RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 HSP90AB1P08238 724 aaKnown RBP11.95□□□□□ -0.5
SYNE2-213ENST00000554805 HMOX1P09601 288 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 MCM4P33991 863 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 ANKRD45Q5TZF3 282 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 ANTXR1Q9H6X2 564 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 A0A1W2PP64 1363 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 PRKAR2BP31323 418 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 CABP1Q9NZU7 370 aa11.95□□□□□ -0.5
SYNE2-213ENST00000554805 KIF16BQ96L93 1317 aa11.94□□□□□ -0.5
SYNE2-213ENST00000554805 HDAC1Q13547 482 aaPredicted RBP11.94□□□□□ -0.5
SYNE2-213ENST00000554805 C1orf115Q9H7X2 142 aa11.94□□□□□ -0.5
SYNE2-213ENST00000554805 FOXD4L1Q9NU39 408 aa11.94□□□□□ -0.5
SYNE2-213ENST00000554805 THUMPD2Q9BTF0 503 aaKnown RBP11.94□□□□□ -0.5
SYNE2-213ENST00000554805 PPRC1Q5VV67 1664 aaKnown RBP11.94□□□□□ -0.5
SYNE2-213ENST00000554805 FBXO31Q5XUX0 539 aaPredicted RBP11.94□□□□□ -0.5
SYNE2-213ENST00000554805 PUS7Q96PZ0 661 aaKnown RBP11.94□□□□□ -0.5
SYNE2-213ENST00000554805 IQSEC2Q5JU85 1478 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 NRXN1Q9ULB1 1477 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 PLEKHF1Q96S99 279 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 CDK19Q9BWU1 502 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 MROH2AA6NES4 1674 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 MROH1Q8NDA8 1641 aa11.93□□□□□ -0.5
SYNE2-213ENST00000554805 FAM43AQ8N2R8 423 aa11.92□□□□□ -0.5
SYNE2-213ENST00000554805 ADGRB3O60242 1522 aa11.92□□□□□ -0.5
SYNE2-213ENST00000554805 TRAK2O60296 914 aa11.92□□□□□ -0.5
SYNE2-213ENST00000554805 SMC5Q8IY18 1101 aa11.91□□□□□ -0.5
SYNE2-213ENST00000554805 ZBTB40Q9NUA8 1239 aa11.91□□□□□ -0.5
SYNE2-213ENST00000554805 CHD1LQ86WJ1 897 aa11.91□□□□□ -0.5
SYNE2-213ENST00000554805 ABCA9Q8IUA7 1624 aa11.91□□□□□ -0.5
SYNE2-213ENST00000554805 ATAD2Q6PL18 1390 aa11.91□□□□□ -0.5
SYNE2-213ENST00000554805 QRICH2Q9H0J4 1663 aa11.9□□□□□ -0.5
SYNE2-213ENST00000554805 SLC52A1Q9NWF4 448 aa11.9□□□□□ -0.5
SYNE2-213ENST00000554805 ABCC11Q96J66 1382 aa11.9□□□□□ -0.5
SYNE2-213ENST00000554805 NCBP3Q53F19 620 aaKnown RBP11.9□□□□□ -0.5
SYNE2-213ENST00000554805 SETBP1Q9Y6X0 1596 aa11.9□□□□□ -0.5
SYNE2-213ENST00000554805 IL16Q14005 1332 aa11.9□□□□□ -0.5
SYNE2-213ENST00000554805 NLRP1Q9C000 1473 aa11.9□□□□□ -0.51
SYNE2-213ENST00000554805 FCHSD2O94868 740 aa11.89□□□□□ -0.51
SYNE2-213ENST00000554805 ADGRB1O14514 1584 aa11.89□□□□□ -0.51
SYNE2-213ENST00000554805 NUCB1Q02818 461 aa11.89□□□□□ -0.51
SYNE2-213ENST00000554805 SHPRHQ149N8 1683 aa11.89□□□□□ -0.51
SYNE2-213ENST00000554805 TSPOAP1O95153 1857 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 KIDINS220Q9ULH0 1771 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 ZMYM3Q14202 1370 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 WAPLQ7Z5K2 1190 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 CHMP4BQ9H444 224 aaKnown RBP11.88□□□□□ -0.51
SYNE2-213ENST00000554805 LMTK2Q8IWU2 1503 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 POGZQ7Z3K3 1410 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 XRCC6P12956 609 aaKnown RBP eCLIP11.88□□□□□ -0.51
SYNE2-213ENST00000554805 ALDH1L2Q3SY69 923 aa11.88□□□□□ -0.51
SYNE2-213ENST00000554805 TULP4Q9NRJ4 1543 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 DDX11L8A8MPP1 907 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 CALD1Q05682 793 aaKnown RBP11.87□□□□□ -0.51
SYNE2-213ENST00000554805 PHACTR3Q96KR7 559 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 PANK2Q9BZ23 570 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 MYO3AQ8NEV4 1616 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 APBB1O00213 710 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 TSPYL6Q8N831 410 aa11.87□□□□□ -0.51
SYNE2-213ENST00000554805 CEBPAP49715 358 aaPredicted RBP11.86□□□□□ -0.51
SYNE2-213ENST00000554805 NFE2L2Q16236 605 aa11.86□□□□□ -0.51
SYNE2-213ENST00000554805 EMILIN1Q9Y6C2 1016 aa11.86□□□□□ -0.51
SYNE2-213ENST00000554805 GNAI1P63096 354 aa11.86□□□□□ -0.51
SYNE2-213ENST00000554805 YEATS2Q9ULM3 1422 aa11.86□□□□□ -0.51
SYNE2-213ENST00000554805 PLEKHG5O94827 1062 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 GBP4Q96PP9 640 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 POLKQ9UBT6 870 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 GLI2P10070 1586 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 RSPH6AQ9H0K4 717 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 RRAGDQ9NQL2 400 aaPredicted RBP11.85□□□□□ -0.51
SYNE2-213ENST00000554805 ABCC3O15438 1527 aa11.85□□□□□ -0.51
SYNE2-213ENST00000554805 TWISTNBQ3B726 338 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-213ENST00000554805 GCC1Q96CN9 775 aa11.84□□□□□ -0.51
SYNE2-213ENST00000554805 NAP1L5Q96NT1 182 aaPredicted RBP11.84□□□□□ -0.51
SYNE2-213ENST00000554805 VAMP4O75379 141 aa11.84□□□□□ -0.51
SYNE2-213ENST00000554805 NUTM2FA1L443 756 aa11.84□□□□□ -0.51
SYNE2-213ENST00000554805 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
SYNE2-213ENST00000554805 MLH3Q9UHC1 1453 aa11.84□□□□□ -0.51
SYNE2-213ENST00000554805 DCTN1Q14203 1278 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 BMP2KLQ5H9B9 411 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 NME9Q86XW9 330 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 ZRANB1Q9UGI0 708 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 IFT172Q9UG01 1749 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 ZBTB7BO15156 539 aaPredicted RBP11.83□□□□□ -0.52
SYNE2-213ENST00000554805 TNPO1Q92973 898 aaKnown RBP11.83□□□□□ -0.52
SYNE2-213ENST00000554805 RBM42Q9BTD8 480 aaKnown RBP11.83□□□□□ -0.52
SYNE2-213ENST00000554805 MRE11P49959 708 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 RRS1Q15050 365 aaKnown RBP11.83□□□□□ -0.52
SYNE2-213ENST00000554805 TBC1D9Q6ZT07 1266 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 MBIPQ9NS73 344 aa11.83□□□□□ -0.52
SYNE2-213ENST00000554805 YTHDC2Q9H6S0 1430 aaKnown RBP11.82□□□□□ -0.52
SYNE2-213ENST00000554805 SOX12O15370 315 aa11.82□□□□□ -0.52
SYNE2-213ENST00000554805 PPLO60437 1756 aa11.82□□□□□ -0.52
SYNE2-213ENST00000554805 FAM83GA6ND36 823 aa11.82□□□□□ -0.52
SYNE2-213ENST00000554805 NCLP19338 710 aaKnown RBP11.82□□□□□ -0.52
SYNE2-213ENST00000554805 RBM25P49756 843 aaKnown RBP11.82□□□□□ -0.52
SYNE2-213ENST00000554805 ZNF428Q96B54 188 aa11.82□□□□□ -0.52
SYNE2-213ENST00000554805 TRIM44Q96DX7 344 aaPredicted RBP11.82□□□□□ -0.52
SYNE2-213ENST00000554805 API5Q9BZZ5 524 aaKnown RBP11.82□□□□□ -0.52
SYNE2-213ENST00000554805 USP32Q8NFA0 1604 aa11.81□□□□□ -0.52
SYNE2-213ENST00000554805 GOLGA6L22H0YM25 854 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms