RNA–Protein interactions for RNA: ENST00000533820.5

CAPN1-226, Transcript of calpain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CAPN1, Length 3,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN1-226ENST00000533820 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.43■■□□□ 1.5
CAPN1-226ENST00000533820 NEURL4Q96JN8 1562 aa24.43■■□□□ 1.5
CAPN1-226ENST00000533820 FYB1O15117 783 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 PLEKHF1Q96S99 279 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 SETBP1Q9Y6X0 1596 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 TULP4Q9NRJ4 1543 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 CD109Q6YHK3 1445 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 LNPKQ9C0E8 428 aa24.42■■□□□ 1.5
CAPN1-226ENST00000533820 AAMPQ13685 434 aa24.41■■□□□ 1.5
CAPN1-226ENST00000533820 RPGRIP1LQ68CZ1 1315 aa24.41■■□□□ 1.5
CAPN1-226ENST00000533820 ELL2O00472 640 aaPredicted RBP24.41■■□□□ 1.5
CAPN1-226ENST00000533820 THUMPD2Q9BTF0 503 aaKnown RBP24.41■■□□□ 1.5
CAPN1-226ENST00000533820 DDX19BQ9UMR2 479 aa24.4■■□□□ 1.5
CAPN1-226ENST00000533820 PPLO60437 1756 aa24.39■■□□□ 1.5
CAPN1-226ENST00000533820 RRAGDQ9NQL2 400 aaPredicted RBP24.38■■□□□ 1.49
CAPN1-226ENST00000533820 GLI2P10070 1586 aa24.38■■□□□ 1.49
CAPN1-226ENST00000533820 C1orf115Q9H7X2 142 aa24.38■■□□□ 1.49
CAPN1-226ENST00000533820 DIAPH1O60610 1272 aaKnown RBP24.37■■□□□ 1.49
CAPN1-226ENST00000533820 HMOX1P09601 288 aa24.37■■□□□ 1.49
CAPN1-226ENST00000533820 CABP1Q9NZU7 370 aa24.36■■□□□ 1.49
CAPN1-226ENST00000533820 LMTK2Q8IWU2 1503 aa24.36■■□□□ 1.49
CAPN1-226ENST00000533820 TERF2IPQ9NYB0 399 aa24.36■■□□□ 1.49
CAPN1-226ENST00000533820 ZC3H13Q5T200 1668 aaKnown RBP24.35■■□□□ 1.49
CAPN1-226ENST00000533820 FRMPD1Q5SYB0 1578 aa24.34■■□□□ 1.49
CAPN1-226ENST00000533820 POGZQ7Z3K3 1410 aa24.33■■□□□ 1.49
CAPN1-226ENST00000533820 PRKAR2BP31323 418 aa24.33■■□□□ 1.49
CAPN1-226ENST00000533820 NSD2O96028 1365 aa24.33■■□□□ 1.48
CAPN1-226ENST00000533820 HSP90AA1P07900 732 aaKnown RBP24.32■■□□□ 1.48
CAPN1-226ENST00000533820 HDAC1Q13547 482 aaPredicted RBP24.32■■□□□ 1.48
CAPN1-226ENST00000533820 ABCC11Q96J66 1382 aa24.32■■□□□ 1.48
CAPN1-226ENST00000533820 FOXD4L1Q9NU39 408 aa24.32■■□□□ 1.48
CAPN1-226ENST00000533820 ABCC3O15438 1527 aa24.31■■□□□ 1.48
CAPN1-226ENST00000533820 FBXO31Q5XUX0 539 aaPredicted RBP24.31■■□□□ 1.48
CAPN1-226ENST00000533820 ZBTB40Q9NUA8 1239 aa24.31■■□□□ 1.48
CAPN1-226ENST00000533820 MCM4P33991 863 aa24.31■■□□□ 1.48
CAPN1-226ENST00000533820 STAG3Q9UJ98 1225 aa24.31■■□□□ 1.48
CAPN1-226ENST00000533820 CDK19Q9BWU1 502 aa24.31■■□□□ 1.48
CAPN1-226ENST00000533820 HDGFL2Q7Z4V5 671 aaPredicted RBP24.29■■□□□ 1.48
CAPN1-226ENST00000533820 CT47B1P0C2W7 299 aaPredicted RBP24.29■■□□□ 1.48
CAPN1-226ENST00000533820 HSCBQ8IWL3 235 aa24.29■■□□□ 1.48
CAPN1-226ENST00000533820 SMC5Q8IY18 1101 aa24.29■■□□□ 1.48
CAPN1-226ENST00000533820 CAMSAP1Q5T5Y3 1602 aa24.29■■□□□ 1.48
CAPN1-226ENST00000533820 ANKRD45Q5TZF3 282 aa24.29■■□□□ 1.48
CAPN1-226ENST00000533820 IPO8O15397 1037 aaKnown RBP24.28■■□□□ 1.48
CAPN1-226ENST00000533820 PHACTR3Q96KR7 559 aa24.28■■□□□ 1.48
CAPN1-226ENST00000533820 WAPLQ7Z5K2 1190 aa24.27■■□□□ 1.48
CAPN1-226ENST00000533820 PANK2Q9BZ23 570 aa24.27■■□□□ 1.48
CAPN1-226ENST00000533820 ARHGEF28Q8N1W1 1705 aaKnown RBP24.27■■□□□ 1.48
CAPN1-226ENST00000533820 TSPYL6Q8N831 410 aa24.27■■□□□ 1.48
CAPN1-226ENST00000533820 SIGLEC1Q9BZZ2 1709 aa24.26■■□□□ 1.47
CAPN1-226ENST00000533820 RRP9O43818 475 aaKnown RBP24.26■■□□□ 1.47
CAPN1-226ENST00000533820 CHMP5Q9NZZ3 219 aa24.26■■□□□ 1.47
CAPN1-226ENST00000533820 PUS7Q96PZ0 661 aaKnown RBP24.26■■□□□ 1.47
CAPN1-226ENST00000533820 KIF16BQ96L93 1317 aa24.25■■□□□ 1.47
CAPN1-226ENST00000533820 FGD1P98174 961 aa24.25■■□□□ 1.47
CAPN1-226ENST00000533820 NEXMIFQ5QGS0 1516 aa24.24■■□□□ 1.47
CAPN1-226ENST00000533820 PDE4CQ08493 712 aa24.24■■□□□ 1.47
CAPN1-226ENST00000533820 CHD1LQ86WJ1 897 aa24.24■■□□□ 1.47
CAPN1-226ENST00000533820 USP32Q8NFA0 1604 aa24.24■■□□□ 1.47
CAPN1-226ENST00000533820 ADGRB2O60241 1585 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 MLH3Q9UHC1 1453 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 GOLGA6L3A6NEY3 463 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 TRAK2O60296 914 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 XRCC6P12956 609 aaKnown RBP eCLIP24.23■■□□□ 1.47
CAPN1-226ENST00000533820 NUCB1Q02818 461 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 EMILIN1Q9Y6C2 1016 aa24.23■■□□□ 1.47
CAPN1-226ENST00000533820 L1TD1Q5T7N2 865 aaKnown RBP24.22■■□□□ 1.47
CAPN1-226ENST00000533820 ZRANB1Q9UGI0 708 aa24.22■■□□□ 1.47
CAPN1-226ENST00000533820 HECW2Q9P2P5 1572 aa24.22■■□□□ 1.47
CAPN1-226ENST00000533820 ATAD2Q6PL18 1390 aa24.21■■□□□ 1.47
CAPN1-226ENST00000533820 POLKQ9UBT6 870 aa24.21■■□□□ 1.47
CAPN1-226ENST00000533820 COL3A1P02461 1466 aaPredicted RBP24.2■■□□□ 1.46
CAPN1-226ENST00000533820 ZMYM3Q14202 1370 aa24.2■■□□□ 1.46
CAPN1-226ENST00000533820 HSP90AB1P08238 724 aaKnown RBP24.19■■□□□ 1.46
CAPN1-226ENST00000533820 IL16Q14005 1332 aa24.19■■□□□ 1.46
CAPN1-226ENST00000533820 SLC52A1Q9NWF4 448 aa24.19■■□□□ 1.46
CAPN1-226ENST00000533820 FCHSD2O94868 740 aa24.19■■□□□ 1.46
CAPN1-226ENST00000533820 RBM42Q9BTD8 480 aaKnown RBP24.19■■□□□ 1.46
CAPN1-226ENST00000533820 NCBP3Q53F19 620 aaKnown RBP24.18■■□□□ 1.46
CAPN1-226ENST00000533820 DCTN1Q14203 1278 aa24.18■■□□□ 1.46
CAPN1-226ENST00000533820 FAM83GA6ND36 823 aa24.17■■□□□ 1.46
CAPN1-226ENST00000533820 YTHDC2Q9H6S0 1430 aaKnown RBP24.17■■□□□ 1.46
CAPN1-226ENST00000533820 PNNQ9H307 717 aaKnown RBP24.16■■□□□ 1.46
CAPN1-226ENST00000533820 CD163L1Q9NR16 1453 aa24.16■■□□□ 1.46
CAPN1-226ENST00000533820 NCKAP5LQ9HCH0 1330 aa24.16■■□□□ 1.46
CAPN1-226ENST00000533820 YEATS2Q9ULM3 1422 aa24.16■■□□□ 1.46
CAPN1-226ENST00000533820 VAMP4O75379 141 aa24.15■■□□□ 1.46
CAPN1-226ENST00000533820 CD2BP2O95400 341 aaKnown RBP24.15■■□□□ 1.46
CAPN1-226ENST00000533820 NME9Q86XW9 330 aa24.15■■□□□ 1.46
CAPN1-226ENST00000533820 ZBTB7BO15156 539 aaPredicted RBP24.15■■□□□ 1.46
CAPN1-226ENST00000533820 RRS1Q15050 365 aaKnown RBP24.14■■□□□ 1.46
CAPN1-226ENST00000533820 ALDH1L2Q3SY69 923 aa24.14■■□□□ 1.45
CAPN1-226ENST00000533820 PTPRMP28827 1452 aa24.14■■□□□ 1.45
CAPN1-226ENST00000533820 APBB1O00213 710 aa24.13■■□□□ 1.45
CAPN1-226ENST00000533820 MLECQ14165 292 aa24.13■■□□□ 1.45
CAPN1-226ENST00000533820 MBIPQ9NS73 344 aa24.13■■□□□ 1.45
CAPN1-226ENST00000533820 NFE2L2Q16236 605 aa24.13■■□□□ 1.45
CAPN1-226ENST00000533820 PIK3C2BO00750 1634 aa24.13■■□□□ 1.45
CAPN1-226ENST00000533820 MRPL50Q8N5N7 158 aaKnown RBP24.12■■□□□ 1.45
CAPN1-226ENST00000533820 MYO5BQ9ULV0 1848 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms