RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 MYO15BQ96JP2 1530 aa10.22□□□□□ -0.77
NUP54-218ENST00000515460 SPDYE5A6NIY4 337 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 SH3BP2P78314 561 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 DIXDC1Q155Q3 683 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 CSPP1Q1MSJ5 1256 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 FBXO41Q8TF61 875 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 BAP1Q92560 729 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 UNC93B1Q9H1C4 597 aa10.21□□□□□ -0.77
NUP54-218ENST00000515460 SLC24A3Q9HC58 644 aa10.2□□□□□ -0.78
NUP54-218ENST00000515460 ATP13A2Q9NQ11 1180 aa10.2□□□□□ -0.78
NUP54-218ENST00000515460 PDE4DQ08499 809 aa10.19□□□□□ -0.78
NUP54-218ENST00000515460 KCNH2Q12809 1159 aa10.19□□□□□ -0.78
NUP54-218ENST00000515460 RIC3Q7Z5B4 369 aa10.19□□□□□ -0.78
NUP54-218ENST00000515460 SPTLC1O15269 473 aa10.18□□□□□ -0.78
NUP54-218ENST00000515460 SIAH2O43255 324 aa10.18□□□□□ -0.78
NUP54-218ENST00000515460 HRCP23327 699 aa10.18□□□□□ -0.78
NUP54-218ENST00000515460 CTHP32929 405 aa10.18□□□□□ -0.78
NUP54-218ENST00000515460 CFAP99D6REC4 459 aa10.17□□□□□ -0.78
NUP54-218ENST00000515460 GJA5P36382 358 aa10.17□□□□□ -0.78
NUP54-218ENST00000515460 DESI1Q6ICB0 168 aa10.17□□□□□ -0.78
NUP54-218ENST00000515460 CABLES1Q8TDN4 633 aa10.17□□□□□ -0.78
NUP54-218ENST00000515460 WASF2Q9Y6W5 498 aa10.17□□□□□ -0.78
NUP54-218ENST00000515460 ZBTB3Q9H5J0 574 aa10.16□□□□□ -0.78
NUP54-218ENST00000515460 SCRIBQ14160 1630 aa10.15□□□□□ -0.78
NUP54-218ENST00000515460 SNRPBP14678 240 aaKnown RBP10.15□□□□□ -0.78
NUP54-218ENST00000515460 TREML4Q6UXN2 200 aa10.15□□□□□ -0.78
NUP54-218ENST00000515460 TSC1Q92574 1164 aa10.15□□□□□ -0.78
NUP54-218ENST00000515460 LYPD8Q6UX82 237 aa10.14□□□□□ -0.79
NUP54-218ENST00000515460 ZNF511Q8NB15 262 aa10.14□□□□□ -0.79
NUP54-218ENST00000515460 NUTM2BA6NNL0 878 aaPredicted RBP10.13□□□□□ -0.79
NUP54-218ENST00000515460 NUTM2EB1AL46 878 aaPredicted RBP10.13□□□□□ -0.79
NUP54-218ENST00000515460 NUTM2DQ5VT03 806 aaPredicted RBP10.13□□□□□ -0.79
NUP54-218ENST00000515460 NUTM2AQ8IVF1 878 aaPredicted RBP10.13□□□□□ -0.79
NUP54-218ENST00000515460 LIMD1Q9UGP4 676 aa10.13□□□□□ -0.79
NUP54-218ENST00000515460 TLL2Q9Y6L7 1015 aa10.13□□□□□ -0.79
NUP54-218ENST00000515460 MYSM1Q5VVJ2 828 aa10.12□□□□□ -0.79
NUP54-218ENST00000515460 PRPF38BQ5VTL8 546 aaKnown RBP10.11□□□□□ -0.79
NUP54-218ENST00000515460 SENP2Q9HC62 589 aa10.11□□□□□ -0.79
NUP54-218ENST00000515460 MAP10Q9P2G4 905 aa10.11□□□□□ -0.79
NUP54-218ENST00000515460 ARAP1Q96P48 1450 aa10.1□□□□□ -0.79
NUP54-218ENST00000515460 CAPN5O15484 640 aaPredicted RBP10.1□□□□□ -0.79
NUP54-218ENST00000515460 QPCTQ16769 361 aa10.1□□□□□ -0.79
NUP54-218ENST00000515460 TRIM47Q96LD4 638 aa10.1□□□□□ -0.79
NUP54-218ENST00000515460 PER1O15534 1290 aaPredicted RBP10.09□□□□□ -0.79
NUP54-218ENST00000515460 BMP1P13497 986 aa10.09□□□□□ -0.79
NUP54-218ENST00000515460 VARSP26640 1264 aaKnown RBP10.09□□□□□ -0.79
NUP54-218ENST00000515460 DISP3Q9P2K9 1392 aa10.09□□□□□ -0.79
NUP54-218ENST00000515460 WFS1O76024 890 aa10.08□□□□□ -0.8
NUP54-218ENST00000515460 ZCCHC6Q5VYS8 1495 aaKnown RBP10.08□□□□□ -0.8
NUP54-218ENST00000515460 KIF21AQ7Z4S6 1674 aa10.07□□□□□ -0.8
NUP54-218ENST00000515460 LCE2AQ5TA79 106 aaPredicted RBP10.07□□□□□ -0.8
NUP54-218ENST00000515460 FOXJ1Q92949 421 aa10.07□□□□□ -0.8
NUP54-218ENST00000515460 POLR3EQ9NVU0 708 aa10.07□□□□□ -0.8
NUP54-218ENST00000515460 PLEKHG3A1L390 1219 aa10.06□□□□□ -0.8
NUP54-218ENST00000515460 F12P00748 615 aaPredicted RBP10.06□□□□□ -0.8
NUP54-218ENST00000515460 ARID5BQ14865 1188 aa10.06□□□□□ -0.8
NUP54-218ENST00000515460 AGERQ15109 404 aa10.06□□□□□ -0.8
NUP54-218ENST00000515460 KIFC2Q96AC6 838 aa10.06□□□□□ -0.8
NUP54-218ENST00000515460 LILRB3O75022 631 aa10.05□□□□□ -0.8
NUP54-218ENST00000515460 RTL5Q5HYW3 569 aaPredicted RBP10.05□□□□□ -0.8
NUP54-218ENST00000515460 FAM174AQ8TBP5 190 aa10.05□□□□□ -0.8
NUP54-218ENST00000515460 DCAF1Q9Y4B6 1507 aa10.05□□□□□ -0.8
NUP54-218ENST00000515460 NFX1Q12986 1120 aaKnown RBP10.04□□□□□ -0.8
NUP54-218ENST00000515460 NNTQ13423 1086 aa10.04□□□□□ -0.8
NUP54-218ENST00000515460 TRIM46Q7Z4K8 759 aa10.04□□□□□ -0.8
NUP54-218ENST00000515460 CLK2P49760 499 aaKnown RBP10.03□□□□□ -0.8
NUP54-218ENST00000515460 RSPH6AQ9H0K4 717 aa10.02□□□□□ -0.81
NUP54-218ENST00000515460 TERTO14746 1132 aaKnown RBP10.01□□□□□ -0.81
NUP54-218ENST00000515460 TUSC1Q2TAM9 212 aa10.01□□□□□ -0.81
NUP54-218ENST00000515460 HELBQ8NG08 1087 aaPredicted RBP10.01□□□□□ -0.81
NUP54-218ENST00000515460 WDR4P57081 412 aaKnown RBP10□□□□□ -0.81
NUP54-218ENST00000515460 MPNDQ8N594 471 aa10□□□□□ -0.81
NUP54-218ENST00000515460 ATP1B4Q9UN42 357 aaPredicted RBP10□□□□□ -0.81
NUP54-218ENST00000515460 ERCC6L2Q5T890 1561 aa10□□□□□ -0.81
NUP54-218ENST00000515460 ADH1CP00326 375 aa9.99□□□□□ -0.81
NUP54-218ENST00000515460 C4orf48Q5BLP8 95 aa9.99□□□□□ -0.81
NUP54-218ENST00000515460 BPHLQ86WA6 291 aaPredicted RBP9.99□□□□□ -0.81
NUP54-218ENST00000515460 ZFP42Q96MM3 310 aa9.98□□□□□ -0.81
NUP54-218ENST00000515460 GPBP1L1Q9HC44 474 aaPredicted RBP9.98□□□□□ -0.81
NUP54-218ENST00000515460 TIMP2P16035 220 aa9.97□□□□□ -0.81
NUP54-218ENST00000515460 CTDSPL2Q05D32 466 aa9.97□□□□□ -0.81
NUP54-218ENST00000515460 ARMC2Q8NEN0 867 aa9.97□□□□□ -0.81
NUP54-218ENST00000515460 CDK15Q96Q40 435 aa9.97□□□□□ -0.81
NUP54-218ENST00000515460 HECW2Q9P2P5 1572 aa9.96□□□□□ -0.82
NUP54-218ENST00000515460 ZIC2O95409 532 aaPredicted RBP9.95□□□□□ -0.82
NUP54-218ENST00000515460 MRPL14Q6P1L8 145 aaKnown RBP9.95□□□□□ -0.82
NUP54-218ENST00000515460 PURBQ96QR8 312 aaKnown RBP9.95□□□□□ -0.82
NUP54-218ENST00000515460 KDM4CQ9H3R0 1056 aa9.95□□□□□ -0.82
NUP54-218ENST00000515460 MAGEB6P1A0A0J9YX57 407 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 NR3C2P08235 984 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 GRM5P41594 1212 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 VEGFBP49765 207 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 SCARF1Q14162 830 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 LCE2CQ5TA81 110 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 KLF16Q9BXK1 252 aaPredicted RBP9.94□□□□□ -0.82
NUP54-218ENST00000515460 FAM117AQ9C073 453 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 ZFAND3Q9H8U3 227 aa9.94□□□□□ -0.82
NUP54-218ENST00000515460 NR5A1Q13285 461 aa9.93□□□□□ -0.82
NUP54-218ENST00000515460 NBPF14Q5TI25 921 aa9.93□□□□□ -0.82
NUP54-218ENST00000515460 PROCA1Q8NCQ7 364 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms