RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 LTKP29376 864 aa17.38■□□□□ 0.37
VPS33B-202ENST00000535906 NCBP3Q53F19 620 aaKnown RBP17.38■□□□□ 0.37
VPS33B-202ENST00000535906 NCKAP5LQ9HCH0 1330 aa17.37■□□□□ 0.37
VPS33B-202ENST00000535906 KDM2BQ8NHM5 1336 aa17.37■□□□□ 0.37
VPS33B-202ENST00000535906 ADAMTS13Q76LX8 1427 aa17.37■□□□□ 0.37
VPS33B-202ENST00000535906 CPS1P31327 1500 aa17.37■□□□□ 0.37
VPS33B-202ENST00000535906 MS4A1P11836 297 aa17.37■□□□□ 0.37
VPS33B-202ENST00000535906 NUDT16Q96DE0 195 aaKnown RBP17.37■□□□□ 0.37
VPS33B-202ENST00000535906 DIAPH1O60610 1272 aaKnown RBP17.36■□□□□ 0.37
VPS33B-202ENST00000535906 SKAP1Q86WV1 359 aa17.36■□□□□ 0.37
VPS33B-202ENST00000535906 IPO9Q96P70 1041 aaKnown RBP17.36■□□□□ 0.37
VPS33B-202ENST00000535906 POLKQ9UBT6 870 aa17.35■□□□□ 0.37
VPS33B-202ENST00000535906 ROBO2Q9HCK4 1378 aa17.35■□□□□ 0.37
VPS33B-202ENST00000535906 TMPOP42166 694 aaKnown RBP17.34■□□□□ 0.37
VPS33B-202ENST00000535906 RARSP54136 660 aaKnown RBP17.34■□□□□ 0.37
VPS33B-202ENST00000535906 EDC4Q6P2E9 1401 aaKnown RBP17.34■□□□□ 0.37
VPS33B-202ENST00000535906 CCDC61Q9Y6R9 512 aa17.34■□□□□ 0.37
VPS33B-202ENST00000535906 PPM1GO15355 546 aaPredicted RBP17.33■□□□□ 0.36
VPS33B-202ENST00000535906 NME9Q86XW9 330 aa17.33■□□□□ 0.36
VPS33B-202ENST00000535906 PLEKHG1Q9ULL1 1385 aa17.33■□□□□ 0.36
VPS33B-202ENST00000535906 PDE3AQ14432 1141 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 TRIM35Q9UPQ4 493 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 MAP2P11137 1827 aaKnown RBP17.32■□□□□ 0.36
VPS33B-202ENST00000535906 CENPQQ7L2Z9 268 aaPredicted RBP17.32■□□□□ 0.36
VPS33B-202ENST00000535906 MYH16Q9H6N6 1097 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 ZRANB1Q9UGI0 708 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 PRR36Q9H6K5 1346 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 MAPK8IP3Q9UPT6 1336 aa17.32■□□□□ 0.36
VPS33B-202ENST00000535906 CDC42BPGQ6DT37 1551 aa17.31■□□□□ 0.36
VPS33B-202ENST00000535906 PDE4AP27815 886 aa17.31■□□□□ 0.36
VPS33B-202ENST00000535906 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
VPS33B-202ENST00000535906 C3P01024 1663 aa17.31■□□□□ 0.36
VPS33B-202ENST00000535906 PAK3O75914 559 aaPredicted RBP17.31■□□□□ 0.36
VPS33B-202ENST00000535906 FRAT1Q92837 279 aaPredicted RBP17.3■□□□□ 0.36
VPS33B-202ENST00000535906 SLC26A8Q96RN1 970 aa17.3■□□□□ 0.36
VPS33B-202ENST00000535906 BACH2Q9BYV9 841 aa17.3■□□□□ 0.36
VPS33B-202ENST00000535906 CANXP27824 592 aaKnown RBP17.3■□□□□ 0.36
VPS33B-202ENST00000535906 PANK1Q8TE04 598 aa17.3■□□□□ 0.36
VPS33B-202ENST00000535906 EMILIN1Q9Y6C2 1016 aa17.29■□□□□ 0.36
VPS33B-202ENST00000535906 MON2Q7Z3U7 1717 aa17.29■□□□□ 0.36
VPS33B-202ENST00000535906 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.29■□□□□ 0.36
VPS33B-202ENST00000535906 TSR2Q969E8 191 aaKnown RBP17.29■□□□□ 0.36
VPS33B-202ENST00000535906 BCL2L13Q9BXK5 485 aa17.29■□□□□ 0.36
VPS33B-202ENST00000535906 RIPK4P57078 832 aa17.28■□□□□ 0.36
VPS33B-202ENST00000535906 COG6Q9Y2V7 657 aa17.28■□□□□ 0.36
VPS33B-202ENST00000535906 FCHSD2O94868 740 aa17.28■□□□□ 0.36
VPS33B-202ENST00000535906 EID1Q9Y6B2 187 aa17.28■□□□□ 0.36
VPS33B-202ENST00000535906 PTPRUQ92729 1446 aa17.27■□□□□ 0.36
VPS33B-202ENST00000535906 PNNQ9H307 717 aaKnown RBP17.27■□□□□ 0.36
VPS33B-202ENST00000535906 ZBTB47Q9UFB7 747 aaPredicted RBP17.27■□□□□ 0.36
VPS33B-202ENST00000535906 AKAP12Q02952 1782 aa17.27■□□□□ 0.36
VPS33B-202ENST00000535906 LRRC7Q96NW7 1537 aa17.27■□□□□ 0.35
VPS33B-202ENST00000535906 RSPH6AQ9H0K4 717 aa17.27■□□□□ 0.35
VPS33B-202ENST00000535906 FER1L4A9Z1Z3 1794 aa17.26■□□□□ 0.35
VPS33B-202ENST00000535906 ZNF692Q9BU19 519 aaPredicted RBP17.26■□□□□ 0.35
VPS33B-202ENST00000535906 TNNQ9UQP3 1299 aa17.26■□□□□ 0.35
VPS33B-202ENST00000535906 COG3Q96JB2 828 aa17.26■□□□□ 0.35
VPS33B-202ENST00000535906 ITSN1Q15811 1721 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 SLIT1O75093 1534 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 NUTM2FA1L443 756 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 PRKAR2BP31323 418 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 AATKQ6ZMQ8 1374 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 ARHGAP23Q9P227 1491 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 RLBP1P12271 317 aa17.25■□□□□ 0.35
VPS33B-202ENST00000535906 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
VPS33B-202ENST00000535906 EXOSC9Q06265 439 aaKnown RBP17.24■□□□□ 0.35
VPS33B-202ENST00000535906 HMOX1P09601 288 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 IL13P35225 146 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 RRS1Q15050 365 aaKnown RBP17.23■□□□□ 0.35
VPS33B-202ENST00000535906 CLUAP1Q96AJ1 413 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 IL16Q14005 1332 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 IGHDP01880 384 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 AMOTL2Q9Y2J4 779 aa17.23■□□□□ 0.35
VPS33B-202ENST00000535906 CDK12Q9NYV4 1490 aaPredicted RBP17.22■□□□□ 0.35
VPS33B-202ENST00000535906 PHACTR3Q96KR7 559 aa17.22■□□□□ 0.35
VPS33B-202ENST00000535906 ACEP12821 1306 aa17.22■□□□□ 0.35
VPS33B-202ENST00000535906 CT47B1P0C2W7 299 aaPredicted RBP17.22■□□□□ 0.35
VPS33B-202ENST00000535906 TBX22Q9Y458 520 aa17.21■□□□□ 0.35
VPS33B-202ENST00000535906 TOPAZ1Q8N9V7 1692 aa17.21■□□□□ 0.35
VPS33B-202ENST00000535906 NPM2Q86SE8 214 aaKnown RBP17.21■□□□□ 0.35
VPS33B-202ENST00000535906 THEMISQ8N1K5 641 aaPredicted RBP17.21■□□□□ 0.35
VPS33B-202ENST00000535906 PLEKHG3A1L390 1219 aa17.2■□□□□ 0.34
VPS33B-202ENST00000535906 TTC21BQ7Z4L5 1316 aa17.2■□□□□ 0.34
VPS33B-202ENST00000535906 NEFMP07197 916 aa17.19■□□□□ 0.34
VPS33B-202ENST00000535906 NRKQ7Z2Y5 1582 aa17.19■□□□□ 0.34
VPS33B-202ENST00000535906 NFE2L2Q16236 605 aa17.18■□□□□ 0.34
VPS33B-202ENST00000535906 RGS3P49796 1198 aa17.17■□□□□ 0.34
VPS33B-202ENST00000535906 ZKSCAN2Q63HK3 967 aa17.17■□□□□ 0.34
VPS33B-202ENST00000535906 SSH1Q8WYL5 1049 aa17.17■□□□□ 0.34
VPS33B-202ENST00000535906 SMC4Q9NTJ3 1288 aa17.17■□□□□ 0.34
VPS33B-202ENST00000535906 USP6P35125 1406 aa17.17■□□□□ 0.34
VPS33B-202ENST00000535906 PTCH1Q13635 1447 aa17.16■□□□□ 0.34
VPS33B-202ENST00000535906 PCDHB15Q9Y5E8 787 aa17.16■□□□□ 0.34
VPS33B-202ENST00000535906 AAMPQ13685 434 aa17.15■□□□□ 0.34
VPS33B-202ENST00000535906 THUMPD2Q9BTF0 503 aaKnown RBP17.15■□□□□ 0.34
VPS33B-202ENST00000535906 OVOS2A0A0J9YW53 1432 aa17.15■□□□□ 0.34
VPS33B-202ENST00000535906 OVOS2Q6IE36 1432 aa17.15■□□□□ 0.34
VPS33B-202ENST00000535906 NBR1Q14596 966 aa17.15■□□□□ 0.34
VPS33B-202ENST00000535906 DZIP1LQ8IYY4 767 aaKnown RBP17.15■□□□□ 0.34
VPS33B-202ENST00000535906 MVPQ14764 893 aaKnown RBP17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms