RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 PRR7Q8TB68 274 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 TRIM47Q96LD4 638 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 BEGAINQ9BUH8 593 aa8.97□□□□□ -0.97
PRKDC-209ENST00000540819 SNRPBP14678 240 aaKnown RBP8.96□□□□□ -0.98
PRKDC-209ENST00000540819 SIAH2O43255 324 aa8.95□□□□□ -0.98
PRKDC-209ENST00000540819 SH3BP2P78314 561 aa8.95□□□□□ -0.98
PRKDC-209ENST00000540819 KCNH2Q12809 1159 aa8.95□□□□□ -0.98
PRKDC-209ENST00000540819 LCE2AQ5TA79 106 aaPredicted RBP8.95□□□□□ -0.98
PRKDC-209ENST00000540819 UNC93B1Q9H1C4 597 aa8.95□□□□□ -0.98
PRKDC-209ENST00000540819 BAP1Q92560 729 aa8.94□□□□□ -0.98
PRKDC-209ENST00000540819 PLEKHG3A1L390 1219 aa8.93□□□□□ -0.98
PRKDC-209ENST00000540819 CAPN5O15484 640 aaPredicted RBP8.93□□□□□ -0.98
PRKDC-209ENST00000540819 LINC01559Q495D7 138 aa8.93□□□□□ -0.98
PRKDC-209ENST00000540819 DESI1Q6ICB0 168 aa8.93□□□□□ -0.98
PRKDC-209ENST00000540819 TBC1D2Q9BYX2 928 aa8.93□□□□□ -0.98
PRKDC-209ENST00000540819 APBB1O00213 710 aa8.92□□□□□ -0.98
PRKDC-209ENST00000540819 TERTO14746 1132 aaKnown RBP8.92□□□□□ -0.98
PRKDC-209ENST00000540819 CTHP32929 405 aa8.92□□□□□ -0.98
PRKDC-209ENST00000540819 GJA5P36382 358 aa8.92□□□□□ -0.98
PRKDC-209ENST00000540819 NFX1Q12986 1120 aaKnown RBP8.92□□□□□ -0.98
PRKDC-209ENST00000540819 IL27Q8NEV9 243 aa8.92□□□□□ -0.98
PRKDC-209ENST00000540819 VARSP26640 1264 aaKnown RBP8.91□□□□□ -0.98
PRKDC-209ENST00000540819 AK7Q96M32 723 aa8.91□□□□□ -0.98
PRKDC-209ENST00000540819 GPBP1L1Q9HC44 474 aaPredicted RBP8.91□□□□□ -0.98
PRKDC-209ENST00000540819 INSM1Q01101 510 aaPredicted RBP8.9□□□□□ -0.98
PRKDC-209ENST00000540819 ARID3CA6NKF2 412 aa8.89□□□□□ -0.99
PRKDC-209ENST00000540819 RSBN1LQ6PCB5 846 aaPredicted RBP8.89□□□□□ -0.99
PRKDC-209ENST00000540819 ZNF511Q8NB15 262 aa8.89□□□□□ -0.99
PRKDC-209ENST00000540819 SLC16A10Q8TF71 515 aa8.89□□□□□ -0.99
PRKDC-209ENST00000540819 TRIM66O15016 1216 aa8.88□□□□□ -0.99
PRKDC-209ENST00000540819 LYPD8Q6UX82 237 aa8.88□□□□□ -0.99
PRKDC-209ENST00000540819 PARP9Q8IXQ6 854 aa8.88□□□□□ -0.99
PRKDC-209ENST00000540819 ZBTB3Q9H5J0 574 aa8.88□□□□□ -0.99
PRKDC-209ENST00000540819 PCDHB15Q9Y5E8 787 aa8.88□□□□□ -0.99
PRKDC-209ENST00000540819 SPTLC1O15269 473 aa8.87□□□□□ -0.99
PRKDC-209ENST00000540819 RIC3Q7Z5B4 369 aa8.87□□□□□ -0.99
PRKDC-209ENST00000540819 KDM4CQ9H3R0 1056 aa8.87□□□□□ -0.99
PRKDC-209ENST00000540819 WIPF1O43516 503 aa8.86□□□□□ -0.99
PRKDC-209ENST00000540819 BMP1P13497 986 aa8.86□□□□□ -0.99
PRKDC-209ENST00000540819 FAM174AQ8TBP5 190 aa8.86□□□□□ -0.99
PRKDC-209ENST00000540819 FLIIQ13045 1269 aa8.85□□□□□ -0.99
PRKDC-209ENST00000540819 CSPP1Q1MSJ5 1256 aa8.85□□□□□ -0.99
PRKDC-209ENST00000540819 PRPF38BQ5VTL8 546 aaKnown RBP8.85□□□□□ -0.99
PRKDC-209ENST00000540819 MPNDQ8N594 471 aa8.85□□□□□ -0.99
PRKDC-209ENST00000540819 TLL2Q9Y6L7 1015 aa8.85□□□□□ -0.99
PRKDC-209ENST00000540819 NNTQ13423 1086 aa8.84□□□□□ -0.99
PRKDC-209ENST00000540819 AGERQ15109 404 aa8.84□□□□□ -0.99
PRKDC-209ENST00000540819 TRIM46Q7Z4K8 759 aa8.84□□□□□ -0.99
PRKDC-209ENST00000540819 NXF1Q9UBU9 619 aaKnown RBP8.84□□□□□ -0.99
PRKDC-209ENST00000540819 STK17AQ9UEE5 414 aa8.84□□□□□ -0.99
PRKDC-209ENST00000540819 NUTM2BA6NNL0 878 aaPredicted RBP8.83□□□□□ -1
PRKDC-209ENST00000540819 NUTM2EB1AL46 878 aaPredicted RBP8.83□□□□□ -1
PRKDC-209ENST00000540819 CFAP99D6REC4 459 aa8.83□□□□□ -1
PRKDC-209ENST00000540819 ARID5BQ14865 1188 aa8.83□□□□□ -1
PRKDC-209ENST00000540819 NUTM2DQ5VT03 806 aaPredicted RBP8.83□□□□□ -1
PRKDC-209ENST00000540819 NUTM2AQ8IVF1 878 aaPredicted RBP8.83□□□□□ -1
PRKDC-209ENST00000540819 TSC1Q92574 1164 aa8.83□□□□□ -1
PRKDC-209ENST00000540819 SCARF1Q14162 830 aa8.82□□□□□ -1
PRKDC-209ENST00000540819 KCTD17Q8N5Z5 321 aa8.82□□□□□ -1
PRKDC-209ENST00000540819 WDR4P57081 412 aaKnown RBP8.81□□□□□ -1
PRKDC-209ENST00000540819 CABLES1Q8TDN4 633 aa8.81□□□□□ -1
PRKDC-209ENST00000540819 ZFP42Q96MM3 310 aa8.81□□□□□ -1
PRKDC-209ENST00000540819 ADH1CP00326 375 aa8.8□□□□□ -1
PRKDC-209ENST00000540819 NPAS3Q8IXF0 933 aa8.8□□□□□ -1
PRKDC-209ENST00000540819 TRAIPQ9BWF2 469 aa8.8□□□□□ -1
PRKDC-209ENST00000540819 MAP10Q9P2G4 905 aa8.8□□□□□ -1
PRKDC-209ENST00000540819 SHROOM4Q9ULL8 1493 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 LOC105371045A0A1W2PR82 267 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 PDE4DQ08499 809 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 MRPL14Q6P1L8 145 aaKnown RBP8.79□□□□□ -1
PRKDC-209ENST00000540819 BPHLQ86WA6 291 aaPredicted RBP8.79□□□□□ -1
PRKDC-209ENST00000540819 CCDC82Q8N4S0 544 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 ARMC2Q8NEN0 867 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 FOXJ1Q92949 421 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 IRF7Q92985 503 aa8.79□□□□□ -1
PRKDC-209ENST00000540819 F12P00748 615 aaPredicted RBP8.78□□□□□ -1
PRKDC-209ENST00000540819 FAM181BA6NEQ2 426 aa8.77□□□□□ -1.01
PRKDC-209ENST00000540819 A6NJR5 290 aa8.77□□□□□ -1.01
PRKDC-209ENST00000540819 CDK15Q96Q40 435 aa8.77□□□□□ -1.01
PRKDC-209ENST00000540819 RAD21O60216 631 aa8.76□□□□□ -1.01
PRKDC-209ENST00000540819 TIMP2P16035 220 aa8.76□□□□□ -1.01
PRKDC-209ENST00000540819 NR5A1Q13285 461 aa8.76□□□□□ -1.01
PRKDC-209ENST00000540819 MYSM1Q5VVJ2 828 aa8.76□□□□□ -1.01
PRKDC-209ENST00000540819 HELBQ8NG08 1087 aaPredicted RBP8.76□□□□□ -1.01
PRKDC-209ENST00000540819 PURBQ96QR8 312 aaKnown RBP8.76□□□□□ -1.01
PRKDC-209ENST00000540819 LIMD1Q9UGP4 676 aa8.76□□□□□ -1.01
PRKDC-209ENST00000540819 PER1O15534 1290 aaPredicted RBP8.75□□□□□ -1.01
PRKDC-209ENST00000540819 VEGFBP49765 207 aa8.75□□□□□ -1.01
PRKDC-209ENST00000540819 TUSC1Q2TAM9 212 aa8.75□□□□□ -1.01
PRKDC-209ENST00000540819 LCE2CQ5TA81 110 aa8.75□□□□□ -1.01
PRKDC-209ENST00000540819 LILRB3O75022 631 aa8.74□□□□□ -1.01
PRKDC-209ENST00000540819 UPP2O95045 317 aa8.74□□□□□ -1.01
PRKDC-209ENST00000540819 ZIC2O95409 532 aaPredicted RBP8.74□□□□□ -1.01
PRKDC-209ENST00000540819 QPCTQ16769 361 aa8.74□□□□□ -1.01
PRKDC-209ENST00000540819 TRAK2O60296 914 aa8.73□□□□□ -1.01
PRKDC-209ENST00000540819 GMPRP36959 345 aa8.73□□□□□ -1.01
PRKDC-209ENST00000540819 NBPF14Q5TI25 921 aa8.73□□□□□ -1.01
PRKDC-209ENST00000540819 KLF16Q9BXK1 252 aaPredicted RBP8.73□□□□□ -1.01
PRKDC-209ENST00000540819 H3BM21 787 aa8.72□□□□□ -1.01
PRKDC-209ENST00000540819 RGS22Q8NE09 1264 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms