RNA–Protein interactions for RNA: ENST00000547654.5

SCAF11-210, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-210ENST00000547654 TRIM46Q7Z4K8 759 aa9.43□□□□□ -0.9
SCAF11-210ENST00000547654 FAM181BA6NEQ2 426 aa9.42□□□□□ -0.9
SCAF11-210ENST00000547654 VARSP26640 1264 aaKnown RBP9.42□□□□□ -0.9
SCAF11-210ENST00000547654 DIXDC1Q155Q3 683 aa9.42□□□□□ -0.9
SCAF11-210ENST00000547654 NNTQ13423 1086 aa9.41□□□□□ -0.9
SCAF11-210ENST00000547654 BCANQ96GW7 911 aa9.41□□□□□ -0.9
SCAF11-210ENST00000547654 TBC1D2Q9BYX2 928 aa9.41□□□□□ -0.9
SCAF11-210ENST00000547654 NXF1Q9UBU9 619 aaKnown RBP9.41□□□□□ -0.9
SCAF11-210ENST00000547654 LORP23490 312 aaPredicted RBP9.4□□□□□ -0.9
SCAF11-210ENST00000547654 RSBN1LQ6PCB5 846 aaPredicted RBP9.4□□□□□ -0.9
SCAF11-210ENST00000547654 TRIM66O15016 1216 aa9.39□□□□□ -0.91
SCAF11-210ENST00000547654 GJA5P36382 358 aa9.39□□□□□ -0.91
SCAF11-210ENST00000547654 PARP9Q8IXQ6 854 aa9.38□□□□□ -0.91
SCAF11-210ENST00000547654 FAM174AQ8TBP5 190 aa9.38□□□□□ -0.91
SCAF11-210ENST00000547654 ZBTB3Q9H5J0 574 aa9.38□□□□□ -0.91
SCAF11-210ENST00000547654 ADH1CP00326 375 aa9.37□□□□□ -0.91
SCAF11-210ENST00000547654 IRF7Q92985 503 aa9.37□□□□□ -0.91
SCAF11-210ENST00000547654 WDR4P57081 412 aaKnown RBP9.36□□□□□ -0.91
SCAF11-210ENST00000547654 SCARF1Q14162 830 aa9.36□□□□□ -0.91
SCAF11-210ENST00000547654 LYPD8Q6UX82 237 aa9.36□□□□□ -0.91
SCAF11-210ENST00000547654 NPAS3Q8IXF0 933 aa9.36□□□□□ -0.91
SCAF11-210ENST00000547654 MPNDQ8N594 471 aa9.36□□□□□ -0.91
SCAF11-210ENST00000547654 ZFP42Q96MM3 310 aa9.36□□□□□ -0.91
SCAF11-210ENST00000547654 CFAP99D6REC4 459 aa9.35□□□□□ -0.91
SCAF11-210ENST00000547654 VEGFBP49765 207 aa9.35□□□□□ -0.91
SCAF11-210ENST00000547654 MRPL14Q6P1L8 145 aaKnown RBP9.35□□□□□ -0.91
SCAF11-210ENST00000547654 MAP10Q9P2G4 905 aa9.35□□□□□ -0.91
SCAF11-210ENST00000547654 PCDHB15Q9Y5E8 787 aa9.35□□□□□ -0.91
SCAF11-210ENST00000547654 SPTLC1O15269 473 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 ARID5BQ14865 1188 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 AGERQ15109 404 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 CSPP1Q1MSJ5 1256 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 ZSCAN1Q8NBB4 408 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 AK7Q96M32 723 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 SLC24A3Q9HC58 644 aa9.34□□□□□ -0.91
SCAF11-210ENST00000547654 H3BM21 787 aa9.33□□□□□ -0.92
SCAF11-210ENST00000547654 TIMP2P16035 220 aa9.33□□□□□ -0.92
SCAF11-210ENST00000547654 HRCP23327 699 aa9.33□□□□□ -0.92
SCAF11-210ENST00000547654 GMPRP36959 345 aa9.33□□□□□ -0.92
SCAF11-210ENST00000547654 TSC1Q92574 1164 aa9.33□□□□□ -0.92
SCAF11-210ENST00000547654 PURBQ96QR8 312 aaKnown RBP9.33□□□□□ -0.92
SCAF11-210ENST00000547654 PRPF38BQ5VTL8 546 aaKnown RBP9.32□□□□□ -0.92
SCAF11-210ENST00000547654 RIC3Q7Z5B4 369 aa9.32□□□□□ -0.92
SCAF11-210ENST00000547654 CABLES1Q8TDN4 633 aa9.32□□□□□ -0.92
SCAF11-210ENST00000547654 FOXJ1Q92949 421 aa9.32□□□□□ -0.92
SCAF11-210ENST00000547654 F12P00748 615 aaPredicted RBP9.31□□□□□ -0.92
SCAF11-210ENST00000547654 NUTM2BA6NNL0 878 aaPredicted RBP9.29□□□□□ -0.92
SCAF11-210ENST00000547654 NUTM2EB1AL46 878 aaPredicted RBP9.29□□□□□ -0.92
SCAF11-210ENST00000547654 NUTM2DQ5VT03 806 aaPredicted RBP9.29□□□□□ -0.92
SCAF11-210ENST00000547654 BPHLQ86WA6 291 aaPredicted RBP9.29□□□□□ -0.92
SCAF11-210ENST00000547654 NUTM2AQ8IVF1 878 aaPredicted RBP9.29□□□□□ -0.92
SCAF11-210ENST00000547654 ZIC2O95409 532 aaPredicted RBP9.28□□□□□ -0.92
SCAF11-210ENST00000547654 PDE4DQ08499 809 aa9.28□□□□□ -0.92
SCAF11-210ENST00000547654 CDK15Q96Q40 435 aa9.28□□□□□ -0.92
SCAF11-210ENST00000547654 ERBB4Q15303 1308 aa9.28□□□□□ -0.92
SCAF11-210ENST00000547654 NR5A1Q13285 461 aa9.27□□□□□ -0.93
SCAF11-210ENST00000547654 ZFAND3Q9H8U3 227 aa9.27□□□□□ -0.93
SCAF11-210ENST00000547654 SOBPA7XYQ1 873 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 PER1O15534 1290 aaPredicted RBP9.26□□□□□ -0.93
SCAF11-210ENST00000547654 MAN1A2O60476 641 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 UPP2O95045 317 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 NR3C2P08235 984 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 C6orf118Q5T5N4 469 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 NBPF14Q5TI25 921 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 KCTD17Q8N5Z5 321 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 ARMC2Q8NEN0 867 aa9.26□□□□□ -0.93
SCAF11-210ENST00000547654 KLF16Q9BXK1 252 aaPredicted RBP9.26□□□□□ -0.93
SCAF11-210ENST00000547654 MYSM1Q5VVJ2 828 aa9.25□□□□□ -0.93
SCAF11-210ENST00000547654 HELBQ8NG08 1087 aaPredicted RBP9.25□□□□□ -0.93
SCAF11-210ENST00000547654 ITPKCQ96DU7 683 aa9.25□□□□□ -0.93
SCAF11-210ENST00000547654 QPCTQ16769 361 aa9.24□□□□□ -0.93
SCAF11-210ENST00000547654 C4orf48Q5BLP8 95 aa9.24□□□□□ -0.93
SCAF11-210ENST00000547654 LIMD1Q9UGP4 676 aa9.24□□□□□ -0.93
SCAF11-210ENST00000547654 BMP2P12643 396 aa9.23□□□□□ -0.93
SCAF11-210ENST00000547654 FSHRP23945 695 aa9.23□□□□□ -0.93
SCAF11-210ENST00000547654 LINC00528Q8N1L1 170 aa9.22□□□□□ -0.93
SCAF11-210ENST00000547654 MAGEB6P1A0A0J9YX57 407 aa9.21□□□□□ -0.94
SCAF11-210ENST00000547654 TUSC1Q2TAM9 212 aa9.21□□□□□ -0.94
SCAF11-210ENST00000547654 LILRB3O75022 631 aa9.2□□□□□ -0.94
SCAF11-210ENST00000547654 GRM5P41594 1212 aa9.2□□□□□ -0.94
SCAF11-210ENST00000547654 CLK2P49760 499 aaKnown RBP9.2□□□□□ -0.94
SCAF11-210ENST00000547654 VASH1Q7L8A9 365 aaPredicted RBP9.2□□□□□ -0.94
SCAF11-210ENST00000547654 MEIOBQ8N635 442 aa9.2□□□□□ -0.94
SCAF11-210ENST00000547654 C1QTNF2Q9BXJ5 285 aa9.2□□□□□ -0.94
SCAF11-210ENST00000547654 VSIG8P0DPA2 414 aa9.19□□□□□ -0.94
SCAF11-210ENST00000547654 CARD14Q9BXL6 1004 aa9.19□□□□□ -0.94
SCAF11-210ENST00000547654 MAP4K5Q9Y4K4 846 aa9.19□□□□□ -0.94
SCAF11-210ENST00000547654 SH3RF1Q7Z6J0 888 aa9.18□□□□□ -0.94
SCAF11-210ENST00000547654 SH3BP5LQ7L8J4 393 aa9.17□□□□□ -0.94
SCAF11-210ENST00000547654 TRMT44Q8IYL2 757 aaKnown RBP9.17□□□□□ -0.94
SCAF11-210ENST00000547654 EMILIN1Q9Y6C2 1016 aa9.17□□□□□ -0.94
SCAF11-210ENST00000547654 RTL5Q5HYW3 569 aaPredicted RBP9.16□□□□□ -0.94
SCAF11-210ENST00000547654 CCDC116Q8IYX3 515 aa9.16□□□□□ -0.94
SCAF11-210ENST00000547654 GPKOWQ92917 476 aaPredicted RBP eCLIP9.16□□□□□ -0.94
SCAF11-210ENST00000547654 RSPH6AQ9H0K4 717 aa9.16□□□□□ -0.94
SCAF11-210ENST00000547654 GSK3AP49840 483 aa9.15□□□□□ -0.94
SCAF11-210ENST00000547654 TSEN34Q9BSV6 310 aaKnown RBP9.15□□□□□ -0.94
SCAF11-210ENST00000547654 SOS2Q07890 1332 aaPredicted RBP9.14□□□□□ -0.95
SCAF11-210ENST00000547654 PPFIA3O75145 1194 aa9.14□□□□□ -0.95
SCAF11-210ENST00000547654 GPBP1L1Q9HC44 474 aaPredicted RBP9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 290.3 ms