RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 MINK1Q8N4C8 1332 aaPredicted RBP12.83□□□□□ -0.36
SS18-205ENST00000542420 ARHGAP23Q9P227 1491 aa12.83□□□□□ -0.36
SS18-205ENST00000542420 FYB1O15117 783 aa12.83□□□□□ -0.36
SS18-205ENST00000542420 CDK12Q9NYV4 1490 aaPredicted RBP12.82□□□□□ -0.36
SS18-205ENST00000542420 TCP11L2Q8N4U5 519 aa12.82□□□□□ -0.36
SS18-205ENST00000542420 MYH16Q9H6N6 1097 aa12.82□□□□□ -0.36
SS18-205ENST00000542420 SENP3-EIF4A1A0A087X0R7 540 aa12.82□□□□□ -0.36
SS18-205ENST00000542420 NALCNQ8IZF0 1738 aa12.8□□□□□ -0.36
SS18-205ENST00000542420 ADAMTS13Q76LX8 1427 aa12.8□□□□□ -0.36
SS18-205ENST00000542420 WASLO00401 505 aaPredicted RBP12.8□□□□□ -0.36
SS18-205ENST00000542420 SPINK5Q9NQ38 1064 aaPredicted RBP12.79□□□□□ -0.36
SS18-205ENST00000542420 PLIN1O60240 522 aa12.79□□□□□ -0.36
SS18-205ENST00000542420 DEKP35659 375 aaKnown RBP12.79□□□□□ -0.36
SS18-205ENST00000542420 PLEKHF1Q96S99 279 aa12.79□□□□□ -0.36
SS18-205ENST00000542420 PPIP5K1Q6PFW1 1433 aa12.79□□□□□ -0.36
SS18-205ENST00000542420 METP08581 1390 aa12.78□□□□□ -0.36
SS18-205ENST00000542420 LRRC7Q96NW7 1537 aa12.78□□□□□ -0.36
SS18-205ENST00000542420 ZNF692Q9BU19 519 aaPredicted RBP12.78□□□□□ -0.36
SS18-205ENST00000542420 PTCH1Q13635 1447 aa12.78□□□□□ -0.36
SS18-205ENST00000542420 U2AF1L5P0DN76 240 aaPredicted RBP12.77□□□□□ -0.36
SS18-205ENST00000542420 ANP32AP39687 249 aaKnown RBP12.77□□□□□ -0.36
SS18-205ENST00000542420 U2AF1Q01081 240 aaKnown RBP eCLIP12.77□□□□□ -0.362e-6■■■■□ 21.7
SS18-205ENST00000542420 SAFB2Q14151 953 aaKnown RBP eCLIP12.77□□□□□ -0.36
SS18-205ENST00000542420 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.77□□□□□ -0.36
SS18-205ENST00000542420 USP54Q70EL1 1684 aa12.77□□□□□ -0.37
SS18-205ENST00000542420 CABP1Q9NZU7 370 aa12.77□□□□□ -0.37
SS18-205ENST00000542420 DIAPH1O60610 1272 aaKnown RBP12.76□□□□□ -0.37
SS18-205ENST00000542420 FCHSD2O94868 740 aa12.76□□□□□ -0.37
SS18-205ENST00000542420 KCNA4P22459 653 aa12.76□□□□□ -0.37
SS18-205ENST00000542420 XRN1Q8IZH2 1706 aaKnown RBP12.76□□□□□ -0.37
SS18-205ENST00000542420 C20orf194Q5TEA3 1177 aa12.76□□□□□ -0.37
SS18-205ENST00000542420 BACH2Q9BYV9 841 aa12.76□□□□□ -0.37
SS18-205ENST00000542420 GGNBP2Q9H3C7 697 aa12.76□□□□□ -0.37
SS18-205ENST00000542420 MAPK8IP3Q9UPT6 1336 aa12.75□□□□□ -0.37
SS18-205ENST00000542420 TNNT2P45379 298 aaPredicted RBP12.75□□□□□ -0.37
SS18-205ENST00000542420 RARSP54136 660 aaKnown RBP12.75□□□□□ -0.37
SS18-205ENST00000542420 CCDC61Q9Y6R9 512 aa12.75□□□□□ -0.37
SS18-205ENST00000542420 MLECQ14165 292 aa12.74□□□□□ -0.37
SS18-205ENST00000542420 ZNF428Q96B54 188 aa12.74□□□□□ -0.37
SS18-205ENST00000542420 TMPOP42166 694 aaKnown RBP12.74□□□□□ -0.37
SS18-205ENST00000542420 DMRT2Q9Y5R5 561 aa12.74□□□□□ -0.37
SS18-205ENST00000542420 ZNF142P52746 1687 aaPredicted RBP12.73□□□□□ -0.37
SS18-205ENST00000542420 PDE4AP27815 886 aa12.73□□□□□ -0.37
SS18-205ENST00000542420 CALD1Q05682 793 aaKnown RBP12.73□□□□□ -0.37
SS18-205ENST00000542420 WAPLQ7Z5K2 1190 aa12.73□□□□□ -0.37
SS18-205ENST00000542420 PIK3R4Q99570 1358 aa12.73□□□□□ -0.37
SS18-205ENST00000542420 DLG5Q8TDM6 1919 aa12.72□□□□□ -0.37
SS18-205ENST00000542420 NUDT16Q96DE0 195 aaKnown RBP12.72□□□□□ -0.37
SS18-205ENST00000542420 IPO9Q96P70 1041 aaKnown RBP12.72□□□□□ -0.37
SS18-205ENST00000542420 BCAR3O75815 825 aa12.72□□□□□ -0.37
SS18-205ENST00000542420 PLEKHG3A1L390 1219 aa12.71□□□□□ -0.37
SS18-205ENST00000542420 PMFBP1Q8TBY8 1022 aa12.71□□□□□ -0.37
SS18-205ENST00000542420 UBE2Q2Q8WVN8 375 aa12.71□□□□□ -0.37
SS18-205ENST00000542420 TBX22Q9Y458 520 aa12.71□□□□□ -0.37
SS18-205ENST00000542420 FMN2Q9NZ56 1722 aa12.71□□□□□ -0.37
SS18-205ENST00000542420 RGPD1P0DJD0 1748 aa12.71□□□□□ -0.38
SS18-205ENST00000542420 NEFMP07197 916 aa12.71□□□□□ -0.38
SS18-205ENST00000542420 BRPF1P55201 1214 aaPredicted RBP12.71□□□□□ -0.38
SS18-205ENST00000542420 CLUAP1Q96AJ1 413 aa12.71□□□□□ -0.38
SS18-205ENST00000542420 POLKQ9UBT6 870 aa12.71□□□□□ -0.38
SS18-205ENST00000542420 ROBO2Q9HCK4 1378 aa12.7□□□□□ -0.38
SS18-205ENST00000542420 EID1Q9Y6B2 187 aa12.7□□□□□ -0.38
SS18-205ENST00000542420 OVOS2A0A0J9YW53 1432 aa12.7□□□□□ -0.38
SS18-205ENST00000542420 OVOS2Q6IE36 1432 aa12.7□□□□□ -0.38
SS18-205ENST00000542420 TRIM35Q9UPQ4 493 aa12.7□□□□□ -0.38
SS18-205ENST00000542420 NOP58Q9Y2X3 529 aaKnown RBP12.7□□□□□ -0.38
SS18-205ENST00000542420 ANKARQ7Z5J8 1434 aa12.69□□□□□ -0.38
SS18-205ENST00000542420 CANXP27824 592 aaKnown RBP12.69□□□□□ -0.38
SS18-205ENST00000542420 RSPH6AQ9H0K4 717 aa12.69□□□□□ -0.38
SS18-205ENST00000542420 U2SURPO15042 1029 aaKnown RBP12.68□□□□□ -0.38
SS18-205ENST00000542420 ALDH1L2Q3SY69 923 aa12.68□□□□□ -0.38
SS18-205ENST00000542420 LMOD3Q0VAK6 560 aa12.68□□□□□ -0.38
SS18-205ENST00000542420 SSH2Q76I76 1423 aa12.68□□□□□ -0.38
SS18-205ENST00000542420 COG3Q96JB2 828 aa12.68□□□□□ -0.38
SS18-205ENST00000542420 RRP7AQ9Y3A4 280 aaKnown RBP12.68□□□□□ -0.38
SS18-205ENST00000542420 USP31Q70CQ4 1352 aa12.68□□□□□ -0.38
SS18-205ENST00000542420 CEP170BQ9Y4F5 1589 aaPredicted RBP12.67□□□□□ -0.38
SS18-205ENST00000542420 USP6P35125 1406 aa12.67□□□□□ -0.38
SS18-205ENST00000542420 TXNDC2Q86VQ3 553 aa12.67□□□□□ -0.38
SS18-205ENST00000542420 TTC21AQ8NDW8 1320 aa12.67□□□□□ -0.38
SS18-205ENST00000542420 ZKSCAN2Q63HK3 967 aa12.67□□□□□ -0.38
SS18-205ENST00000542420 DDRGK1Q96HY6 314 aa12.67□□□□□ -0.38
SS18-205ENST00000542420 KIF16BQ96L93 1317 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 PTPRUQ92729 1446 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 IL13P35225 146 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 NEUROD2Q15784 382 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 NFE2L2Q16236 605 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 FAM161AQ3B820 660 aa12.66□□□□□ -0.38
SS18-205ENST00000542420 THEMISQ8N1K5 641 aaPredicted RBP12.66□□□□□ -0.38
SS18-205ENST00000542420 CHD2O14647 1828 aaKnown RBP12.65□□□□□ -0.38
SS18-205ENST00000542420 RIPK4P57078 832 aa12.65□□□□□ -0.38
SS18-205ENST00000542420 PRR36Q9H6K5 1346 aa12.65□□□□□ -0.38
SS18-205ENST00000542420 KIF24Q5T7B8 1368 aa12.65□□□□□ -0.38
SS18-205ENST00000542420 IPO8O15397 1037 aaKnown RBP12.64□□□□□ -0.39
SS18-205ENST00000542420 LTKP29376 864 aa12.64□□□□□ -0.39
SS18-205ENST00000542420 MVPQ14764 893 aaKnown RBP12.64□□□□□ -0.39
SS18-205ENST00000542420 CHMP4BQ9H444 224 aaKnown RBP12.64□□□□□ -0.39
SS18-205ENST00000542420 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.63□□□□□ -0.39
SS18-205ENST00000542420 IFT57Q9NWB7 429 aa12.63□□□□□ -0.39
SS18-205ENST00000542420 TTC21BQ7Z4L5 1316 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms