RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 ACEP12821 1306 aa16.38■□□□□ 0.21
AP003559.1-201ENST00000540906 PLEKHG3A1L390 1219 aa16.37■□□□□ 0.21
AP003559.1-201ENST00000540906 FKBP8Q14318 412 aa16.37■□□□□ 0.21
AP003559.1-201ENST00000540906 CDCA7LQ96GN5 454 aa16.37■□□□□ 0.21
AP003559.1-201ENST00000540906 NUDCQ9Y266 331 aa16.37■□□□□ 0.21
AP003559.1-201ENST00000540906 PMFBP1Q8TBY8 1022 aa16.35■□□□□ 0.21
AP003559.1-201ENST00000540906 NWD1Q149M9 1564 aa16.34■□□□□ 0.21
AP003559.1-201ENST00000540906 USP6P35125 1406 aa16.34■□□□□ 0.21
AP003559.1-201ENST00000540906 IRX6P78412 446 aaPredicted RBP16.33■□□□□ 0.21
AP003559.1-201ENST00000540906 SSH2Q76I76 1423 aa16.33■□□□□ 0.21
AP003559.1-201ENST00000540906 TTC21BQ7Z4L5 1316 aa16.33■□□□□ 0.2
AP003559.1-201ENST00000540906 MAP2P11137 1827 aaKnown RBP16.33■□□□□ 0.2
AP003559.1-201ENST00000540906 APAF1O14727 1248 aa16.32■□□□□ 0.2
AP003559.1-201ENST00000540906 ZNF521Q96K83 1311 aa16.32■□□□□ 0.2
AP003559.1-201ENST00000540906 STRCP1A6NGW2 1772 aa16.31■□□□□ 0.2
AP003559.1-201ENST00000540906 ZNF692Q9BU19 519 aaPredicted RBP16.31■□□□□ 0.2
AP003559.1-201ENST00000540906 POLKQ9UBT6 870 aa16.31■□□□□ 0.2
AP003559.1-201ENST00000540906 ANKARQ7Z5J8 1434 aa16.31■□□□□ 0.2
AP003559.1-201ENST00000540906 CFAP53Q96M91 514 aa16.31■□□□□ 0.2
AP003559.1-201ENST00000540906 ADGRL3Q9HAR2 1447 aa16.3■□□□□ 0.2
AP003559.1-201ENST00000540906 IQSEC2Q5JU85 1478 aa16.3■□□□□ 0.2
AP003559.1-201ENST00000540906 EMILIN1Q9Y6C2 1016 aa16.3■□□□□ 0.2
AP003559.1-201ENST00000540906 PNPLA6Q8IY17 1366 aa16.29■□□□□ 0.2
AP003559.1-201ENST00000540906 DMRT2Q9Y5R5 561 aa16.29■□□□□ 0.2
AP003559.1-201ENST00000540906 OVOS2A0A0J9YW53 1432 aa16.28■□□□□ 0.2
AP003559.1-201ENST00000540906 OVOS2Q6IE36 1432 aa16.28■□□□□ 0.2
AP003559.1-201ENST00000540906 PIK3C2AO00443 1686 aa16.27■□□□□ 0.2
AP003559.1-201ENST00000540906 COG3Q96JB2 828 aa16.27■□□□□ 0.2
AP003559.1-201ENST00000540906 PDE3BQ13370 1112 aa16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 RRS1Q15050 365 aaKnown RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 SPINK5Q9NQ38 1064 aaPredicted RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 PPM1GO15355 546 aaPredicted RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 NEFLP07196 543 aa16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 U2AF1L5P0DN76 240 aaPredicted RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 U2AF1Q01081 240 aaKnown RBP eCLIP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 NGDNQ8NEJ9 315 aaKnown RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 RRP7AQ9Y3A4 280 aaKnown RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 MARF1Q9Y4F3 1742 aaKnown RBP16.26■□□□□ 0.19
AP003559.1-201ENST00000540906 AATKQ6ZMQ8 1374 aa16.25■□□□□ 0.19
AP003559.1-201ENST00000540906 STRCQ7RTU9 1775 aa16.25■□□□□ 0.19
AP003559.1-201ENST00000540906 PEAK1Q9H792 1746 aa16.25■□□□□ 0.19
AP003559.1-201ENST00000540906 U2SURPO15042 1029 aaKnown RBP16.24■□□□□ 0.19
AP003559.1-201ENST00000540906 RUNDC1Q96C34 613 aa16.24■□□□□ 0.19
AP003559.1-201ENST00000540906 RNF123Q5XPI4 1314 aa16.24■□□□□ 0.19
AP003559.1-201ENST00000540906 DIAPH1O60610 1272 aaKnown RBP16.23■□□□□ 0.19
AP003559.1-201ENST00000540906 PROSER2Q86WR7 435 aaPredicted RBP16.23■□□□□ 0.19
AP003559.1-201ENST00000540906 TCP11L2Q8N4U5 519 aa16.23■□□□□ 0.19
AP003559.1-201ENST00000540906 PLEKHF1Q96S99 279 aa16.23■□□□□ 0.19
AP003559.1-201ENST00000540906 CDK12Q9NYV4 1490 aaPredicted RBP16.23■□□□□ 0.19
AP003559.1-201ENST00000540906 DUSP27Q5VZP5 1158 aa16.22■□□□□ 0.19
AP003559.1-201ENST00000540906 PHF8Q9UPP1 1060 aa16.22■□□□□ 0.19
AP003559.1-201ENST00000540906 USP31Q70CQ4 1352 aa16.22■□□□□ 0.19
AP003559.1-201ENST00000540906 NEUROD2Q15784 382 aa16.21■□□□□ 0.19
AP003559.1-201ENST00000540906 C14orf37Q86TY3 774 aa16.21■□□□□ 0.19
AP003559.1-201ENST00000540906 LRRC7Q96NW7 1537 aa16.2■□□□□ 0.18
AP003559.1-201ENST00000540906 TTC21AQ8NDW8 1320 aa16.2■□□□□ 0.18
AP003559.1-201ENST00000540906 SOX12O15370 315 aa16.2■□□□□ 0.18
AP003559.1-201ENST00000540906 IL13P35225 146 aa16.2■□□□□ 0.18
AP003559.1-201ENST00000540906 SLFN5Q08AF3 891 aa16.2■□□□□ 0.18
AP003559.1-201ENST00000540906 GOLGA2Q08379 1002 aa16.19■□□□□ 0.18
AP003559.1-201ENST00000540906 NUTM2GQ5VZR2 741 aa16.19■□□□□ 0.18
AP003559.1-201ENST00000540906 WWC1Q8IX03 1113 aa16.19■□□□□ 0.18
AP003559.1-201ENST00000540906 ORAI2Q96SN7 254 aa16.19■□□□□ 0.18
AP003559.1-201ENST00000540906 TRMT2AQ8IZ69 625 aaKnown RBP16.19■□□□□ 0.18
AP003559.1-201ENST00000540906 TMEM94Q12767 1356 aa16.18■□□□□ 0.18
AP003559.1-201ENST00000540906 ESCO1Q5FWF5 840 aa16.18■□□□□ 0.18
AP003559.1-201ENST00000540906 RCAN3Q9UKA8 241 aa16.18■□□□□ 0.18
AP003559.1-201ENST00000540906 USP54Q70EL1 1684 aa16.18■□□□□ 0.18
AP003559.1-201ENST00000540906 ZNF335Q9H4Z2 1342 aaPredicted RBP16.17■□□□□ 0.18
AP003559.1-201ENST00000540906 RSPH6AQ9H0K4 717 aa16.17■□□□□ 0.18
AP003559.1-201ENST00000540906 XIRP1Q702N8 1843 aaKnown RBP16.17■□□□□ 0.18
AP003559.1-201ENST00000540906 HMOX1P09601 288 aa16.16■□□□□ 0.18
AP003559.1-201ENST00000540906 C1orf167Q5SNV9 1468 aa16.15■□□□□ 0.18
AP003559.1-201ENST00000540906 MAP3K19Q56UN5 1328 aa16.15■□□□□ 0.18
AP003559.1-201ENST00000540906 NLRP6P59044 892 aa16.15■□□□□ 0.18
AP003559.1-201ENST00000540906 XPCQ01831 940 aaPredicted RBP16.15■□□□□ 0.18
AP003559.1-201ENST00000540906 PAK3O75914 559 aaPredicted RBP16.14■□□□□ 0.17
AP003559.1-201ENST00000540906 TMPOP42166 694 aaKnown RBP16.14■□□□□ 0.17
AP003559.1-201ENST00000540906 RRP1P56182 461 aaKnown RBP16.14■□□□□ 0.17
AP003559.1-201ENST00000540906 EIF4A2Q14240 407 aaKnown RBP16.14■□□□□ 0.17
AP003559.1-201ENST00000540906 HSP90AB2PQ58FF8 381 aa16.14■□□□□ 0.17
AP003559.1-201ENST00000540906 PRKAR2BP31323 418 aa16.13■□□□□ 0.17
AP003559.1-201ENST00000540906 PHACTR3Q96KR7 559 aa16.13■□□□□ 0.17
AP003559.1-201ENST00000540906 C19orf44Q9H6X5 657 aa16.13■□□□□ 0.17
AP003559.1-201ENST00000540906 TRIM35Q9UPQ4 493 aa16.13■□□□□ 0.17
AP003559.1-201ENST00000540906 MST1RQ04912 1400 aa16.13■□□□□ 0.17
AP003559.1-201ENST00000540906 NGEFQ8N5V2 710 aa16.12■□□□□ 0.17
AP003559.1-201ENST00000540906 RGPD1P0DJD0 1748 aa16.12■□□□□ 0.17
AP003559.1-201ENST00000540906 FOXO3O43524 673 aa16.12■□□□□ 0.17
AP003559.1-201ENST00000540906 ABTB2Q8N961 1025 aa16.12■□□□□ 0.17
AP003559.1-201ENST00000540906 TRPM3Q9HCF6 1732 aaPredicted RBP16.12■□□□□ 0.17
AP003559.1-201ENST00000540906 E9PSI1 815 aa16.11■□□□□ 0.17
AP003559.1-201ENST00000540906 PLIN1O60240 522 aa16.11■□□□□ 0.17
AP003559.1-201ENST00000540906 CCDC27Q2M243 656 aa16.11■□□□□ 0.17
AP003559.1-201ENST00000540906 AEBP1Q8IUX7 1158 aa16.11■□□□□ 0.17
AP003559.1-201ENST00000540906 FCHSD2O94868 740 aa16.1■□□□□ 0.17
AP003559.1-201ENST00000540906 PSME1Q06323 249 aa16.1■□□□□ 0.17
AP003559.1-201ENST00000540906 DDX17Q92841 729 aaKnown RBP16.1■□□□□ 0.17
AP003559.1-201ENST00000540906 MAPK8IP3Q9UPT6 1336 aa16.09■□□□□ 0.17
AP003559.1-201ENST00000540906 KIF1AQ12756 1690 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms