RNA–Protein interactions for RNA: ENST00000539534.5

LMO3-221, Transcript of LIM domain only 3, humanhuman

TSL 4

Gene LMO3, Length 543 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-221ENST00000539534 PXDNQ92626 1479 aa17■□□□□ 0.31
LMO3-221ENST00000539534 CGNL1Q0VF96 1302 aa16.99■□□□□ 0.31
LMO3-221ENST00000539534 AHDC1Q5TGY3 1603 aaPredicted RBP16.99■□□□□ 0.31
LMO3-221ENST00000539534 TTC21AQ8NDW8 1320 aa16.98■□□□□ 0.31
LMO3-221ENST00000539534 ROBO1Q9Y6N7 1651 aa16.98■□□□□ 0.31
LMO3-221ENST00000539534 XPCQ01831 940 aaPredicted RBP16.98■□□□□ 0.31
LMO3-221ENST00000539534 AMER1Q5JTC6 1135 aaPredicted RBP16.98■□□□□ 0.31
LMO3-221ENST00000539534 NRKQ7Z2Y5 1582 aa16.98■□□□□ 0.31
LMO3-221ENST00000539534 NSD3Q9BZ95 1437 aa16.97■□□□□ 0.31
LMO3-221ENST00000539534 ANP32CO43423 234 aa16.97■□□□□ 0.31
LMO3-221ENST00000539534 SPATA31A3Q5VYP0 1347 aa16.96■□□□□ 0.31
LMO3-221ENST00000539534 FYB1O15117 783 aa16.96■□□□□ 0.31
LMO3-221ENST00000539534 RALBP1Q15311 655 aa16.96■□□□□ 0.31
LMO3-221ENST00000539534 ANKRD26Q9UPS8 1709 aa16.96■□□□□ 0.3
LMO3-221ENST00000539534 SCAF1Q9H7N4 1312 aaKnown RBP16.96■□□□□ 0.3
LMO3-221ENST00000539534 FBXO41Q8TF61 875 aa16.95■□□□□ 0.3
LMO3-221ENST00000539534 LRRC59Q96AG4 307 aaKnown RBP16.95■□□□□ 0.3
LMO3-221ENST00000539534 KIF20BQ96Q89 1820 aa16.95■□□□□ 0.3
LMO3-221ENST00000539534 NHSL1Q5SYE7 1610 aa16.95■□□□□ 0.3
LMO3-221ENST00000539534 USP31Q70CQ4 1352 aa16.94■□□□□ 0.3
LMO3-221ENST00000539534 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.94■□□□□ 0.3
LMO3-221ENST00000539534 USP54Q70EL1 1684 aa16.94■□□□□ 0.3
LMO3-221ENST00000539534 PAK3O75914 559 aaPredicted RBP16.92■□□□□ 0.3
LMO3-221ENST00000539534 NME9Q86XW9 330 aa16.92■□□□□ 0.3
LMO3-221ENST00000539534 ABTB2Q8N961 1025 aa16.92■□□□□ 0.3
LMO3-221ENST00000539534 TNS3Q68CZ2 1445 aa16.92■□□□□ 0.3
LMO3-221ENST00000539534 ARHGEF10O15013 1369 aa16.91■□□□□ 0.3
LMO3-221ENST00000539534 PARD3Q8TEW0 1356 aa16.91■□□□□ 0.3
LMO3-221ENST00000539534 HSPA1LP34931 641 aa16.91■□□□□ 0.3
LMO3-221ENST00000539534 TRPM3Q9HCF6 1732 aaPredicted RBP16.9■□□□□ 0.3
LMO3-221ENST00000539534 PRKRIP1Q9H875 184 aaPredicted RBP16.9■□□□□ 0.3
LMO3-221ENST00000539534 ZRANB1Q9UGI0 708 aa16.9■□□□□ 0.3
LMO3-221ENST00000539534 NLRP13Q86W25 1043 aa16.89■□□□□ 0.29
LMO3-221ENST00000539534 USP19O94966 1318 aa16.89■□□□□ 0.29
LMO3-221ENST00000539534 COL16A1Q07092 1604 aaPredicted RBP16.88■□□□□ 0.29
LMO3-221ENST00000539534 NLRP6P59044 892 aa16.88■□□□□ 0.29
LMO3-221ENST00000539534 GGNBP2Q9H3C7 697 aa16.88■□□□□ 0.29
LMO3-221ENST00000539534 OVOS2A0A0J9YW53 1432 aa16.87■□□□□ 0.29
LMO3-221ENST00000539534 OVOS2Q6IE36 1432 aa16.87■□□□□ 0.29
LMO3-221ENST00000539534 CCER2I3L3R5 266 aa16.87■□□□□ 0.29
LMO3-221ENST00000539534 COG3Q96JB2 828 aa16.87■□□□□ 0.29
LMO3-221ENST00000539534 PNPLA6Q8IY17 1366 aa16.87■□□□□ 0.29
LMO3-221ENST00000539534 NUTM2GQ5VZR2 741 aa16.86■□□□□ 0.29
LMO3-221ENST00000539534 ALS2Q96Q42 1657 aa16.85■□□□□ 0.29
LMO3-221ENST00000539534 CC2D1BQ5T0F9 858 aaKnown RBP16.85■□□□□ 0.29
LMO3-221ENST00000539534 LMOD2Q6P5Q4 547 aa16.85■□□□□ 0.29
LMO3-221ENST00000539534 MYBBP1AQ9BQG0 1328 aaKnown RBP16.85■□□□□ 0.29
LMO3-221ENST00000539534 JCADQ9P266 1359 aa16.85■□□□□ 0.29
LMO3-221ENST00000539534 PIK3C2AO00443 1686 aa16.84■□□□□ 0.29
LMO3-221ENST00000539534 PHLPP1O60346 1717 aa16.84■□□□□ 0.29
LMO3-221ENST00000539534 GCP02774 474 aa16.83■□□□□ 0.28
LMO3-221ENST00000539534 AATKQ6ZMQ8 1374 aa16.83■□□□□ 0.28
LMO3-221ENST00000539534 MORC1Q86VD1 984 aa16.83■□□□□ 0.28
LMO3-221ENST00000539534 MED1Q15648 1581 aaPredicted RBP16.82■□□□□ 0.28
LMO3-221ENST00000539534 KCNH5Q8NCM2 988 aa16.82■□□□□ 0.28
LMO3-221ENST00000539534 CABLES1Q8TDN4 633 aa16.81■□□□□ 0.28
LMO3-221ENST00000539534 SLIT3O75094 1523 aa16.8■□□□□ 0.28
LMO3-221ENST00000539534 KIF24Q5T7B8 1368 aa16.8■□□□□ 0.28
LMO3-221ENST00000539534 SPATA31A6Q5VVP1 1343 aa16.79■□□□□ 0.28
LMO3-221ENST00000539534 COL22A1Q8NFW1 1626 aaPredicted RBP16.79■□□□□ 0.28
LMO3-221ENST00000539534 FBLN1P23142 703 aa16.78■□□□□ 0.28
LMO3-221ENST00000539534 ARHGEF25Q86VW2 580 aa16.78■□□□□ 0.28
LMO3-221ENST00000539534 SMG6Q86US8 1419 aaKnown RBP16.78■□□□□ 0.28
LMO3-221ENST00000539534 CPDO75976 1380 aa16.77■□□□□ 0.28
LMO3-221ENST00000539534 ADRA2BP18089 450 aa16.77■□□□□ 0.28
LMO3-221ENST00000539534 POLKQ9UBT6 870 aa16.77■□□□□ 0.28
LMO3-221ENST00000539534 MARF1Q9Y4F3 1742 aaKnown RBP16.76■□□□□ 0.27
LMO3-221ENST00000539534 NFAT5O94916 1531 aa16.76■□□□□ 0.27
LMO3-221ENST00000539534 PPP2R1AP30153 589 aa16.76■□□□□ 0.27
LMO3-221ENST00000539534 MIER1Q8N108 512 aa16.76■□□□□ 0.27
LMO3-221ENST00000539534 PHRF1Q9P1Y6 1649 aaKnown RBP16.76■□□□□ 0.27
LMO3-221ENST00000539534 ABCC6O95255 1503 aa16.75■□□□□ 0.27
LMO3-221ENST00000539534 INSRP06213 1382 aa16.75■□□□□ 0.27
LMO3-221ENST00000539534 SHPRHQ149N8 1683 aa16.75■□□□□ 0.27
LMO3-221ENST00000539534 MAP3K19Q56UN5 1328 aa16.74■□□□□ 0.27
LMO3-221ENST00000539534 TNNT2P45379 298 aaPredicted RBP16.74■□□□□ 0.27
LMO3-221ENST00000539534 CNGB1Q14028 1251 aaPredicted RBP16.74■□□□□ 0.27
LMO3-221ENST00000539534 MAP2P11137 1827 aaKnown RBP16.73■□□□□ 0.27
LMO3-221ENST00000539534 ZC3H6P61129 1189 aaKnown RBP16.73■□□□□ 0.27
LMO3-221ENST00000539534 RRS1Q15050 365 aaKnown RBP16.73■□□□□ 0.27
LMO3-221ENST00000539534 RTL1A6NKG5 1358 aa16.73■□□□□ 0.27
LMO3-221ENST00000539534 CRYBG1Q9Y4K1 1723 aa16.73■□□□□ 0.27
LMO3-221ENST00000539534 CDK12Q9NYV4 1490 aaPredicted RBP16.73■□□□□ 0.27
LMO3-221ENST00000539534 FAM83GA6ND36 823 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 SOX12O15370 315 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 MTHFSP49914 203 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 CFAP53Q96M91 514 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 EMILIN1Q9Y6C2 1016 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 KIAA0232Q92628 1395 aa16.72■□□□□ 0.27
LMO3-221ENST00000539534 PLEKHG5O94827 1062 aa16.71■□□□□ 0.27
LMO3-221ENST00000539534 HAP1P54257 671 aaPredicted RBP16.71■□□□□ 0.27
LMO3-221ENST00000539534 IP6K1Q92551 441 aa16.71■□□□□ 0.27
LMO3-221ENST00000539534 NUTM2BA6NNL0 878 aaPredicted RBP16.7■□□□□ 0.26
LMO3-221ENST00000539534 NUTM2EB1AL46 878 aaPredicted RBP16.7■□□□□ 0.26
LMO3-221ENST00000539534 ILDR1Q86SU0 546 aaPredicted RBP16.7■□□□□ 0.26
LMO3-221ENST00000539534 NUTM2AQ8IVF1 878 aaPredicted RBP16.7■□□□□ 0.26
LMO3-221ENST00000539534 HOXC9P31274 260 aa16.69■□□□□ 0.26
LMO3-221ENST00000539534 PRDM11Q9NQV5 511 aa16.69■□□□□ 0.26
LMO3-221ENST00000539534 AXIN2Q9Y2T1 843 aa16.69■□□□□ 0.26
LMO3-221ENST00000539534 LRP6O75581 1613 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms