RNA–Protein interactions for RNA: ENST00000546816.5

CCDC38-204, Transcript of coiled-coil domain containing 38, humanhuman

TSL 2

Gene CCDC38, Length 465 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC38-204ENST00000546816 TLL2Q9Y6L7 1015 aa11.2□□□□□ -0.62
CCDC38-204ENST00000546816 CFAP99D6REC4 459 aa11.19□□□□□ -0.62
CCDC38-204ENST00000546816 BMP1P13497 986 aa11.19□□□□□ -0.62
CCDC38-204ENST00000546816 VARSP26640 1264 aaKnown RBP11.19□□□□□ -0.62
CCDC38-204ENST00000546816 HRCP23327 699 aa11.18□□□□□ -0.62
CCDC38-204ENST00000546816 AK7Q96M32 723 aa11.17□□□□□ -0.62
CCDC38-204ENST00000546816 F12P00748 615 aaPredicted RBP11.16□□□□□ -0.62
CCDC38-204ENST00000546816 ZBTB3Q9H5J0 574 aa11.16□□□□□ -0.62
CCDC38-204ENST00000546816 PLEKHG3A1L390 1219 aa11.15□□□□□ -0.62
CCDC38-204ENST00000546816 PRPF38BQ5VTL8 546 aaKnown RBP11.15□□□□□ -0.62
CCDC38-204ENST00000546816 RIC3Q7Z5B4 369 aa11.15□□□□□ -0.62
CCDC38-204ENST00000546816 CTHP32929 405 aa11.14□□□□□ -0.63
CCDC38-204ENST00000546816 INSM1Q01101 510 aaPredicted RBP11.14□□□□□ -0.63
CCDC38-204ENST00000546816 NNTQ13423 1086 aa11.13□□□□□ -0.63
CCDC38-204ENST00000546816 CABLES1Q8TDN4 633 aa11.13□□□□□ -0.63
CCDC38-204ENST00000546816 MAP10Q9P2G4 905 aa11.13□□□□□ -0.63
CCDC38-204ENST00000546816 NXF1Q9UBU9 619 aaKnown RBP11.13□□□□□ -0.63
CCDC38-204ENST00000546816 STK17AQ9UEE5 414 aa11.13□□□□□ -0.63
CCDC38-204ENST00000546816 FOXJ1Q92949 421 aa11.11□□□□□ -0.63
CCDC38-204ENST00000546816 KLF16Q9BXK1 252 aaPredicted RBP11.11□□□□□ -0.63
CCDC38-204ENST00000546816 TIMP2P16035 220 aa11.1□□□□□ -0.63
CCDC38-204ENST00000546816 FAM174AQ8TBP5 190 aa11.1□□□□□ -0.63
CCDC38-204ENST00000546816 ZFP42Q96MM3 310 aa11.1□□□□□ -0.63
CCDC38-204ENST00000546816 CDK15Q96Q40 435 aa11.1□□□□□ -0.63
CCDC38-204ENST00000546816 PER1O15534 1290 aaPredicted RBP11.09□□□□□ -0.63
CCDC38-204ENST00000546816 ADH1CP00326 375 aa11.09□□□□□ -0.63
CCDC38-204ENST00000546816 TUSC1Q2TAM9 212 aa11.09□□□□□ -0.63
CCDC38-204ENST00000546816 MYSM1Q5VVJ2 828 aa11.09□□□□□ -0.63
CCDC38-204ENST00000546816 NPAS3Q8IXF0 933 aa11.09□□□□□ -0.63
CCDC38-204ENST00000546816 LIMD1Q9UGP4 676 aa11.09□□□□□ -0.63
CCDC38-204ENST00000546816 PDE4DQ08499 809 aa11.08□□□□□ -0.64
CCDC38-204ENST00000546816 SLC16A10Q8TF71 515 aa11.08□□□□□ -0.64
CCDC38-204ENST00000546816 WDR4P57081 412 aaKnown RBP11.07□□□□□ -0.64
CCDC38-204ENST00000546816 QPCTQ16769 361 aa11.07□□□□□ -0.64
CCDC38-204ENST00000546816 CSPP1Q1MSJ5 1256 aa11.07□□□□□ -0.64
CCDC38-204ENST00000546816 C4orf48Q5BLP8 95 aa11.07□□□□□ -0.64
CCDC38-204ENST00000546816 MRPL14Q6P1L8 145 aaKnown RBP11.06□□□□□ -0.64
CCDC38-204ENST00000546816 LILRB3O75022 631 aa11.05□□□□□ -0.64
CCDC38-204ENST00000546816 H3BM21 787 aa11.03□□□□□ -0.64
CCDC38-204ENST00000546816 GMPRP36959 345 aa11.03□□□□□ -0.64
CCDC38-204ENST00000546816 GRM5P41594 1212 aa11.02□□□□□ -0.65
CCDC38-204ENST00000546816 VEGFBP49765 207 aa11.02□□□□□ -0.65
CCDC38-204ENST00000546816 SCARF1Q14162 830 aa11.02□□□□□ -0.65
CCDC38-204ENST00000546816 IRF7Q92985 503 aa11.02□□□□□ -0.65
CCDC38-204ENST00000546816 PURBQ96QR8 312 aaKnown RBP11.02□□□□□ -0.65
CCDC38-204ENST00000546816 NUTM2BA6NNL0 878 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 NUTM2EB1AL46 878 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 NR3C2P08235 984 aa11.01□□□□□ -0.65
CCDC38-204ENST00000546816 LORP23490 312 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 NR5A1Q13285 461 aa11.01□□□□□ -0.65
CCDC38-204ENST00000546816 ARID5BQ14865 1188 aa11.01□□□□□ -0.65
CCDC38-204ENST00000546816 NUTM2DQ5VT03 806 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 BPHLQ86WA6 291 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 NUTM2AQ8IVF1 878 aaPredicted RBP11.01□□□□□ -0.65
CCDC38-204ENST00000546816 RTL5Q5HYW3 569 aaPredicted RBP11□□□□□ -0.65
CCDC38-204ENST00000546816 SH3RF1Q7Z6J0 888 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 TSC1Q92574 1164 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 ITPKCQ96DU7 683 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 C1QTNF2Q9BXJ5 285 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 ZFAND3Q9H8U3 227 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 SLC24A3Q9HC58 644 aa11□□□□□ -0.65
CCDC38-204ENST00000546816 ZIC2O95409 532 aaPredicted RBP10.99□□□□□ -0.65
CCDC38-204ENST00000546816 AGERQ15109 404 aa10.99□□□□□ -0.65
CCDC38-204ENST00000546816 ERBB4Q15303 1308 aa10.99□□□□□ -0.65
CCDC38-204ENST00000546816 ARMC2Q8NEN0 867 aa10.98□□□□□ -0.65
CCDC38-204ENST00000546816 SH3BP5LQ7L8J4 393 aa10.97□□□□□ -0.65
CCDC38-204ENST00000546816 SOBPA7XYQ1 873 aa10.96□□□□□ -0.65
CCDC38-204ENST00000546816 CLK2P49760 499 aaKnown RBP10.96□□□□□ -0.65
CCDC38-204ENST00000546816 HELBQ8NG08 1087 aaPredicted RBP10.96□□□□□ -0.65
CCDC38-204ENST00000546816 MAP4K5Q9Y4K4 846 aa10.95□□□□□ -0.66
CCDC38-204ENST00000546816 NBPF14Q5TI25 921 aa10.94□□□□□ -0.66
CCDC38-204ENST00000546816 TRMT44Q8IYL2 757 aaKnown RBP10.94□□□□□ -0.66
CCDC38-204ENST00000546816 ZSCAN1Q8NBB4 408 aa10.93□□□□□ -0.66
CCDC38-204ENST00000546816 MEIOBQ8N635 442 aa10.92□□□□□ -0.66
CCDC38-204ENST00000546816 RSPH6AQ9H0K4 717 aa10.92□□□□□ -0.66
CCDC38-204ENST00000546816 VSIG8P0DPA2 414 aa10.91□□□□□ -0.66
CCDC38-204ENST00000546816 C6orf118Q5T5N4 469 aa10.91□□□□□ -0.66
CCDC38-204ENST00000546816 POLR3EQ9NVU0 708 aa10.91□□□□□ -0.66
CCDC38-204ENST00000546816 FSHRP23945 695 aa10.9□□□□□ -0.66
CCDC38-204ENST00000546816 LINC00528Q8N1L1 170 aa10.9□□□□□ -0.66
CCDC38-204ENST00000546816 GPKOWQ92917 476 aaPredicted RBP eCLIP10.9□□□□□ -0.66
CCDC38-204ENST00000546816 FAM181BA6NEQ2 426 aa10.89□□□□□ -0.67
CCDC38-204ENST00000546816 CTDSPL2Q05D32 466 aa10.89□□□□□ -0.67
CCDC38-204ENST00000546816 VASH1Q7L8A9 365 aaPredicted RBP10.89□□□□□ -0.67
CCDC38-204ENST00000546816 MAGEB6P1A0A0J9YX57 407 aa10.88□□□□□ -0.67
CCDC38-204ENST00000546816 MAN1A2O60476 641 aa10.88□□□□□ -0.67
CCDC38-204ENST00000546816 SOS2Q07890 1332 aaPredicted RBP10.87□□□□□ -0.67
CCDC38-204ENST00000546816 BMP2P12643 396 aa10.87□□□□□ -0.67
CCDC38-204ENST00000546816 ERFEQ4G0M1 354 aa10.87□□□□□ -0.67
CCDC38-204ENST00000546816 UPP2O95045 317 aa10.86□□□□□ -0.67
CCDC38-204ENST00000546816 FBXO31Q5XUX0 539 aaPredicted RBP10.86□□□□□ -0.67
CCDC38-204ENST00000546816 CCDC116Q8IYX3 515 aa10.86□□□□□ -0.67
CCDC38-204ENST00000546816 EMILIN1Q9Y6C2 1016 aa10.86□□□□□ -0.67
CCDC38-204ENST00000546816 CARD14Q9BXL6 1004 aa10.85□□□□□ -0.67
CCDC38-204ENST00000546816 PPFIA3O75145 1194 aa10.84□□□□□ -0.67
CCDC38-204ENST00000546816 PDXDC2PQ6P474 469 aa10.84□□□□□ -0.67
CCDC38-204ENST00000546816 LRRN4Q8WUT4 740 aa10.84□□□□□ -0.67
CCDC38-204ENST00000546816 DNMT3LQ9UJW3 386 aa10.84□□□□□ -0.67
CCDC38-204ENST00000546816 TSEN34Q9BSV6 310 aaKnown RBP10.83□□□□□ -0.68
CCDC38-204ENST00000546816 SKIV2LQ15477 1246 aaKnown RBP10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms