RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 NRKQ7Z2Y5 1582 aa20.19■□□□□ 0.82
CCDC88C-207ENST00000554051 MON2Q7Z3U7 1717 aa20.19■□□□□ 0.82
CCDC88C-207ENST00000554051 ZNF692Q9BU19 519 aaPredicted RBP20.18■□□□□ 0.82
CCDC88C-207ENST00000554051 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.18■□□□□ 0.82
CCDC88C-207ENST00000554051 PHRF1Q9P1Y6 1649 aaKnown RBP20.17■□□□□ 0.82
CCDC88C-207ENST00000554051 PAK3O75914 559 aaPredicted RBP20.17■□□□□ 0.82
CCDC88C-207ENST00000554051 TMF1P82094 1093 aa20.17■□□□□ 0.82
CCDC88C-207ENST00000554051 C8orf37Q96NL8 207 aa20.17■□□□□ 0.82
CCDC88C-207ENST00000554051 CABP1Q9NZU7 370 aa20.17■□□□□ 0.82
CCDC88C-207ENST00000554051 ADAMTS2O95450 1211 aa20.16■□□□□ 0.82
CCDC88C-207ENST00000554051 AFF2P51816 1311 aa20.16■□□□□ 0.82
CCDC88C-207ENST00000554051 CPSF1Q10570 1443 aaKnown RBP20.16■□□□□ 0.82
CCDC88C-207ENST00000554051 NWD2Q9ULI1 1742 aa20.16■□□□□ 0.82
CCDC88C-207ENST00000554051 RGS17Q9UGC6 210 aaPredicted RBP20.15■□□□□ 0.82
CCDC88C-207ENST00000554051 NGLY1Q96IV0 654 aa20.14■□□□□ 0.81
CCDC88C-207ENST00000554051 COL14A1Q05707 1796 aaKnown RBP20.13■□□□□ 0.81
CCDC88C-207ENST00000554051 SSH2Q76I76 1423 aa20.13■□□□□ 0.81
CCDC88C-207ENST00000554051 TTC21AQ8NDW8 1320 aa20.13■□□□□ 0.81
CCDC88C-207ENST00000554051 PLCH1Q4KWH8 1693 aa20.13■□□□□ 0.81
CCDC88C-207ENST00000554051 CDK12Q9NYV4 1490 aaPredicted RBP20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 KTN1Q86UP2 1357 aaKnown RBP20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 HDGFL2Q7Z4V5 671 aaPredicted RBP20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 FNBP4Q8N3X1 1017 aaPredicted RBP20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 TERF2IPQ9NYB0 399 aa20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 SLIT2O94813 1529 aa20.12■□□□□ 0.81
CCDC88C-207ENST00000554051 PIK3C2AO00443 1686 aa20.11■□□□□ 0.81
CCDC88C-207ENST00000554051 USP54Q70EL1 1684 aa20.11■□□□□ 0.81
CCDC88C-207ENST00000554051 EIF4G2P78344 907 aaKnown RBP eCLIP20.11■□□□□ 0.81
CCDC88C-207ENST00000554051 USP19O94966 1318 aa20.1■□□□□ 0.81
CCDC88C-207ENST00000554051 ABTB2Q8N961 1025 aa20.1■□□□□ 0.81
CCDC88C-207ENST00000554051 EDC4Q6P2E9 1401 aaKnown RBP20.1■□□□□ 0.81
CCDC88C-207ENST00000554051 SLIT3O75094 1523 aa20.09■□□□□ 0.81
CCDC88C-207ENST00000554051 NLRP13Q86W25 1043 aa20.09■□□□□ 0.81
CCDC88C-207ENST00000554051 CD163L1Q9NR16 1453 aa20.09■□□□□ 0.81
CCDC88C-207ENST00000554051 TMC1Q8TDI8 760 aa20.08■□□□□ 0.81
CCDC88C-207ENST00000554051 USP21Q9UK80 565 aa20.08■□□□□ 0.81
CCDC88C-207ENST00000554051 TRPC5Q9UL62 973 aaPredicted RBP20.08■□□□□ 0.81
CCDC88C-207ENST00000554051 ANKRD36BQ8N2N9 1353 aa20.08■□□□□ 0.8
CCDC88C-207ENST00000554051 POTEAQ6S8J7 498 aa20.07■□□□□ 0.8
CCDC88C-207ENST00000554051 ATRNO75882 1429 aa20.07■□□□□ 0.8
CCDC88C-207ENST00000554051 BCL9LQ86UU0 1499 aa20.06■□□□□ 0.8
CCDC88C-207ENST00000554051 ILDR2Q71H61 639 aa20.06■□□□□ 0.8
CCDC88C-207ENST00000554051 CABLES1Q8TDN4 633 aa20.06■□□□□ 0.8
CCDC88C-207ENST00000554051 A0A1W2PP64 1363 aa20.06■□□□□ 0.8
CCDC88C-207ENST00000554051 CPDO75976 1380 aa20.06■□□□□ 0.8
CCDC88C-207ENST00000554051 TTC21BQ7Z4L5 1316 aa20.05■□□□□ 0.8
CCDC88C-207ENST00000554051 NRAPQ86VF7 1730 aa20.05■□□□□ 0.8
CCDC88C-207ENST00000554051 MYOM1P52179 1685 aa20.05■□□□□ 0.8
CCDC88C-207ENST00000554051 RXRBP28702 533 aa20.04■□□□□ 0.8
CCDC88C-207ENST00000554051 ABCC6O95255 1503 aa20.03■□□□□ 0.8
CCDC88C-207ENST00000554051 RBM6P78332 1123 aaKnown RBP20.03■□□□□ 0.8
CCDC88C-207ENST00000554051 UNC5CLQ8IV45 518 aa20.03■□□□□ 0.8
CCDC88C-207ENST00000554051 PRDM11Q9NQV5 511 aa20.03■□□□□ 0.8
CCDC88C-207ENST00000554051 SLC12A5Q9H2X9 1139 aa20.02■□□□□ 0.8
CCDC88C-207ENST00000554051 USP31Q70CQ4 1352 aa20.02■□□□□ 0.8
CCDC88C-207ENST00000554051 NLRP6P59044 892 aa20.01■□□□□ 0.79
CCDC88C-207ENST00000554051 KCNH5Q8NCM2 988 aa20.01■□□□□ 0.79
CCDC88C-207ENST00000554051 QTRT2Q9H974 415 aaKnown RBP20.01■□□□□ 0.79
CCDC88C-207ENST00000554051 KIAA0232Q92628 1395 aa20■□□□□ 0.79
CCDC88C-207ENST00000554051 HSPA5P11021 654 aaKnown RBP20■□□□□ 0.79
CCDC88C-207ENST00000554051 LMO7Q8WWI1 1683 aa20■□□□□ 0.79
CCDC88C-207ENST00000554051 SOCS7O14512 581 aa19.99■□□□□ 0.79
CCDC88C-207ENST00000554051 PLEKHG5O94827 1062 aa19.99■□□□□ 0.79
CCDC88C-207ENST00000554051 NUTM2GQ5VZR2 741 aa19.99■□□□□ 0.79
CCDC88C-207ENST00000554051 GCP02774 474 aa19.98■□□□□ 0.79
CCDC88C-207ENST00000554051 FAM83GA6ND36 823 aa19.97■□□□□ 0.79
CCDC88C-207ENST00000554051 VPS72Q15906 364 aa19.97■□□□□ 0.79
CCDC88C-207ENST00000554051 NFAT5O94916 1531 aa19.97■□□□□ 0.79
CCDC88C-207ENST00000554051 OVOS2A0A0J9YW53 1432 aa19.96■□□□□ 0.79
CCDC88C-207ENST00000554051 RGS12O14924 1447 aa19.96■□□□□ 0.79
CCDC88C-207ENST00000554051 OVOS2Q6IE36 1432 aa19.96■□□□□ 0.79
CCDC88C-207ENST00000554051 KIF20BQ96Q89 1820 aa19.95■□□□□ 0.78
CCDC88C-207ENST00000554051 GLI3P10071 1580 aa19.95■□□□□ 0.78
CCDC88C-207ENST00000554051 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.94■□□□□ 0.78
CCDC88C-207ENST00000554051 GJD4Q96KN9 370 aaPredicted RBP19.94■□□□□ 0.78
CCDC88C-207ENST00000554051 BTG4Q9NY30 223 aa19.94■□□□□ 0.78
CCDC88C-207ENST00000554051 AATKQ6ZMQ8 1374 aa19.94■□□□□ 0.78
CCDC88C-207ENST00000554051 ZC3H6P61129 1189 aaKnown RBP19.93■□□□□ 0.78
CCDC88C-207ENST00000554051 COL5A2P05997 1499 aaPredicted RBP19.91■□□□□ 0.78
CCDC88C-207ENST00000554051 NME9Q86XW9 330 aa19.9■□□□□ 0.78
CCDC88C-207ENST00000554051 NSD3Q9BZ95 1437 aa19.89■□□□□ 0.77
CCDC88C-207ENST00000554051 CCDC9Q9Y3X0 531 aaKnown RBP19.89■□□□□ 0.77
CCDC88C-207ENST00000554051 CAMTA1Q9Y6Y1 1673 aa19.89■□□□□ 0.77
CCDC88C-207ENST00000554051 LTN1O94822 1766 aa19.88■□□□□ 0.77
CCDC88C-207ENST00000554051 COL18A1P39060 1754 aa19.88■□□□□ 0.77
CCDC88C-207ENST00000554051 COG3Q96JB2 828 aa19.88■□□□□ 0.77
CCDC88C-207ENST00000554051 CHRNA2Q15822 529 aa19.87■□□□□ 0.77
CCDC88C-207ENST00000554051 ARHGEF25Q86VW2 580 aa19.87■□□□□ 0.77
CCDC88C-207ENST00000554051 SPATA31A5Q5VU36 1347 aa19.86■□□□□ 0.77
CCDC88C-207ENST00000554051 SPATA31A7Q8IWB4 1347 aa19.86■□□□□ 0.77
CCDC88C-207ENST00000554051 CRB1P82279 1406 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 ANKRD26Q9UPS8 1709 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 THSD7AQ9UPZ6 1657 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 CGNL1Q0VF96 1302 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 EVA1CP58658 441 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 POLR3GLQ9BT43 218 aa19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 BLMP54132 1417 aaPredicted RBP19.85■□□□□ 0.77
CCDC88C-207ENST00000554051 FAM208AQ9UK61 1670 aaKnown RBP19.84■□□□□ 0.77
CCDC88C-207ENST00000554051 RTL1A6NKG5 1358 aa19.84■□□□□ 0.77
CCDC88C-207ENST00000554051 NSD2O96028 1365 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms