RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 ARXQ96QS3 562 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 GZF1Q9H116 711 aaPredicted RBP22.1■■□□□ 1.13
SYNE3-202ENST00000553340 CABP2Q9NPB3 220 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 ARHGEF28Q8N1W1 1705 aaKnown RBP22.1■■□□□ 1.13
SYNE3-202ENST00000553340 GGT6Q6P531 493 aa22.1■■□□□ 1.13
SYNE3-202ENST00000553340 VGFO15240 615 aaPredicted RBP22.09■■□□□ 1.13
SYNE3-202ENST00000553340 IPO8O15397 1037 aaKnown RBP22.09■■□□□ 1.13
SYNE3-202ENST00000553340 TMEM57Q8N5G2 664 aa22.09■■□□□ 1.13
SYNE3-202ENST00000553340 ZBTB40Q9NUA8 1239 aa22.08■■□□□ 1.13
SYNE3-202ENST00000553340 KIF16BQ96L93 1317 aa22.08■■□□□ 1.13
SYNE3-202ENST00000553340 DDX11L8A8MPP1 907 aa22.08■■□□□ 1.12
SYNE3-202ENST00000553340 A0A1W2PP64 1363 aa22.06■■□□□ 1.12
SYNE3-202ENST00000553340 RBM25P49756 843 aaKnown RBP22.06■■□□□ 1.12
SYNE3-202ENST00000553340 GGNBP2Q9H3C7 697 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 ASXL2Q76L83 1435 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 COL3A1P02461 1466 aaPredicted RBP22.05■■□□□ 1.12
SYNE3-202ENST00000553340 RIPK4P57078 832 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 NUCB1Q02818 461 aa22.05■■□□□ 1.12
SYNE3-202ENST00000553340 MRE11P49959 708 aa22.04■■□□□ 1.12
SYNE3-202ENST00000553340 NUTM2DQ5VT03 806 aaPredicted RBP22.04■■□□□ 1.12
SYNE3-202ENST00000553340 ZNF692Q9BU19 519 aaPredicted RBP22.04■■□□□ 1.12
SYNE3-202ENST00000553340 SNX21Q969T3 373 aa22.04■■□□□ 1.12
SYNE3-202ENST00000553340 HECW2Q9P2P5 1572 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 NCOA3Q9Y6Q9 1424 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 PANK2Q9BZ23 570 aa22.03■■□□□ 1.12
SYNE3-202ENST00000553340 PNNQ9H307 717 aaKnown RBP22.03■■□□□ 1.12
SYNE3-202ENST00000553340 SAFB2Q14151 953 aaKnown RBP eCLIP22.03■■□□□ 1.12
SYNE3-202ENST00000553340 SRPK2P78362 688 aaKnown RBP22.02■■□□□ 1.12
SYNE3-202ENST00000553340 ALDH1L2Q3SY69 923 aa22.02■■□□□ 1.12
SYNE3-202ENST00000553340 FRMPD1Q5SYB0 1578 aa22.02■■□□□ 1.11
SYNE3-202ENST00000553340 ABCC3O15438 1527 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 DDIT3P35638 169 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 LNPKQ9C0E8 428 aa22.01■■□□□ 1.11
SYNE3-202ENST00000553340 ISY1Q9ULR0 285 aaKnown RBP22.01■■□□□ 1.11
SYNE3-202ENST00000553340 CAMSAP1Q5T5Y3 1602 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 CHD1LQ86WJ1 897 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 NEXMIFQ5QGS0 1516 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 UBE2Q2Q8WVN8 375 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 TERF2IPQ9NYB0 399 aa22■■□□□ 1.11
SYNE3-202ENST00000553340 DIAPH1O60610 1272 aaKnown RBP21.99■■□□□ 1.11
SYNE3-202ENST00000553340 MLH3Q9UHC1 1453 aa21.99■■□□□ 1.11
SYNE3-202ENST00000553340 FYB1O15117 783 aa21.99■■□□□ 1.11
SYNE3-202ENST00000553340 MED14O60244 1454 aa21.98■■□□□ 1.11
SYNE3-202ENST00000553340 CIZ1Q9ULV3 898 aaPredicted RBP21.98■■□□□ 1.11
SYNE3-202ENST00000553340 POGZQ7Z3K3 1410 aa21.98■■□□□ 1.11
SYNE3-202ENST00000553340 ATAD2Q6PL18 1390 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 CLCN1P35523 988 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 BMP2KLQ5H9B9 411 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 PIK3C2BO00750 1634 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 GRPEL1Q9HAV7 217 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 ANKRD26Q9UPS8 1709 aa21.97■■□□□ 1.11
SYNE3-202ENST00000553340 HSP90AB1P08238 724 aaKnown RBP21.96■■□□□ 1.11
SYNE3-202ENST00000553340 ZNF428Q96B54 188 aa21.96■■□□□ 1.11
SYNE3-202ENST00000553340 STK26Q9P289 416 aa21.96■■□□□ 1.11
SYNE3-202ENST00000553340 GBP4Q96PP9 640 aa21.95■■□□□ 1.11
SYNE3-202ENST00000553340 CHMP4BQ9H444 224 aaKnown RBP21.95■■□□□ 1.11
SYNE3-202ENST00000553340 TNPO1Q92973 898 aaKnown RBP21.95■■□□□ 1.1
SYNE3-202ENST00000553340 SIGLEC1Q9BZZ2 1709 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 BRPF1P55201 1214 aaPredicted RBP21.94■■□□□ 1.1
SYNE3-202ENST00000553340 GCC1Q96CN9 775 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 PNPLA6Q8IY17 1366 aa21.94■■□□□ 1.1
SYNE3-202ENST00000553340 FCHSD2O94868 740 aa21.93■■□□□ 1.1
SYNE3-202ENST00000553340 CFAP74Q9C0B2 1584 aa21.93■■□□□ 1.1
SYNE3-202ENST00000553340 ZFYVE9O95405 1425 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 ANKRD45Q5TZF3 282 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 PTMSP20962 102 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 RAB3GAP1Q15042 981 aa21.92■■□□□ 1.1
SYNE3-202ENST00000553340 SKOR2Q2VWA4 1001 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 ZBTB7BO15156 539 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 HSP90AA1P07900 732 aaKnown RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 HDGFL2Q7Z4V5 671 aaPredicted RBP21.91■■□□□ 1.1
SYNE3-202ENST00000553340 CD163L1Q9NR16 1453 aa21.9■■□□□ 1.1
SYNE3-202ENST00000553340 MINK1Q8N4C8 1332 aaPredicted RBP21.9■■□□□ 1.1
SYNE3-202ENST00000553340 PPIP5K1Q6PFW1 1433 aa21.89■■□□□ 1.1
SYNE3-202ENST00000553340 ARHGAP45Q92619 1136 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 KIF2CQ99661 725 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 IDI1Q13907 227 aa21.89■■□□□ 1.09
SYNE3-202ENST00000553340 NAP1L5Q96NT1 182 aaPredicted RBP21.89■■□□□ 1.09
SYNE3-202ENST00000553340 PTPRMP28827 1452 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 PRKAR2BP31323 418 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 PRAM1Q96QH2 718 aa21.88■■□□□ 1.09
SYNE3-202ENST00000553340 LRRC7Q96NW7 1537 aa21.87■■□□□ 1.09
SYNE3-202ENST00000553340 CDC42BPGQ6DT37 1551 aa21.87■■□□□ 1.09
SYNE3-202ENST00000553340 CLTCQ00610 1675 aaKnown RBP21.87■■□□□ 1.09
SYNE3-202ENST00000553340 K7ELQ4 463 aaPredicted RBP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 CALD1Q05682 793 aaKnown RBP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 FAM135BQ49AJ0 1406 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 PIK3R4Q99570 1358 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 NPM1P06748 294 aaKnown RBP eCLIP21.86■■□□□ 1.09
SYNE3-202ENST00000553340 TBC1D9Q6ZT07 1266 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 SLC52A1Q9NWF4 448 aa21.86■■□□□ 1.09
SYNE3-202ENST00000553340 VAMP4O75379 141 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 MRPL50Q8N5N7 158 aaKnown RBP21.85■■□□□ 1.09
SYNE3-202ENST00000553340 ARHGAP31Q2M1Z3 1444 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 SENP3Q9H4L4 574 aaPredicted RBP21.85■■□□□ 1.09
SYNE3-202ENST00000553340 PTCH1Q13635 1447 aa21.85■■□□□ 1.09
SYNE3-202ENST00000553340 ESPNB1AK53 854 aa21.84■■□□□ 1.09
SYNE3-202ENST00000553340 C1orf115Q9H7X2 142 aa21.84■■□□□ 1.09
SYNE3-202ENST00000553340 CD2BP2O95400 341 aaKnown RBP21.83■■□□□ 1.09
SYNE3-202ENST00000553340 TRIM44Q96DX7 344 aaPredicted RBP21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms