RNA–Protein interactions for RNA: ENST00000515351.1

PCDH1-208, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 2,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-208ENST00000515351 U2SURPO15042 1029 aaKnown RBP19.29■□□□□ 0.68
PCDH1-208ENST00000515351 RLBP1P12271 317 aa19.29■□□□□ 0.68
PCDH1-208ENST00000515351 HDGFL2Q7Z4V5 671 aaPredicted RBP19.29■□□□□ 0.68
PCDH1-208ENST00000515351 BCL2L13Q9BXK5 485 aa19.29■□□□□ 0.68
PCDH1-208ENST00000515351 MAPK8IP3Q9UPT6 1336 aa19.28■□□□□ 0.68
PCDH1-208ENST00000515351 LAS1LQ9Y4W2 734 aaKnown RBP19.28■□□□□ 0.68
PCDH1-208ENST00000515351 TMPOP42166 694 aaKnown RBP19.27■□□□□ 0.68
PCDH1-208ENST00000515351 PNPLA6Q8IY17 1366 aa19.27■□□□□ 0.68
PCDH1-208ENST00000515351 CT47B1P0C2W7 299 aaPredicted RBP19.27■□□□□ 0.67
PCDH1-208ENST00000515351 TNNQ9UQP3 1299 aa19.27■□□□□ 0.67
PCDH1-208ENST00000515351 PMFBP1Q8TBY8 1022 aa19.26■□□□□ 0.67
PCDH1-208ENST00000515351 BCL11AQ9H165 835 aa19.26■□□□□ 0.67
PCDH1-208ENST00000515351 CDC42BPGQ6DT37 1551 aa19.26■□□□□ 0.67
PCDH1-208ENST00000515351 CABP1Q9NZU7 370 aa19.26■□□□□ 0.67
PCDH1-208ENST00000515351 ATP7BP35670 1465 aa19.25■□□□□ 0.67
PCDH1-208ENST00000515351 RIMS2Q9UQ26 1411 aa19.25■□□□□ 0.67
PCDH1-208ENST00000515351 PPM1GO15355 546 aaPredicted RBP19.25■□□□□ 0.67
PCDH1-208ENST00000515351 TRIM35Q9UPQ4 493 aa19.25■□□□□ 0.67
PCDH1-208ENST00000515351 MAP2P11137 1827 aaKnown RBP19.25■□□□□ 0.67
PCDH1-208ENST00000515351 TSR2Q969E8 191 aaKnown RBP19.24■□□□□ 0.67
PCDH1-208ENST00000515351 NRXN3Q9Y4C0 1643 aa19.24■□□□□ 0.67
PCDH1-208ENST00000515351 USP35Q9P2H5 1018 aa19.24■□□□□ 0.67
PCDH1-208ENST00000515351 PCDHB15Q9Y5E8 787 aa19.24■□□□□ 0.67
PCDH1-208ENST00000515351 DIAPH1O60610 1272 aaKnown RBP19.23■□□□□ 0.67
PCDH1-208ENST00000515351 IL16Q14005 1332 aa19.22■□□□□ 0.67
PCDH1-208ENST00000515351 NEFMP07197 916 aa19.22■□□□□ 0.67
PCDH1-208ENST00000515351 ZKSCAN2Q63HK3 967 aa19.22■□□□□ 0.67
PCDH1-208ENST00000515351 LRRC7Q96NW7 1537 aa19.21■□□□□ 0.67
PCDH1-208ENST00000515351 MVPQ14764 893 aaKnown RBP19.21■□□□□ 0.67
PCDH1-208ENST00000515351 EXOSC9Q06265 439 aaKnown RBP19.2■□□□□ 0.66
PCDH1-208ENST00000515351 WAPLQ7Z5K2 1190 aa19.2■□□□□ 0.66
PCDH1-208ENST00000515351 PNNQ9H307 717 aaKnown RBP19.2■□□□□ 0.66
PCDH1-208ENST00000515351 DAXXQ9UER7 740 aaPredicted RBP19.19■□□□□ 0.66
PCDH1-208ENST00000515351 ZMYM3Q14202 1370 aa19.19■□□□□ 0.66
PCDH1-208ENST00000515351 RIPK4P57078 832 aa19.18■□□□□ 0.66
PCDH1-208ENST00000515351 DZIP1LQ8IYY4 767 aaKnown RBP19.18■□□□□ 0.66
PCDH1-208ENST00000515351 KNDC1Q76NI1 1749 aa19.18■□□□□ 0.66
PCDH1-208ENST00000515351 SLC4A3P48751 1232 aa19.18■□□□□ 0.66
PCDH1-208ENST00000515351 FTSJ3Q8IY81 847 aaKnown RBP19.18■□□□□ 0.66
PCDH1-208ENST00000515351 RWDD1Q9H446 243 aaPredicted RBP19.18■□□□□ 0.66
PCDH1-208ENST00000515351 SMC4Q9NTJ3 1288 aa19.18■□□□□ 0.66
PCDH1-208ENST00000515351 FCHSD2O94868 740 aa19.17■□□□□ 0.66
PCDH1-208ENST00000515351 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.17■□□□□ 0.66
PCDH1-208ENST00000515351 FAM135BQ49AJ0 1406 aa19.16■□□□□ 0.66
PCDH1-208ENST00000515351 USP19O94966 1318 aa19.16■□□□□ 0.66
PCDH1-208ENST00000515351 SSH1Q8WYL5 1049 aa19.16■□□□□ 0.66
PCDH1-208ENST00000515351 CPSF1Q10570 1443 aaKnown RBP19.16■□□□□ 0.66
PCDH1-208ENST00000515351 MLECQ14165 292 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 POLKQ9UBT6 870 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 MON2Q7Z3U7 1717 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 KIF13AQ9H1H9 1805 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 TRIM27P14373 513 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 PDZRN3Q9UPQ7 1066 aa19.15■□□□□ 0.66
PCDH1-208ENST00000515351 EDC4Q6P2E9 1401 aaKnown RBP19.15■□□□□ 0.66
PCDH1-208ENST00000515351 PPIP5K1Q6PFW1 1433 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 RSPH6AQ9H0K4 717 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 METP08581 1390 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 AKAP12Q02952 1782 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 ATF7IPQ6VMQ6 1270 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 ITSN1Q15811 1721 aa19.13■□□□□ 0.65
PCDH1-208ENST00000515351 WASLO00401 505 aaPredicted RBP19.12■□□□□ 0.65
PCDH1-208ENST00000515351 SEC24BO95487 1268 aa19.12■□□□□ 0.65
PCDH1-208ENST00000515351 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.12■□□□□ 0.65
PCDH1-208ENST00000515351 FBLN1P23142 703 aa19.11■□□□□ 0.65
PCDH1-208ENST00000515351 PRKAR2BP31323 418 aa19.11■□□□□ 0.65
PCDH1-208ENST00000515351 CDK12Q9NYV4 1490 aaPredicted RBP19.11■□□□□ 0.65
PCDH1-208ENST00000515351 DDX19BQ9UMR2 479 aa19.11■□□□□ 0.65
PCDH1-208ENST00000515351 DLG5Q8TDM6 1919 aa19.1■□□□□ 0.65
PCDH1-208ENST00000515351 CPS1P31327 1500 aa19.1■□□□□ 0.65
PCDH1-208ENST00000515351 NOB1Q9ULX3 412 aaKnown RBP19.1■□□□□ 0.65
PCDH1-208ENST00000515351 TECPR2O15040 1411 aa19.1■□□□□ 0.65
PCDH1-208ENST00000515351 KIF16BQ96L93 1317 aa19.09■□□□□ 0.65
PCDH1-208ENST00000515351 C3P01024 1663 aa19.09■□□□□ 0.65
PCDH1-208ENST00000515351 ITPRIPQ8IWB1 547 aa19.09■□□□□ 0.65
PCDH1-208ENST00000515351 UBR1Q8IWV7 1749 aa19.08■□□□□ 0.64
PCDH1-208ENST00000515351 HDAC1Q13547 482 aaPredicted RBP19.08■□□□□ 0.64
PCDH1-208ENST00000515351 NFKBIBQ15653 356 aa19.08■□□□□ 0.64
PCDH1-208ENST00000515351 ALDH1L2Q3SY69 923 aa19.08■□□□□ 0.64
PCDH1-208ENST00000515351 AATKQ6ZMQ8 1374 aa19.07■□□□□ 0.64
PCDH1-208ENST00000515351 TXNDC2Q86VQ3 553 aa19.07■□□□□ 0.64
PCDH1-208ENST00000515351 NME9Q86XW9 330 aa19.07■□□□□ 0.64
PCDH1-208ENST00000515351 IPO8O15397 1037 aaKnown RBP19.07■□□□□ 0.64
PCDH1-208ENST00000515351 SIRT1Q96EB6 747 aa19.07■□□□□ 0.64
PCDH1-208ENST00000515351 EMILIN1Q9Y6C2 1016 aa19.07■□□□□ 0.64
PCDH1-208ENST00000515351 NFE2L2Q16236 605 aa19.06■□□□□ 0.64
PCDH1-208ENST00000515351 NUDT16Q96DE0 195 aaKnown RBP19.06■□□□□ 0.64
PCDH1-208ENST00000515351 ESF1Q9H501 851 aaKnown RBP19.06■□□□□ 0.64
PCDH1-208ENST00000515351 IL13P35225 146 aa19.06■□□□□ 0.64
PCDH1-208ENST00000515351 PHACTR3Q96KR7 559 aa19.06■□□□□ 0.64
PCDH1-208ENST00000515351 HMOX1P09601 288 aa19.05■□□□□ 0.64
PCDH1-208ENST00000515351 TMEM57Q8N5G2 664 aa19.05■□□□□ 0.64
PCDH1-208ENST00000515351 ZNF428Q96B54 188 aa19.05■□□□□ 0.64
PCDH1-208ENST00000515351 CCDC61Q9Y6R9 512 aa19.05■□□□□ 0.64
PCDH1-208ENST00000515351 HDGFP51858 240 aaKnown RBP19.04■□□□□ 0.64
PCDH1-208ENST00000515351 BRPF1P55201 1214 aaPredicted RBP19.03■□□□□ 0.64
PCDH1-208ENST00000515351 ZBTB40Q9NUA8 1239 aa19.03■□□□□ 0.64
PCDH1-208ENST00000515351 CALD1Q05682 793 aaKnown RBP19.03■□□□□ 0.64
PCDH1-208ENST00000515351 ZRANB1Q9UGI0 708 aa19.03■□□□□ 0.64
PCDH1-208ENST00000515351 TNRQ92752 1358 aa19.03■□□□□ 0.64
PCDH1-208ENST00000515351 UPF2Q9HAU5 1272 aaKnown RBP19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms