1 1315 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 EVC2Q86UK5 1308 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 NUTM2DQ5VT03 806 aaPredicted RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 TAF3Q5VWG9 929 aa19.37■□□□□ 0.69
SYNE3-203ENST00000554873 FTSJ3Q8IY81 847 aaKnown RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 PUS7Q96PZ0 661 aaKnown RBP19.37■□□□□ 0.69
SYNE3-203ENST00000554873 ANKRD36BQ8N2N9 1353 aa19.36■□□□□ 0.69
SYNE3-203ENST00000554873 CABP2Q9NPB3 220 aa19.36■□□□□ 0.69
SYNE3-203ENST00000554873 DDX49Q9Y6V7 483 aaKnown RBP19.36■□□□□ 0.69
SYNE3-203ENST00000554873 HSP90AB1P08238 724 aaKnown RBP19.35■□□□□ 0.69
SYNE3-203ENST00000554873 EXOSC9Q06265 439 aaKnown RBP19.34■□□□□ 0.69
SYNE3-203ENST00000554873 CLEC17AQ6ZS10 378 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 MYRIPQ8NFW9 859 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 NSD2O96028 1365 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 ASXL2Q76L83 1435 aa19.34■□□□□ 0.69
SYNE3-203ENST00000554873 CT47B1P0C2W7 299 aaPredicted RBP19.33■□□□□ 0.69
SYNE3-203ENST00000554873 SMC4Q9NTJ3 1288 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 CBX1P83916 185 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 PLEKHF1Q96S99 279 aa19.33■□□□□ 0.69
SYNE3-203ENST00000554873 TRIM27P14373 513 aa19.33■□□□□ 0.68
SYNE3-203ENST00000554873 RBM25P49756 843 aaKnown RBP19.33■□□□□ 0.68
SYNE3-203ENST00000554873 CCDC39Q9UFE4 941 aa19.33■□□□□ 0.68
SYNE3-203ENST00000554873 SSH1Q8WYL5 1049 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TRIM35Q9UPQ4 493 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TULP4Q9NRJ4 1543 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 TMPOP42166 694 aaKnown RBP19.32■□□□□ 0.68
SYNE3-203ENST00000554873 ADGRB2O60241 1585 aa19.32■□□□□ 0.68
SYNE3-203ENST00000554873 U2SURPO15042 1029 aaKnown RBP19.31■□□□□ 0.68
SYNE3-203ENST00000554873 SAFB2Q14151 953 aaKnown RBP eCLIP19.31■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms