RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 CARD14Q9BXL6 1004 aa29.25■■■□□ 2.27
VPS29-206ENST00000549578 SSH2Q76I76 1423 aa29.24■■■□□ 2.27
VPS29-206ENST00000549578 SBNO1A3KN83 1393 aa29.24■■■□□ 2.27
VPS29-206ENST00000549578 EDC4Q6P2E9 1401 aaKnown RBP29.23■■■□□ 2.27
VPS29-206ENST00000549578 SPATA31A3Q5VYP0 1347 aa29.21■■■□□ 2.27
VPS29-206ENST00000549578 TTC21BQ7Z4L5 1316 aa29.21■■■□□ 2.27
VPS29-206ENST00000549578 TNS3Q68CZ2 1445 aa29.21■■■□□ 2.27
VPS29-206ENST00000549578 NSD3Q9BZ95 1437 aa29.21■■■□□ 2.27
VPS29-206ENST00000549578 BRD4O60885 1362 aaPredicted RBP29.2■■■□□ 2.27
VPS29-206ENST00000549578 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.2■■■□□ 2.27
VPS29-206ENST00000549578 LRRC59Q96AG4 307 aaKnown RBP29.2■■■□□ 2.27
VPS29-206ENST00000549578 LMOD2Q6P5Q4 547 aa29.2■■■□□ 2.26
VPS29-206ENST00000549578 ALS2Q96Q42 1657 aa29.19■■■□□ 2.26
VPS29-206ENST00000549578 DDX10Q13206 875 aaKnown RBP29.17■■■□□ 2.26
VPS29-206ENST00000549578 TTC21AQ8NDW8 1320 aa29.16■■■□□ 2.26
VPS29-206ENST00000549578 PIK3C2AO00443 1686 aa29.15■■■□□ 2.26
VPS29-206ENST00000549578 ABTB2Q8N961 1025 aa29.15■■■□□ 2.26
VPS29-206ENST00000549578 NUTM2GQ5VZR2 741 aa29.14■■■□□ 2.25
VPS29-206ENST00000549578 NME9Q86XW9 330 aa29.14■■■□□ 2.25
VPS29-206ENST00000549578 ARHGEF10O15013 1369 aa29.13■■■□□ 2.25
VPS29-206ENST00000549578 PNPLA6Q8IY17 1366 aa29.13■■■□□ 2.25
VPS29-206ENST00000549578 PLEKHG5O94827 1062 aa29.11■■■□□ 2.25
VPS29-206ENST00000549578 ZRANB1Q9UGI0 708 aa29.11■■■□□ 2.25
VPS29-206ENST00000549578 PER1O15534 1290 aaPredicted RBP29.1■■■□□ 2.25
VPS29-206ENST00000549578 JCADQ9P266 1359 aa29.1■■■□□ 2.25
VPS29-206ENST00000549578 KNSTRNQ9Y448 316 aa29.1■■■□□ 2.25
VPS29-206ENST00000549578 SHPRHQ149N8 1683 aa29.09■■■□□ 2.25
VPS29-206ENST00000549578 NLRP6P59044 892 aa29.09■■■□□ 2.25
VPS29-206ENST00000549578 ILDR1Q86SU0 546 aaPredicted RBP29.09■■■□□ 2.25
VPS29-206ENST00000549578 CGNL1Q0VF96 1302 aa29.08■■■□□ 2.25
VPS29-206ENST00000549578 KIF20BQ96Q89 1820 aa29.08■■■□□ 2.25
VPS29-206ENST00000549578 FYB1O15117 783 aa29.08■■■□□ 2.25
VPS29-206ENST00000549578 GGNBP2Q9H3C7 697 aa29.07■■■□□ 2.24
VPS29-206ENST00000549578 COL22A1Q8NFW1 1626 aaPredicted RBP29.07■■■□□ 2.24
VPS29-206ENST00000549578 CABLES1Q8TDN4 633 aa29.05■■■□□ 2.24
VPS29-206ENST00000549578 MARF1Q9Y4F3 1742 aaKnown RBP29.05■■■□□ 2.24
VPS29-206ENST00000549578 NLRP13Q86W25 1043 aa29.04■■■□□ 2.24
VPS29-206ENST00000549578 MED1Q15648 1581 aaPredicted RBP29.04■■■□□ 2.24
VPS29-206ENST00000549578 USP31Q70CQ4 1352 aa29.04■■■□□ 2.24
VPS29-206ENST00000549578 AMER1Q5JTC6 1135 aaPredicted RBP29.03■■■□□ 2.24
VPS29-206ENST00000549578 OVOS2A0A0J9YW53 1432 aa29.02■■■□□ 2.24
VPS29-206ENST00000549578 OVOS2Q6IE36 1432 aa29.02■■■□□ 2.24
VPS29-206ENST00000549578 CRYBG1Q9Y4K1 1723 aa29.02■■■□□ 2.24
VPS29-206ENST00000549578 USP54Q70EL1 1684 aa29.01■■■□□ 2.24
VPS29-206ENST00000549578 USP19O94966 1318 aa29.01■■■□□ 2.23
VPS29-206ENST00000549578 ABCA3Q99758 1704 aa29.01■■■□□ 2.23
VPS29-206ENST00000549578 CNGB1Q14028 1251 aaPredicted RBP29■■■□□ 2.23
VPS29-206ENST00000549578 COG3Q96JB2 828 aa29■■■□□ 2.23
VPS29-206ENST00000549578 PHRF1Q9P1Y6 1649 aaKnown RBP28.99■■■□□ 2.23
VPS29-206ENST00000549578 NUTM2BA6NNL0 878 aaPredicted RBP28.98■■■□□ 2.23
VPS29-206ENST00000549578 NUTM2EB1AL46 878 aaPredicted RBP28.98■■■□□ 2.23
VPS29-206ENST00000549578 NUTM2AQ8IVF1 878 aaPredicted RBP28.98■■■□□ 2.23
VPS29-206ENST00000549578 SLIT3O75094 1523 aa28.97■■■□□ 2.23
VPS29-206ENST00000549578 NSD2O96028 1365 aa28.97■■■□□ 2.23
VPS29-206ENST00000549578 ANKRD26Q9UPS8 1709 aa28.97■■■□□ 2.23
VPS29-206ENST00000549578 CC2D1BQ5T0F9 858 aaKnown RBP28.97■■■□□ 2.23
VPS29-206ENST00000549578 SPATA31A6Q5VVP1 1343 aa28.96■■■□□ 2.23
VPS29-206ENST00000549578 SOX12O15370 315 aa28.96■■■□□ 2.23
VPS29-206ENST00000549578 HAP1P54257 671 aaPredicted RBP28.96■■■□□ 2.23
VPS29-206ENST00000549578 GCP02774 474 aa28.94■■■□□ 2.22
VPS29-206ENST00000549578 NPC1L1Q9UHC9 1359 aa28.93■■■□□ 2.22
VPS29-206ENST00000549578 LRP6O75581 1613 aa28.93■■■□□ 2.22
VPS29-206ENST00000549578 NFAT5O94916 1531 aa28.9■■■□□ 2.22
VPS29-206ENST00000549578 MORC1Q86VD1 984 aa28.9■■■□□ 2.22
VPS29-206ENST00000549578 ADAMTS2O95450 1211 aa28.89■■■□□ 2.22
VPS29-206ENST00000549578 FBLN1P23142 703 aa28.89■■■□□ 2.22
VPS29-206ENST00000549578 KCNH5Q8NCM2 988 aa28.89■■■□□ 2.22
VPS29-206ENST00000549578 TNNT2P45379 298 aaPredicted RBP28.89■■■□□ 2.21
VPS29-206ENST00000549578 ZC3H6P61129 1189 aaKnown RBP28.89■■■□□ 2.21
VPS29-206ENST00000549578 KIAA0232Q92628 1395 aa28.86■■■□□ 2.21
VPS29-206ENST00000549578 ZBTB7CA1YPR0 619 aa28.84■■■□□ 2.21
VPS29-206ENST00000549578 CPDO75976 1380 aa28.82■■■□□ 2.2
VPS29-206ENST00000549578 RRS1Q15050 365 aaKnown RBP28.82■■■□□ 2.2
VPS29-206ENST00000549578 PRDM11Q9NQV5 511 aa28.82■■■□□ 2.2
VPS29-206ENST00000549578 CHRNA2Q15822 529 aa28.81■■■□□ 2.2
VPS29-206ENST00000549578 ARHGEF25Q86VW2 580 aa28.81■■■□□ 2.2
VPS29-206ENST00000549578 LTN1O94822 1766 aa28.81■■■□□ 2.2
VPS29-206ENST00000549578 MEX3CQ5U5Q3 659 aaKnown RBP28.8■■■□□ 2.2
VPS29-206ENST00000549578 MAP3K19Q56UN5 1328 aa28.79■■■□□ 2.2
VPS29-206ENST00000549578 AATKQ6ZMQ8 1374 aa28.79■■■□□ 2.2
VPS29-206ENST00000549578 FAM83GA6ND36 823 aa28.79■■■□□ 2.2
VPS29-206ENST00000549578 PARD3Q8TEW0 1356 aa28.79■■■□□ 2.2
VPS29-206ENST00000549578 C8orf37Q96NL8 207 aa28.78■■■□□ 2.2
VPS29-206ENST00000549578 MAP2P11137 1827 aaKnown RBP28.77■■■□□ 2.2
VPS29-206ENST00000549578 EMILIN1Q9Y6C2 1016 aa28.76■■■□□ 2.19
VPS29-206ENST00000549578 POLKQ9UBT6 870 aa28.75■■■□□ 2.19
VPS29-206ENST00000549578 COL14A1Q05707 1796 aaKnown RBP28.75■■■□□ 2.19
VPS29-206ENST00000549578 PEAK1Q9H792 1746 aa28.74■■■□□ 2.19
VPS29-206ENST00000549578 COL18A1P39060 1754 aa28.73■■■□□ 2.19
VPS29-206ENST00000549578 PLCH1Q4KWH8 1693 aa28.73■■■□□ 2.19
VPS29-206ENST00000549578 PPM1GO15355 546 aaPredicted RBP28.73■■■□□ 2.19
VPS29-206ENST00000549578 NGLY1Q96IV0 654 aa28.73■■■□□ 2.19
VPS29-206ENST00000549578 PRKRIP1Q9H875 184 aaPredicted RBP28.73■■■□□ 2.19
VPS29-206ENST00000549578 LMO7Q8WWI1 1683 aa28.72■■■□□ 2.19
VPS29-206ENST00000549578 AMPHP49418 695 aa28.72■■■□□ 2.19
VPS29-206ENST00000549578 RALBP1Q15311 655 aa28.72■■■□□ 2.19
VPS29-206ENST00000549578 AXIN2Q9Y2T1 843 aa28.7■■■□□ 2.19
VPS29-206ENST00000549578 CAMTA1Q9Y6Y1 1673 aa28.7■■■□□ 2.18
VPS29-206ENST00000549578 SMG6Q86US8 1419 aaKnown RBP28.7■■■□□ 2.18
VPS29-206ENST00000549578 PPP2R1AP30153 589 aa28.69■■■□□ 2.18
Retrieved 100 of 20,778 RNA–protein pairs in 7 ms