RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TRPM3Q9HCF6 1732 aaPredicted RBP19.85■□□□□ 0.77
NUP54-216ENST00000514901 COL22A1Q8NFW1 1626 aaPredicted RBP19.84■□□□□ 0.77
NUP54-216ENST00000514901 MED1Q15648 1581 aaPredicted RBP19.84■□□□□ 0.77
NUP54-216ENST00000514901 ABTB2Q8N961 1025 aa19.84■□□□□ 0.77
NUP54-216ENST00000514901 KTN1Q86UP2 1357 aaKnown RBP19.83■□□□□ 0.77
NUP54-216ENST00000514901 PHF23Q9BUL5 403 aaPredicted RBP19.82■□□□□ 0.76
NUP54-216ENST00000514901 TTC21AQ8NDW8 1320 aa19.81■□□□□ 0.76
NUP54-216ENST00000514901 HAP1P54257 671 aaPredicted RBP19.81■□□□□ 0.76
NUP54-216ENST00000514901 SSH2Q76I76 1423 aa19.81■□□□□ 0.76
NUP54-216ENST00000514901 ALS2Q96Q42 1657 aa19.81■□□□□ 0.76
NUP54-216ENST00000514901 TTC21BQ7Z4L5 1316 aa19.8■□□□□ 0.76
NUP54-216ENST00000514901 NLRP13Q86W25 1043 aa19.8■□□□□ 0.76
NUP54-216ENST00000514901 AKAP12Q02952 1782 aa19.8■□□□□ 0.76
NUP54-216ENST00000514901 LRP6O75581 1613 aa19.8■□□□□ 0.76
NUP54-216ENST00000514901 CD163L1Q9NR16 1453 aa19.79■□□□□ 0.76
NUP54-216ENST00000514901 ADAMTS2O95450 1211 aa19.79■□□□□ 0.76
NUP54-216ENST00000514901 ANKRD36BQ8N2N9 1353 aa19.79■□□□□ 0.76
NUP54-216ENST00000514901 CABLES1Q8TDN4 633 aa19.78■□□□□ 0.76
NUP54-216ENST00000514901 A0A1W2PP64 1363 aa19.78■□□□□ 0.76
NUP54-216ENST00000514901 POLR3GLQ9BT43 218 aa19.77■□□□□ 0.76
NUP54-216ENST00000514901 EDC4Q6P2E9 1401 aaKnown RBP19.76■□□□□ 0.75
NUP54-216ENST00000514901 NLRP6P59044 892 aa19.76■□□□□ 0.75
NUP54-216ENST00000514901 NUTM2GQ5VZR2 741 aa19.76■□□□□ 0.75
NUP54-216ENST00000514901 NGLY1Q96IV0 654 aa19.76■□□□□ 0.75
NUP54-216ENST00000514901 PLEKHG5O94827 1062 aa19.75■□□□□ 0.75
NUP54-216ENST00000514901 C8orf37Q96NL8 207 aa19.75■□□□□ 0.75
NUP54-216ENST00000514901 C11orf95C9JLR9 678 aaPredicted RBP19.74■□□□□ 0.75
NUP54-216ENST00000514901 ZNF772Q68DY9 489 aaPredicted RBP19.74■□□□□ 0.75
NUP54-216ENST00000514901 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.74■□□□□ 0.75
NUP54-216ENST00000514901 USP19O94966 1318 aa19.74■□□□□ 0.75
NUP54-216ENST00000514901 MON2Q7Z3U7 1717 aa19.73■□□□□ 0.75
NUP54-216ENST00000514901 FNBP4Q8N3X1 1017 aaPredicted RBP19.72■□□□□ 0.75
NUP54-216ENST00000514901 GCP02774 474 aa19.71■□□□□ 0.75
NUP54-216ENST00000514901 AFF2P51816 1311 aa19.71■□□□□ 0.75
NUP54-216ENST00000514901 KIF7Q2M1P5 1343 aa19.71■□□□□ 0.75
NUP54-216ENST00000514901 USP31Q70CQ4 1352 aa19.7■□□□□ 0.74
NUP54-216ENST00000514901 KCNH5Q8NCM2 988 aa19.7■□□□□ 0.74
NUP54-216ENST00000514901 RGS17Q9UGC6 210 aaPredicted RBP19.7■□□□□ 0.74
NUP54-216ENST00000514901 NRKQ7Z2Y5 1582 aa19.7■□□□□ 0.74
NUP54-216ENST00000514901 NME9Q86XW9 330 aa19.69■□□□□ 0.74
NUP54-216ENST00000514901 FAM83GA6ND36 823 aa19.68■□□□□ 0.74
NUP54-216ENST00000514901 CARD14Q9BXL6 1004 aa19.68■□□□□ 0.74
NUP54-216ENST00000514901 MARF1Q9Y4F3 1742 aaKnown RBP19.68■□□□□ 0.74
NUP54-216ENST00000514901 PANK3Q9H999 370 aa19.67■□□□□ 0.74
NUP54-216ENST00000514901 PRDM11Q9NQV5 511 aa19.67■□□□□ 0.74
NUP54-216ENST00000514901 USP21Q9UK80 565 aa19.67■□□□□ 0.74
NUP54-216ENST00000514901 PIK3C2AO00443 1686 aa19.67■□□□□ 0.74
NUP54-216ENST00000514901 ABCA3Q99758 1704 aa19.67■□□□□ 0.74
NUP54-216ENST00000514901 MYOM1P52179 1685 aa19.66■□□□□ 0.74
NUP54-216ENST00000514901 ZC3H6P61129 1189 aaKnown RBP19.66■□□□□ 0.74
NUP54-216ENST00000514901 CPDO75976 1380 aa19.66■□□□□ 0.74
NUP54-216ENST00000514901 CRYBG1Q9Y4K1 1723 aa19.65■□□□□ 0.74
NUP54-216ENST00000514901 COG3Q96JB2 828 aa19.65■□□□□ 0.74
NUP54-216ENST00000514901 CCDC7Q96M83 1385 aa19.65■□□□□ 0.74
NUP54-216ENST00000514901 FYB1O15117 783 aa19.64■□□□□ 0.73
NUP54-216ENST00000514901 UNC5CLQ8IV45 518 aa19.64■□□□□ 0.73
NUP54-216ENST00000514901 ZRANB1Q9UGI0 708 aa19.64■□□□□ 0.73
NUP54-216ENST00000514901 KIAA0232Q92628 1395 aa19.64■□□□□ 0.73
NUP54-216ENST00000514901 SLIT3O75094 1523 aa19.64■□□□□ 0.73
NUP54-216ENST00000514901 PHRF1Q9P1Y6 1649 aaKnown RBP19.63■□□□□ 0.73
NUP54-216ENST00000514901 SLIT2O94813 1529 aa19.63■□□□□ 0.73
NUP54-216ENST00000514901 NSD3Q9BZ95 1437 aa19.63■□□□□ 0.73
NUP54-216ENST00000514901 CGNL1Q0VF96 1302 aa19.63■□□□□ 0.73
NUP54-216ENST00000514901 WASHC2AQ641Q2 1341 aa19.63■□□□□ 0.73
NUP54-216ENST00000514901 QTRT2Q9H974 415 aaKnown RBP19.63■□□□□ 0.73
NUP54-216ENST00000514901 TRPC5Q9UL62 973 aaPredicted RBP19.63■□□□□ 0.73
NUP54-216ENST00000514901 POTEAQ6S8J7 498 aa19.62■□□□□ 0.73
NUP54-216ENST00000514901 BCL9LQ86UU0 1499 aa19.61■□□□□ 0.73
NUP54-216ENST00000514901 BTG4Q9NY30 223 aa19.61■□□□□ 0.73
NUP54-216ENST00000514901 OVOS2A0A0J9YW53 1432 aa19.6■□□□□ 0.73
NUP54-216ENST00000514901 OVOS2Q6IE36 1432 aa19.6■□□□□ 0.73
NUP54-216ENST00000514901 COL14A1Q05707 1796 aaKnown RBP19.6■□□□□ 0.73
NUP54-216ENST00000514901 USP54Q70EL1 1684 aa19.6■□□□□ 0.73
NUP54-216ENST00000514901 ARHGEF25Q86VW2 580 aa19.6■□□□□ 0.73
NUP54-216ENST00000514901 KNSTRNQ9Y448 316 aa19.6■□□□□ 0.73
NUP54-216ENST00000514901 RXRBP28702 533 aa19.59■□□□□ 0.73
NUP54-216ENST00000514901 CHRNA2Q15822 529 aa19.59■□□□□ 0.73
NUP54-216ENST00000514901 GGNBP2Q9H3C7 697 aa19.59■□□□□ 0.73
NUP54-216ENST00000514901 AATKQ6ZMQ8 1374 aa19.58■□□□□ 0.73
NUP54-216ENST00000514901 SOX12O15370 315 aa19.58■□□□□ 0.72
NUP54-216ENST00000514901 RBM6P78332 1123 aaKnown RBP19.58■□□□□ 0.72
NUP54-216ENST00000514901 NWD2Q9ULI1 1742 aa19.58■□□□□ 0.72
NUP54-216ENST00000514901 EVA1CP58658 441 aa19.57■□□□□ 0.72
NUP54-216ENST00000514901 VPS72Q15906 364 aa19.57■□□□□ 0.72
NUP54-216ENST00000514901 ATRNO75882 1429 aa19.57■□□□□ 0.72
NUP54-216ENST00000514901 ZBTB7CA1YPR0 619 aa19.55■□□□□ 0.72
NUP54-216ENST00000514901 GJD4Q96KN9 370 aaPredicted RBP19.55■□□□□ 0.72
NUP54-216ENST00000514901 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.55■□□□□ 0.72
NUP54-216ENST00000514901 NFAT5O94916 1531 aa19.55■□□□□ 0.72
NUP54-216ENST00000514901 NSD2O96028 1365 aa19.55■□□□□ 0.72
NUP54-216ENST00000514901 PLCH1Q4KWH8 1693 aa19.54■□□□□ 0.72
NUP54-216ENST00000514901 PER1O15534 1290 aaPredicted RBP19.53■□□□□ 0.72
NUP54-216ENST00000514901 KIF20BQ96Q89 1820 aa19.53■□□□□ 0.72
NUP54-216ENST00000514901 CCDC9Q9Y3X0 531 aaKnown RBP19.52■□□□□ 0.72
NUP54-216ENST00000514901 STRN4Q9NRL3 753 aa19.51■□□□□ 0.71
NUP54-216ENST00000514901 CAMTA1Q9Y6Y1 1673 aa19.51■□□□□ 0.71
NUP54-216ENST00000514901 ABCC6O95255 1503 aa19.51■□□□□ 0.71
NUP54-216ENST00000514901 AMER1Q5JTC6 1135 aaPredicted RBP19.5■□□□□ 0.71
NUP54-216ENST00000514901 ILDR2Q71H61 639 aa19.5■□□□□ 0.71
NUP54-216ENST00000514901 IP6K1Q92551 441 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms