RNA–Protein interactions for RNA: ENST00000548938.5

HDAC7-228, Transcript of histone deacetylase 7, humanhuman

TSL 5

Gene HDAC7, Length 2,719 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC7-228ENST00000548938 SLC52A1Q9NWF4 448 aa17.35■□□□□ 0.37
HDAC7-228ENST00000548938 CFAP53Q96M91 514 aa17.34■□□□□ 0.37
HDAC7-228ENST00000548938 PPLO60437 1756 aa17.34■□□□□ 0.37
HDAC7-228ENST00000548938 U2AF1L5P0DN76 240 aaPredicted RBP17.34■□□□□ 0.37
HDAC7-228ENST00000548938 U2AF1Q01081 240 aaKnown RBP eCLIP17.34■□□□□ 0.37
HDAC7-228ENST00000548938 PPP6R1Q9UPN7 881 aa17.34■□□□□ 0.37
HDAC7-228ENST00000548938 MLECQ14165 292 aa17.33■□□□□ 0.36
HDAC7-228ENST00000548938 QRICH2Q9H0J4 1663 aa17.33■□□□□ 0.36
HDAC7-228ENST00000548938 SMC4Q9NTJ3 1288 aa17.33■□□□□ 0.36
HDAC7-228ENST00000548938 ARHGEF40Q8TER5 1519 aa17.33■□□□□ 0.36
HDAC7-228ENST00000548938 TRIM27P14373 513 aa17.32■□□□□ 0.36
HDAC7-228ENST00000548938 NUTM2DQ5VT03 806 aaPredicted RBP17.32■□□□□ 0.36
HDAC7-228ENST00000548938 ZNF692Q9BU19 519 aaPredicted RBP17.32■□□□□ 0.36
HDAC7-228ENST00000548938 C14orf93Q9H972 538 aaKnown RBP17.32■□□□□ 0.36
HDAC7-228ENST00000548938 HSCBQ8IWL3 235 aa17.32■□□□□ 0.36
HDAC7-228ENST00000548938 PREX1Q8TCU6 1659 aa17.32■□□□□ 0.36
HDAC7-228ENST00000548938 ITPRIPQ8IWB1 547 aa17.31■□□□□ 0.36
HDAC7-228ENST00000548938 PNNQ9H307 717 aaKnown RBP17.31■□□□□ 0.36
HDAC7-228ENST00000548938 ADGRB2O60241 1585 aa17.31■□□□□ 0.36
HDAC7-228ENST00000548938 USP32Q8NFA0 1604 aa17.31■□□□□ 0.36
HDAC7-228ENST00000548938 CLCN1P35523 988 aa17.31■□□□□ 0.36
HDAC7-228ENST00000548938 HDAC1Q13547 482 aaPredicted RBP17.31■□□□□ 0.36
HDAC7-228ENST00000548938 SETBP1Q9Y6X0 1596 aa17.31■□□□□ 0.36
HDAC7-228ENST00000548938 EXOSC9Q06265 439 aaKnown RBP17.3■□□□□ 0.36
HDAC7-228ENST00000548938 NAP1L5Q96NT1 182 aaPredicted RBP17.3■□□□□ 0.36
HDAC7-228ENST00000548938 NEXMIFQ5QGS0 1516 aa17.29■□□□□ 0.36
HDAC7-228ENST00000548938 VGFO15240 615 aaPredicted RBP17.29■□□□□ 0.36
HDAC7-228ENST00000548938 MRE11P49959 708 aa17.29■□□□□ 0.36
HDAC7-228ENST00000548938 TMEM132EQ6IEE7 984 aa17.29■□□□□ 0.36
HDAC7-228ENST00000548938 SSH1Q8WYL5 1049 aa17.29■□□□□ 0.36
HDAC7-228ENST00000548938 NCOA3Q9Y6Q9 1424 aa17.28■□□□□ 0.36
HDAC7-228ENST00000548938 DDX11L8A8MPP1 907 aa17.28■□□□□ 0.36
HDAC7-228ENST00000548938 DDX19BQ9UMR2 479 aa17.28■□□□□ 0.36
HDAC7-228ENST00000548938 SMC5Q8IY18 1101 aa17.27■□□□□ 0.36
HDAC7-228ENST00000548938 GRPEL1Q9HAV7 217 aa17.27■□□□□ 0.36
HDAC7-228ENST00000548938 CT47B1P0C2W7 299 aaPredicted RBP17.27■□□□□ 0.36
HDAC7-228ENST00000548938 ADGRB1O14514 1584 aa17.27■□□□□ 0.35
HDAC7-228ENST00000548938 DDIT3P35638 169 aa17.27■□□□□ 0.35
HDAC7-228ENST00000548938 NCBP3Q53F19 620 aaKnown RBP17.27■□□□□ 0.35
HDAC7-228ENST00000548938 ATF7IPQ6VMQ6 1270 aa17.27■□□□□ 0.35
HDAC7-228ENST00000548938 CLTCQ00610 1675 aaKnown RBP17.26■□□□□ 0.35
HDAC7-228ENST00000548938 TMEM57Q8N5G2 664 aa17.26■□□□□ 0.35
HDAC7-228ENST00000548938 TMEM131LA2VDJ0 1609 aa17.25■□□□□ 0.35
HDAC7-228ENST00000548938 NOB1Q9ULX3 412 aaKnown RBP17.25■□□□□ 0.35
HDAC7-228ENST00000548938 RBM25P49756 843 aaKnown RBP17.24■□□□□ 0.35
HDAC7-228ENST00000548938 TRIM35Q9UPQ4 493 aa17.24■□□□□ 0.35
HDAC7-228ENST00000548938 ZFYVE9O95405 1425 aa17.24■□□□□ 0.35
HDAC7-228ENST00000548938 ANKRD36BQ8N2N9 1353 aa17.23■□□□□ 0.35
HDAC7-228ENST00000548938 U2SURPO15042 1029 aaKnown RBP17.23■□□□□ 0.35
HDAC7-228ENST00000548938 TMPOP42166 694 aaKnown RBP17.23■□□□□ 0.35
HDAC7-228ENST00000548938 TNPO1Q92973 898 aaKnown RBP17.23■□□□□ 0.35
HDAC7-228ENST00000548938 LNPKQ9C0E8 428 aa17.23■□□□□ 0.35
HDAC7-228ENST00000548938 ZBTB40Q9NUA8 1239 aa17.23■□□□□ 0.35
HDAC7-228ENST00000548938 ERBB4Q15303 1308 aa17.23■□□□□ 0.35
HDAC7-228ENST00000548938 MYO5BQ9ULV0 1848 aa17.22■□□□□ 0.35
HDAC7-228ENST00000548938 PLEKHF1Q96S99 279 aa17.22■□□□□ 0.35
HDAC7-228ENST00000548938 NSD2O96028 1365 aa17.22■□□□□ 0.35
HDAC7-228ENST00000548938 TULP4Q9NRJ4 1543 aa17.22■□□□□ 0.35
HDAC7-228ENST00000548938 SNX21Q969T3 373 aa17.21■□□□□ 0.35
HDAC7-228ENST00000548938 SENP3Q9H4L4 574 aaPredicted RBP17.21■□□□□ 0.35
HDAC7-228ENST00000548938 NUCB1Q02818 461 aa17.21■□□□□ 0.35
HDAC7-228ENST00000548938 SPATA31D1Q6ZQQ2 1576 aa17.21■□□□□ 0.35
HDAC7-228ENST00000548938 GAS2L3Q86XJ1 694 aa17.2■□□□□ 0.34
HDAC7-228ENST00000548938 STAG3Q9UJ98 1225 aa17.2■□□□□ 0.34
HDAC7-228ENST00000548938 ESPNB1AK53 854 aa17.2■□□□□ 0.34
HDAC7-228ENST00000548938 HSP90AB1P08238 724 aaKnown RBP17.2■□□□□ 0.34
HDAC7-228ENST00000548938 ESF1Q9H501 851 aaKnown RBP17.2■□□□□ 0.34
HDAC7-228ENST00000548938 ABCC11Q96J66 1382 aa17.2■□□□□ 0.34
HDAC7-228ENST00000548938 ISY1Q9ULR0 285 aaKnown RBP17.2■□□□□ 0.34
HDAC7-228ENST00000548938 CABP2Q9NPB3 220 aa17.19■□□□□ 0.34
HDAC7-228ENST00000548938 EVC2Q86UK5 1308 aa17.19■□□□□ 0.34
HDAC7-228ENST00000548938 COL3A1P02461 1466 aaPredicted RBP17.18■□□□□ 0.34
HDAC7-228ENST00000548938 RAB3GAP1Q15042 981 aa17.18■□□□□ 0.34
HDAC7-228ENST00000548938 CHD1LQ86WJ1 897 aa17.18■□□□□ 0.34
HDAC7-228ENST00000548938 FOXD4L1Q9NU39 408 aa17.18■□□□□ 0.34
HDAC7-228ENST00000548938 KIF16BQ96L93 1317 aa17.17■□□□□ 0.34
HDAC7-228ENST00000548938 CD2BP2O95400 341 aaKnown RBP17.17■□□□□ 0.34
HDAC7-228ENST00000548938 KIF2CQ99661 725 aa17.17■□□□□ 0.34
HDAC7-228ENST00000548938 CIZ1Q9ULV3 898 aaPredicted RBP17.17■□□□□ 0.34
HDAC7-228ENST00000548938 TRHP20396 242 aaPredicted RBP17.17■□□□□ 0.34
HDAC7-228ENST00000548938 GBP4Q96PP9 640 aa17.17■□□□□ 0.34
HDAC7-228ENST00000548938 GGNBP2Q9H3C7 697 aa17.17■□□□□ 0.34
HDAC7-228ENST00000548938 HSP90AA1P07900 732 aaKnown RBP17.16■□□□□ 0.34
HDAC7-228ENST00000548938 A2ML1A8K2U0 1454 aa17.16■□□□□ 0.34
HDAC7-228ENST00000548938 SAFB2Q14151 953 aaKnown RBP eCLIP17.16■□□□□ 0.34
HDAC7-228ENST00000548938 A0A1W2PP64 1363 aa17.15■□□□□ 0.34
HDAC7-228ENST00000548938 IL16Q14005 1332 aa17.15■□□□□ 0.34
HDAC7-228ENST00000548938 RIPK4P57078 832 aa17.15■□□□□ 0.34
HDAC7-228ENST00000548938 BMP2KLQ5H9B9 411 aa17.15■□□□□ 0.34
HDAC7-228ENST00000548938 ARHGEF28Q8N1W1 1705 aaKnown RBP17.15■□□□□ 0.34
HDAC7-228ENST00000548938 IPO8O15397 1037 aaKnown RBP17.14■□□□□ 0.33
HDAC7-228ENST00000548938 TRIM44Q96DX7 344 aaPredicted RBP17.14■□□□□ 0.33
HDAC7-228ENST00000548938 PUS7Q96PZ0 661 aaKnown RBP17.13■□□□□ 0.33
HDAC7-228ENST00000548938 STK26Q9P289 416 aa17.13■□□□□ 0.33
HDAC7-228ENST00000548938 HSP90AA2PQ14568 343 aaPredicted RBP17.12■□□□□ 0.33
HDAC7-228ENST00000548938 RBM42Q9BTD8 480 aaKnown RBP17.12■□□□□ 0.33
HDAC7-228ENST00000548938 ANKRD45Q5TZF3 282 aa17.12■□□□□ 0.33
HDAC7-228ENST00000548938 C1orf115Q9H7X2 142 aa17.12■□□□□ 0.33
HDAC7-228ENST00000548938 PPIP5K1Q6PFW1 1433 aa17.11■□□□□ 0.33
HDAC7-228ENST00000548938 SKOR2Q2VWA4 1001 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms