RNA–Protein interactions for RNA: ENST00000553889.5

PRKCH-209, Transcript of protein kinase C eta, human

TSL 4

Gene PRKCH, Length 553 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKCH-209	ENST00000553889	ADAMTS13	Q76LX8	1427 aa		11.99	□□□□□ -0.49
PRKCH-209	ENST00000553889	SLIT1	O75093	1534 aa		11.99	□□□□□ -0.49
PRKCH-209	ENST00000553889	RARS	P54136	660 aa	Known RBP	11.98	□□□□□ -0.49
PRKCH-209	ENST00000553889	ZNF692	Q9BU19	519 aa	Predicted RBP	11.98	□□□□□ -0.49
PRKCH-209	ENST00000553889	GGNBP2	Q9H3C7	697 aa		11.97	□□□□□ -0.49
PRKCH-209	ENST00000553889	MON2	Q7Z3U7	1717 aa		11.97	□□□□□ -0.49
PRKCH-209	ENST00000553889	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	PPIP5K1	Q6PFW1	1433 aa		11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	PDE4A	P27815	886 aa		11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	SAFB2	Q14151	953 aa	Known RBP eCLIP	11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	CCDC61	Q9Y6R9	512 aa		11.96	□□□□□ -0.49
PRKCH-209	ENST00000553889	AKAP12	Q02952	1782 aa		11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	DIAPH1	O60610	1272 aa	Known RBP	11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	TMPO	P42166	694 aa	Known RBP	11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	TNNT2	P45379	298 aa	Predicted RBP	11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	WAPL	Q7Z5K2	1190 aa		11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	ZNF428	Q96B54	188 aa		11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	DIP2A	Q14689	1571 aa		11.95	□□□□□ -0.5
PRKCH-209	ENST00000553889	PLEKHG3	A1L390	1219 aa		11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	BCAR3	O75815	825 aa		11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	ANP32A	P39687	249 aa	Known RBP	11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	BRPF1	P55201	1214 aa	Predicted RBP	11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	IPO9	Q96P70	1041 aa	Known RBP	11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	POLK	Q9UBT6	870 aa		11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	TRIM35	Q9UPQ4	493 aa		11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	C3	P01024	1663 aa		11.94	□□□□□ -0.5
PRKCH-209	ENST00000553889	NUDT16	Q96DE0	195 aa	Known RBP	11.93	□□□□□ -0.5
PRKCH-209	ENST00000553889	TBX22	Q9Y458	520 aa		11.93	□□□□□ -0.5
PRKCH-209	ENST00000553889	TOPAZ1	Q8N9V7	1692 aa		11.93	□□□□□ -0.5
PRKCH-209	ENST00000553889	PTCH1	Q13635	1447 aa		11.93	□□□□□ -0.5
PRKCH-209	ENST00000553889	MLEC	Q14165	292 aa		11.92	□□□□□ -0.5
PRKCH-209	ENST00000553889	CLUAP1	Q96AJ1	413 aa		11.92	□□□□□ -0.5
PRKCH-209	ENST00000553889	PIK3R4	Q99570	1358 aa		11.91	□□□□□ -0.5
PRKCH-209	ENST00000553889	ROBO2	Q9HCK4	1378 aa		11.91	□□□□□ -0.5
PRKCH-209	ENST00000553889	MAPK8IP3	Q9UPT6	1336 aa		11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	CALD1	Q05682	793 aa	Known RBP	11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	SSH2	Q76I76	1423 aa		11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	NRK	Q7Z2Y5	1582 aa		11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	PMFBP1	Q8TBY8	1022 aa		11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	RSPH6A	Q9H0K4	717 aa		11.9	□□□□□ -0.5
PRKCH-209	ENST00000553889	ITSN1	Q15811	1721 aa		11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	MAP2	P11137	1827 aa	Known RBP	11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	ALDH1L2	Q3SY69	923 aa		11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	TXNDC2	Q86VQ3	553 aa		11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	NOP58	Q9Y2X3	529 aa	Known RBP	11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	RRP7A	Q9Y3A4	280 aa	Known RBP	11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	LRRC7	Q96NW7	1537 aa		11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	11.89	□□□□□ -0.51
PRKCH-209	ENST00000553889	PRR36	Q9H6K5	1346 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	OVOS2	A0A0J9YW53	1432 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	OVOS2	Q6IE36	1432 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	LTK	P29376	864 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	IL13	P35225	146 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	USP31	Q70CQ4	1352 aa		11.88	□□□□□ -0.51
PRKCH-209	ENST00000553889	NALCN	Q8IZF0	1738 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	U2SURP	O15042	1029 aa	Known RBP	11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	NFE2L2	Q16236	605 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	FAM161A	Q3B820	660 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	ZKSCAN2	Q63HK3	967 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	COG3	Q96JB2	828 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	EID1	Q9Y6B2	187 aa		11.87	□□□□□ -0.51
PRKCH-209	ENST00000553889	PTPRU	Q92729	1446 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	ZNF853	P0CG23	659 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	RIPK4	P57078	832 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	NEUROD2	Q15784	382 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	RIMS1	Q86UR5	1692 aa	Known RBP	11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	USP6	P35125	1406 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	TTC21A	Q8NDW8	1320 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	KIF16B	Q96L93	1317 aa		11.86	□□□□□ -0.51
PRKCH-209	ENST00000553889	NEFM	P07197	916 aa		11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	LMOD3	Q0VAK6	560 aa		11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	MVP	Q14764	893 aa	Known RBP	11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	ARHGAP45	Q92619	1136 aa		11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	XRN1	Q8IZH2	1706 aa	Known RBP	11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	ANKAR	Q7Z5J8	1434 aa		11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	TTC21B	Q7Z4L5	1316 aa		11.85	□□□□□ -0.51
PRKCH-209	ENST00000553889	IPO8	O15397	1037 aa	Known RBP	11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	EXOSC9	Q06265	439 aa	Known RBP	11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	ERICH6	Q7L0X2	663 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	NME9	Q86XW9	330 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	PANK1	Q8TE04	598 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	IFT57	Q9NWB7	429 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	FER1L4	A9Z1Z3	1794 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	USP54	Q70EL1	1684 aa		11.84	□□□□□ -0.51
PRKCH-209	ENST00000553889	KIF24	Q5T7B8	1368 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	IGHD	P01880	384 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	RLBP1	P12271	317 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	CANX	P27824	592 aa	Known RBP	11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	PRKAR2B	P31323	418 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	GNAI1	P63096	354 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	C8orf34	Q49A92	452 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	DZIP1L	Q8IYY4	767 aa	Known RBP	11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	DDRGK1	Q96HY6	314 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	COG6	Q9Y2V7	657 aa		11.83	□□□□□ -0.52
PRKCH-209	ENST00000553889	HDAC1	Q13547	482 aa	Predicted RBP	11.82	□□□□□ -0.52
PRKCH-209	ENST00000553889	ATF7IP	Q6VMQ6	1270 aa		11.82	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms