RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TRIM35Q9UPQ4 493 aa16.09■□□□□ 0.17
SFSWAP-208ENST00000539506 NINLQ9Y2I6 1382 aa16.09■□□□□ 0.17
SFSWAP-208ENST00000539506 U2SURPO15042 1029 aaKnown RBP16.08■□□□□ 0.17
SFSWAP-208ENST00000539506 FBLN1P23142 703 aa16.08■□□□□ 0.17
SFSWAP-208ENST00000539506 ALKQ9UM73 1620 aa16.08■□□□□ 0.16
SFSWAP-208ENST00000539506 CDK19Q9BWU1 502 aa16.08■□□□□ 0.16
SFSWAP-208ENST00000539506 CABP1Q9NZU7 370 aa16.07■□□□□ 0.16
SFSWAP-208ENST00000539506 FAM69CQ0P6D2 419 aa16.07■□□□□ 0.16
SFSWAP-208ENST00000539506 ARHGEF40Q8TER5 1519 aa16.06■□□□□ 0.16
SFSWAP-208ENST00000539506 USP19O94966 1318 aa16.06■□□□□ 0.16
SFSWAP-208ENST00000539506 TMPOP42166 694 aaKnown RBP16.06■□□□□ 0.16
SFSWAP-208ENST00000539506 WAPLQ7Z5K2 1190 aa16.06■□□□□ 0.16
SFSWAP-208ENST00000539506 ATAD2Q6PL18 1390 aa16.06■□□□□ 0.16
SFSWAP-208ENST00000539506 CLTCQ00610 1675 aaKnown RBP16.05■□□□□ 0.16
SFSWAP-208ENST00000539506 MYH16Q9H6N6 1097 aa16.05■□□□□ 0.16
SFSWAP-208ENST00000539506 NCBP3Q53F19 620 aaKnown RBP16.04■□□□□ 0.16
SFSWAP-208ENST00000539506 TERF2IPQ9NYB0 399 aa16.04■□□□□ 0.16
SFSWAP-208ENST00000539506 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
SFSWAP-208ENST00000539506 RRAGDQ9NQL2 400 aaPredicted RBP16.03■□□□□ 0.16
SFSWAP-208ENST00000539506 MED14O60244 1454 aa16.02■□□□□ 0.15
SFSWAP-208ENST00000539506 PNPLA6Q8IY17 1366 aa16.02■□□□□ 0.15
SFSWAP-208ENST00000539506 STAG3Q9UJ98 1225 aa16.01■□□□□ 0.15
SFSWAP-208ENST00000539506 A2ML1A8K2U0 1454 aa16.01■□□□□ 0.15
SFSWAP-208ENST00000539506 ANKRD26Q9UPS8 1709 aa16.01■□□□□ 0.15
SFSWAP-208ENST00000539506 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.01■□□□□ 0.15
SFSWAP-208ENST00000539506 SSH1Q8WYL5 1049 aa16■□□□□ 0.15
SFSWAP-208ENST00000539506 MVPQ14764 893 aaKnown RBP16■□□□□ 0.15
SFSWAP-208ENST00000539506 TSPOAP1O95153 1857 aa16■□□□□ 0.15
SFSWAP-208ENST00000539506 RIPK4P57078 832 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 MLECQ14165 292 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 PANK2Q9BZ23 570 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 PDZRN3Q9UPQ7 1066 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 DIP2BQ9P265 1576 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 DIAPH1O60610 1272 aaKnown RBP15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 TRIM27P14373 513 aa15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 HDGFL2Q7Z4V5 671 aaPredicted RBP15.99■□□□□ 0.15
SFSWAP-208ENST00000539506 ZKSCAN2Q63HK3 967 aa15.98■□□□□ 0.15
SFSWAP-208ENST00000539506 PMFBP1Q8TBY8 1022 aa15.98■□□□□ 0.15
SFSWAP-208ENST00000539506 POLKQ9UBT6 870 aa15.98■□□□□ 0.15
SFSWAP-208ENST00000539506 MAPK8IP3Q9UPT6 1336 aa15.98■□□□□ 0.15
SFSWAP-208ENST00000539506 DZIP1LQ8IYY4 767 aaKnown RBP15.97■□□□□ 0.15
SFSWAP-208ENST00000539506 SMC4Q9NTJ3 1288 aa15.97■□□□□ 0.15
SFSWAP-208ENST00000539506 VIRMAQ69YN4 1812 aaKnown RBP15.97■□□□□ 0.15
SFSWAP-208ENST00000539506 SETD1AO15047 1707 aaKnown RBP15.97■□□□□ 0.15
SFSWAP-208ENST00000539506 NCKAP5LQ9HCH0 1330 aa15.96■□□□□ 0.15
SFSWAP-208ENST00000539506 ZRANB1Q9UGI0 708 aa15.96■□□□□ 0.15
SFSWAP-208ENST00000539506 RIMS2Q9UQ26 1411 aa15.96■□□□□ 0.15
SFSWAP-208ENST00000539506 NOB1Q9ULX3 412 aaKnown RBP15.96■□□□□ 0.14
SFSWAP-208ENST00000539506 AAMPQ13685 434 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 PHACTR3Q96KR7 559 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 MFAP1P55081 439 aaKnown RBP15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 TBC1D2Q9BYX2 928 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 RSPH6AQ9H0K4 717 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 RIMBP3CA6NJZ7 1639 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 RIMBP3BA6NNM3 1639 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 RIMBP3Q9UFD9 1639 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 METP08581 1390 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 SPATA31D1Q6ZQQ2 1576 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 KIF20BQ96Q89 1820 aa15.95■□□□□ 0.14
SFSWAP-208ENST00000539506 BECN1Q14457 450 aa15.94■□□□□ 0.14
SFSWAP-208ENST00000539506 AGLP35573 1532 aa15.94■□□□□ 0.14
SFSWAP-208ENST00000539506 CT47B1P0C2W7 299 aaPredicted RBP15.94■□□□□ 0.14
SFSWAP-208ENST00000539506 FTSJ3Q8IY81 847 aaKnown RBP15.94■□□□□ 0.14
SFSWAP-208ENST00000539506 LRRC7Q96NW7 1537 aa15.94■□□□□ 0.14
SFSWAP-208ENST00000539506 PRKAR2BP31323 418 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 RWDD1Q9H446 243 aaPredicted RBP15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 EMILIN1Q9Y6C2 1016 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 IL16Q14005 1332 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 DLC1Q96QB1 1528 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 REREQ9P2R6 1566 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 NRXN3Q9Y4C0 1643 aa15.93■□□□□ 0.14
SFSWAP-208ENST00000539506 HMOX1P09601 288 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 ATF7IPQ6VMQ6 1270 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 NME9Q86XW9 330 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 FAM43AQ8N2R8 423 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 FOXD4L1Q9NU39 408 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 FCHSD2O94868 740 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 NAP1L5Q96NT1 182 aaPredicted RBP15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 THUMPD2Q9BTF0 503 aaKnown RBP15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 TXNDC2Q86VQ3 553 aa15.92■□□□□ 0.14
SFSWAP-208ENST00000539506 FAM135BQ49AJ0 1406 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 TMEM57Q8N5G2 664 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 CDC42BPGQ6DT37 1551 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 CPSF1Q10570 1443 aaKnown RBP15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 ITPRIPQ8IWB1 547 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 PPP6R1Q9UPN7 881 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 ATP7BP35670 1465 aa15.91■□□□□ 0.14
SFSWAP-208ENST00000539506 WASLO00401 505 aaPredicted RBP15.9■□□□□ 0.14
SFSWAP-208ENST00000539506 XRCC6P12956 609 aaKnown RBP eCLIP15.9■□□□□ 0.14
SFSWAP-208ENST00000539506 UPF2Q9HAU5 1272 aaKnown RBP15.9■□□□□ 0.14
SFSWAP-208ENST00000539506 UBE2Q2Q8WVN8 375 aa15.9■□□□□ 0.14
SFSWAP-208ENST00000539506 MAP2P11137 1827 aaKnown RBP15.89■□□□□ 0.13
SFSWAP-208ENST00000539506 PPIP5K1Q6PFW1 1433 aa15.89■□□□□ 0.13
SFSWAP-208ENST00000539506 IL13P35225 146 aa15.88■□□□□ 0.13
SFSWAP-208ENST00000539506 ZBTB40Q9NUA8 1239 aa15.88■□□□□ 0.13
SFSWAP-208ENST00000539506 CPS1P31327 1500 aa15.87■□□□□ 0.13
SFSWAP-208ENST00000539506 PLEKHG5O94827 1062 aa15.87■□□□□ 0.13
SFSWAP-208ENST00000539506 HDAC1Q13547 482 aaPredicted RBP15.87■□□□□ 0.13
SFSWAP-208ENST00000539506 TSPYL6Q8N831 410 aa15.87■□□□□ 0.13
SFSWAP-208ENST00000539506 ANTXR1Q9H6X2 564 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms