RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MED14O60244 1454 aa19.09■□□□□ 0.65
CLIP1-216ENST00000541410 CPSF1Q10570 1443 aaKnown RBP19.07■□□□□ 0.64
CLIP1-216ENST00000541410 MAP2P11137 1827 aaKnown RBP19.07■□□□□ 0.64
CLIP1-216ENST00000541410 C20orf194Q5TEA3 1177 aa19.06■□□□□ 0.64
CLIP1-216ENST00000541410 TBX22Q9Y458 520 aa19.06■□□□□ 0.64
CLIP1-216ENST00000541410 CEP170BQ9Y4F5 1589 aaPredicted RBP19.05■□□□□ 0.64
CLIP1-216ENST00000541410 POLKQ9UBT6 870 aa19.05■□□□□ 0.64
CLIP1-216ENST00000541410 EMILIN1Q9Y6C2 1016 aa19.05■□□□□ 0.64
CLIP1-216ENST00000541410 RBM33Q96EV2 1170 aaKnown RBP19.04■□□□□ 0.64
CLIP1-216ENST00000541410 TRMT2AQ8IZ69 625 aaKnown RBP19.04■□□□□ 0.64
CLIP1-216ENST00000541410 PMFBP1Q8TBY8 1022 aa19.04■□□□□ 0.64
CLIP1-216ENST00000541410 EDC4Q6P2E9 1401 aaKnown RBP19.04■□□□□ 0.64
CLIP1-216ENST00000541410 COL3A1P02461 1466 aaPredicted RBP19.04■□□□□ 0.64
CLIP1-216ENST00000541410 CDC42BPGQ6DT37 1551 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 ITSN1Q15811 1721 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 IQSEC2Q5JU85 1478 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 ACEP12821 1306 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 E9PSI1 815 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 DIAPH1O60610 1272 aaKnown RBP19.03■□□□□ 0.64
CLIP1-216ENST00000541410 KCNA6P17658 529 aa19.03■□□□□ 0.64
CLIP1-216ENST00000541410 RRS1Q15050 365 aaKnown RBP19.03■□□□□ 0.64
CLIP1-216ENST00000541410 CRBNQ96SW2 442 aa19.01■□□□□ 0.63
CLIP1-216ENST00000541410 RGPD8O14715 1765 aaPredicted RBP19.01■□□□□ 0.63
CLIP1-216ENST00000541410 MON2Q7Z3U7 1717 aa19.01■□□□□ 0.63
CLIP1-216ENST00000541410 BCAR3O75815 825 aa19■□□□□ 0.63
CLIP1-216ENST00000541410 AKAP12Q02952 1782 aa19■□□□□ 0.63
CLIP1-216ENST00000541410 SOX12O15370 315 aa19■□□□□ 0.63
CLIP1-216ENST00000541410 COG3Q96JB2 828 aa19■□□□□ 0.63
CLIP1-216ENST00000541410 NKTRP30414 1462 aaKnown RBP19■□□□□ 0.63
CLIP1-216ENST00000541410 PLEKHF1Q96S99 279 aa18.99■□□□□ 0.63
CLIP1-216ENST00000541410 ADGRB2O60241 1585 aa18.98■□□□□ 0.63
CLIP1-216ENST00000541410 HMOX1P09601 288 aa18.98■□□□□ 0.63
CLIP1-216ENST00000541410 ZNF692Q9BU19 519 aaPredicted RBP18.97■□□□□ 0.63
CLIP1-216ENST00000541410 ADAMTSL3P82987 1691 aa18.97■□□□□ 0.63
CLIP1-216ENST00000541410 ANKLE2Q86XL3 938 aa18.97■□□□□ 0.63
CLIP1-216ENST00000541410 PNPLA6Q8IY17 1366 aa18.97■□□□□ 0.63
CLIP1-216ENST00000541410 MAPK8IP3Q9UPT6 1336 aa18.96■□□□□ 0.63
CLIP1-216ENST00000541410 NGEFQ8N5V2 710 aa18.96■□□□□ 0.63
CLIP1-216ENST00000541410 TTC21BQ7Z4L5 1316 aa18.95■□□□□ 0.62
CLIP1-216ENST00000541410 TMPOP42166 694 aaKnown RBP18.95■□□□□ 0.62
CLIP1-216ENST00000541410 PHF23Q9BUL5 403 aaPredicted RBP18.95■□□□□ 0.62
CLIP1-216ENST00000541410 RBM19Q9Y4C8 960 aaKnown RBP18.95■□□□□ 0.62
CLIP1-216ENST00000541410 TOPAZ1Q8N9V7 1692 aa18.94■□□□□ 0.62
CLIP1-216ENST00000541410 PTCH1Q13635 1447 aa18.94■□□□□ 0.62
CLIP1-216ENST00000541410 DIP2AQ14689 1571 aa18.93■□□□□ 0.62
CLIP1-216ENST00000541410 PLEKHG3A1L390 1219 aa18.93■□□□□ 0.62
CLIP1-216ENST00000541410 PRKAR2BP31323 418 aa18.93■□□□□ 0.62
CLIP1-216ENST00000541410 SETD1BQ9UPS6 1966 aaKnown RBP18.93■□□□□ 0.62
CLIP1-216ENST00000541410 NGDNQ8NEJ9 315 aaKnown RBP18.93■□□□□ 0.62
CLIP1-216ENST00000541410 XRN1Q8IZH2 1706 aaKnown RBP18.93■□□□□ 0.62
CLIP1-216ENST00000541410 TSR2Q969E8 191 aaKnown RBP18.92■□□□□ 0.62
CLIP1-216ENST00000541410 BCL2L13Q9BXK5 485 aa18.92■□□□□ 0.62
CLIP1-216ENST00000541410 RIPK4P57078 832 aa18.92■□□□□ 0.62
CLIP1-216ENST00000541410 TRIM35Q9UPQ4 493 aa18.92■□□□□ 0.62
CLIP1-216ENST00000541410 USP6P35125 1406 aa18.92■□□□□ 0.62
CLIP1-216ENST00000541410 WDR63Q8IWG1 891 aa18.91■□□□□ 0.62
CLIP1-216ENST00000541410 LRRC7Q96NW7 1537 aa18.9■□□□□ 0.62
CLIP1-216ENST00000541410 CCDC27Q2M243 656 aa18.9■□□□□ 0.62
CLIP1-216ENST00000541410 PHACTR3Q96KR7 559 aa18.9■□□□□ 0.62
CLIP1-216ENST00000541410 RSPH6AQ9H0K4 717 aa18.9■□□□□ 0.62
CLIP1-216ENST00000541410 IL13P35225 146 aa18.89■□□□□ 0.61
CLIP1-216ENST00000541410 NUTM2GQ5VZR2 741 aa18.89■□□□□ 0.61
CLIP1-216ENST00000541410 NRKQ7Z2Y5 1582 aa18.89■□□□□ 0.61
CLIP1-216ENST00000541410 FRAT1Q92837 279 aaPredicted RBP18.89■□□□□ 0.61
CLIP1-216ENST00000541410 SKAP1Q86WV1 359 aa18.88■□□□□ 0.61
CLIP1-216ENST00000541410 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.88■□□□□ 0.61
CLIP1-216ENST00000541410 FCHSD2O94868 740 aa18.88■□□□□ 0.61
CLIP1-216ENST00000541410 ZNF142P52746 1687 aaPredicted RBP18.88■□□□□ 0.61
CLIP1-216ENST00000541410 AATKQ6ZMQ8 1374 aa18.87■□□□□ 0.61
CLIP1-216ENST00000541410 CHD2O14647 1828 aaKnown RBP18.86■□□□□ 0.61
CLIP1-216ENST00000541410 CANXP27824 592 aaKnown RBP18.86■□□□□ 0.61
CLIP1-216ENST00000541410 THUMPD2Q9BTF0 503 aaKnown RBP18.86■□□□□ 0.61
CLIP1-216ENST00000541410 CDK12Q9NYV4 1490 aaPredicted RBP18.86■□□□□ 0.61
CLIP1-216ENST00000541410 MYH16Q9H6N6 1097 aa18.85■□□□□ 0.61
CLIP1-216ENST00000541410 FANCIQ9NVI1 1328 aa18.85■□□□□ 0.61
CLIP1-216ENST00000541410 RARSP54136 660 aaKnown RBP18.84■□□□□ 0.61
CLIP1-216ENST00000541410 HSP90AB2PQ58FF8 381 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 TNNQ9UQP3 1299 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 OVOS2A0A0J9YW53 1432 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 OVOS2Q6IE36 1432 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 NEFMP07197 916 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 PANK1Q8TE04 598 aa18.84■□□□□ 0.61
CLIP1-216ENST00000541410 LAS1LQ9Y4W2 734 aaKnown RBP18.84■□□□□ 0.61
CLIP1-216ENST00000541410 PAK3O75914 559 aaPredicted RBP18.83■□□□□ 0.61
CLIP1-216ENST00000541410 AEBP1Q8IUX7 1158 aa18.83■□□□□ 0.61
CLIP1-216ENST00000541410 NALCNQ8IZF0 1738 aa18.83■□□□□ 0.6
CLIP1-216ENST00000541410 EXOSC9Q06265 439 aaKnown RBP18.83■□□□□ 0.6
CLIP1-216ENST00000541410 C14orf37Q86TY3 774 aa18.83■□□□□ 0.6
CLIP1-216ENST00000541410 PNNQ9H307 717 aaKnown RBP18.83■□□□□ 0.6
CLIP1-216ENST00000541410 PIK3R4Q99570 1358 aa18.83■□□□□ 0.6
CLIP1-216ENST00000541410 SSH2Q76I76 1423 aa18.82■□□□□ 0.6
CLIP1-216ENST00000541410 EIF4A2Q14240 407 aaKnown RBP18.82■□□□□ 0.6
CLIP1-216ENST00000541410 PLEKHG5O94827 1062 aa18.81■□□□□ 0.6
CLIP1-216ENST00000541410 NLRP6P59044 892 aa18.81■□□□□ 0.6
CLIP1-216ENST00000541410 COG6Q9Y2V7 657 aa18.81■□□□□ 0.6
CLIP1-216ENST00000541410 PEAK1Q9H792 1746 aa18.8■□□□□ 0.6
CLIP1-216ENST00000541410 FMN2Q9NZ56 1722 aa18.8■□□□□ 0.6
CLIP1-216ENST00000541410 NPHP4O75161 1426 aaPredicted RBP18.8■□□□□ 0.6
CLIP1-216ENST00000541410 CLUAP1Q96AJ1 413 aa18.8■□□□□ 0.6
CLIP1-216ENST00000541410 SULT6B1Q6IMI4 303 aa18.79■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms