RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 PDCL2Q8N4E4 241 aa13.58□□□□□ -0.24
TCOF1-211ENST00000513346 WDR62O43379 1518 aa13.58□□□□□ -0.24
TCOF1-211ENST00000513346 C8orf34Q49A92 452 aa13.58□□□□□ -0.24
TCOF1-211ENST00000513346 TNPO1Q92973 898 aaKnown RBP13.57□□□□□ -0.24
TCOF1-211ENST00000513346 PRAM1Q96QH2 718 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 ANO2Q9NQ90 1003 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 MCM2P49736 904 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 MVPQ14764 893 aaKnown RBP13.57□□□□□ -0.24
TCOF1-211ENST00000513346 TBC1D32Q96NH3 1257 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 RPGRIP1LQ68CZ1 1315 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 GPRASP1Q5JY77 1395 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 NLRP6P59044 892 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 NUTM2GQ5VZR2 741 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 PTPRKQ15262 1439 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 MCM5P33992 734 aa13.57□□□□□ -0.24
TCOF1-211ENST00000513346 ZHX1Q9UKY1 873 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-211ENST00000513346 KIF21AQ7Z4S6 1674 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 CBX1P83916 185 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 FBXO31Q5XUX0 539 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-211ENST00000513346 GCC1Q96CN9 775 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 SMC3Q9UQE7 1217 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 ERBINQ96RT1 1412 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 TPD52L1Q16890 204 aaPredicted RBP13.56□□□□□ -0.24
TCOF1-211ENST00000513346 THOC2Q8NI27 1593 aaKnown RBP13.56□□□□□ -0.24
TCOF1-211ENST00000513346 HSP90B1P14625 803 aaKnown RBP13.56□□□□□ -0.24
TCOF1-211ENST00000513346 NEXNQ0ZGT2 675 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 NOM1Q5C9Z4 860 aaKnown RBP13.56□□□□□ -0.24
TCOF1-211ENST00000513346 HOMER1Q86YM7 354 aa13.56□□□□□ -0.24
TCOF1-211ENST00000513346 MPNDQ8N594 471 aa13.55□□□□□ -0.24
TCOF1-211ENST00000513346 SETQ01105 290 aaPredicted RBP13.55□□□□□ -0.24
TCOF1-211ENST00000513346 CCAR2Q8N163 923 aaKnown RBP13.55□□□□□ -0.24
TCOF1-211ENST00000513346 NEK4P51957 841 aa13.55□□□□□ -0.24
TCOF1-211ENST00000513346 RAPGEF4Q8WZA2 1011 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 FAM184AQ8NB25 1140 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 NECTIN2Q92692 538 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 ASXL2Q76L83 1435 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 H3BQV1 296 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 IFFO2Q5TF58 517 aa13.54□□□□□ -0.24
TCOF1-211ENST00000513346 CWC15Q9P013 229 aaKnown RBP13.54□□□□□ -0.24
TCOF1-211ENST00000513346 G3V3G9 751 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 DCAF8Q5TAQ9 597 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 FANCAO15360 1455 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 VPS37CA5D8V6 355 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-211ENST00000513346 SF3A1Q15459 793 aaKnown RBP13.53□□□□□ -0.24
TCOF1-211ENST00000513346 WDR63Q8IWG1 891 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 MNS1Q8NEH6 495 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 BICD2Q8TD16 824 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 CCDC112Q8NEF3 446 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 SYTL4Q96C24 671 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-211ENST00000513346 TRIM5Q9C035 493 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 C9orf78Q9NZ63 289 aaPredicted RBP13.53□□□□□ -0.24
TCOF1-211ENST00000513346 KIF14Q15058 1648 aa13.53□□□□□ -0.24
TCOF1-211ENST00000513346 PHF23Q9BUL5 403 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-211ENST00000513346 LRPPRCP42704 1394 aaKnown RBP13.52□□□□□ -0.24
TCOF1-211ENST00000513346 CT47B1P0C2W7 299 aaPredicted RBP13.52□□□□□ -0.24
TCOF1-211ENST00000513346 EXOSC9Q06265 439 aaKnown RBP13.52□□□□□ -0.24
TCOF1-211ENST00000513346 NLRP2Q9NX02 1062 aa13.52□□□□□ -0.24
TCOF1-211ENST00000513346 SYCE3A1L190 88 aa13.52□□□□□ -0.25
TCOF1-211ENST00000513346 GNAI1P63096 354 aa13.52□□□□□ -0.25
TCOF1-211ENST00000513346 CHD1LQ86WJ1 897 aa13.52□□□□□ -0.25
TCOF1-211ENST00000513346 BCL11BQ9C0K0 894 aaPredicted RBP13.52□□□□□ -0.25
TCOF1-211ENST00000513346 RNF123Q5XPI4 1314 aa13.52□□□□□ -0.25
TCOF1-211ENST00000513346 RPRD2Q5VT52 1461 aaKnown RBP13.51□□□□□ -0.25
TCOF1-211ENST00000513346 SPC24Q8NBT2 197 aa13.51□□□□□ -0.25
TCOF1-211ENST00000513346 GPATCH8Q9UKJ3 1502 aaKnown RBP13.51□□□□□ -0.25
TCOF1-211ENST00000513346 FKBP5Q13451 457 aaPredicted RBP13.51□□□□□ -0.25
TCOF1-211ENST00000513346 HSPA2P54652 639 aa13.51□□□□□ -0.25
TCOF1-211ENST00000513346 OFD1O75665 1012 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 IGHDP01880 384 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 ATF7IPQ6VMQ6 1270 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 TSPYL4Q9UJ04 414 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 SSFA2P28290 1259 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 KLHL40Q2TBA0 621 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 ESCO1Q5FWF5 840 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 RUFY2Q8WXA3 655 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 CABP1Q9NZU7 370 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 ZSCAN21Q9Y5A6 473 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-211ENST00000513346 ZKSCAN1P17029 563 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-211ENST00000513346 ABTB2Q8N961 1025 aa13.5□□□□□ -0.25
TCOF1-211ENST00000513346 NKTRP30414 1462 aaKnown RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 DDX58O95786 925 aaKnown RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 TOMM22Q9NS69 142 aa13.49□□□□□ -0.25
TCOF1-211ENST00000513346 NOB1Q9ULX3 412 aaKnown RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 NUTM2BA6NNL0 878 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 NUTM2EB1AL46 878 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 NUTM2AQ8IVF1 878 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-211ENST00000513346 CCDC34Q96HJ3 373 aa13.49□□□□□ -0.25
TCOF1-211ENST00000513346 PRKAR2BP31323 418 aa13.48□□□□□ -0.25
TCOF1-211ENST00000513346 CDK19Q9BWU1 502 aa13.48□□□□□ -0.25
TCOF1-211ENST00000513346 WWC1Q8IX03 1113 aa13.48□□□□□ -0.25
TCOF1-211ENST00000513346 WDR33Q9C0J8 1336 aaKnown RBP13.48□□□□□ -0.25
TCOF1-211ENST00000513346 CCDC192P0DO97 292 aa13.48□□□□□ -0.25
TCOF1-211ENST00000513346 PRIMPOLQ96LW4 560 aa13.47□□□□□ -0.25
TCOF1-211ENST00000513346 NUP153P49790 1475 aaKnown RBP13.47□□□□□ -0.25
TCOF1-211ENST00000513346 UGGT2Q9NYU1 1516 aa13.47□□□□□ -0.25
TCOF1-211ENST00000513346 FIBPO43427 364 aa13.47□□□□□ -0.25
TCOF1-211ENST00000513346 PPP4R3BQ5MIZ7 849 aa13.47□□□□□ -0.25
TCOF1-211ENST00000513346 CGNQ9P2M7 1197 aaKnown RBP13.46□□□□□ -0.25
TCOF1-211ENST00000513346 WDR7Q9Y4E6 1490 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms