RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CABP1Q9NZU7 370 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 NEURL4Q96JN8 1562 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 HMOX1P09601 288 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 FAM43AQ8N2R8 423 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 IPO8O15397 1037 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 HSCBQ8IWL3 235 aa11.66□□□□□ -0.54
LIMCH1-215ENST00000512632 PRKAR2BP31323 418 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 L1TD1Q5T7N2 865 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 PUS7Q96PZ0 661 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 KIDINS220Q9ULH0 1771 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 PANK2Q9BZ23 570 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 NSD2O96028 1365 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 ANKRD45Q5TZF3 282 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 FOXD4L1Q9NU39 408 aa11.65□□□□□ -0.54
LIMCH1-215ENST00000512632 SETBP1Q9Y6X0 1596 aa11.65□□□□□ -0.55
LIMCH1-215ENST00000512632 QRICH2Q9H0J4 1663 aa11.65□□□□□ -0.55
LIMCH1-215ENST00000512632 GOLGA6L3A6NEY3 463 aa11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 TRAK2O60296 914 aa11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 XRCC6P12956 609 aaKnown RBP eCLIP11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 TULP4Q9NRJ4 1543 aa11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 RRAGDQ9NQL2 400 aaPredicted RBP11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 MYO3AQ8NEV4 1616 aa11.64□□□□□ -0.55
LIMCH1-215ENST00000512632 ABCC11Q96J66 1382 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 NCBP3Q53F19 620 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 HDGFL2Q7Z4V5 671 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 CDK19Q9BWU1 502 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 PHACTR3Q96KR7 559 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 KIF16BQ96L93 1317 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 LMTK2Q8IWU2 1503 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 CHD1LQ86WJ1 897 aa11.63□□□□□ -0.55
LIMCH1-215ENST00000512632 PRKCSHP14314 528 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 STAG3Q9UJ98 1225 aa11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 IFT172Q9UG01 1749 aa11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 NUCB1Q02818 461 aa11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 FBXO31Q5XUX0 539 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 TSPYL6Q8N831 410 aa11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 ZMYM3Q14202 1370 aa11.62□□□□□ -0.55
LIMCH1-215ENST00000512632 IL16Q14005 1332 aa11.61□□□□□ -0.55
LIMCH1-215ENST00000512632 HSP90AA1P07900 732 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-215ENST00000512632 HSP90AB1P08238 724 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-215ENST00000512632 WAPLQ7Z5K2 1190 aa11.61□□□□□ -0.55
LIMCH1-215ENST00000512632 FCHSD2O94868 740 aa11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 PNNQ9H307 717 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 GLI2P10070 1586 aa11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 POGZQ7Z3K3 1410 aa11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 RBM42Q9BTD8 480 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 POLKQ9UBT6 870 aa11.6□□□□□ -0.55
LIMCH1-215ENST00000512632 SLC52A1Q9NWF4 448 aa11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 VIRMAQ69YN4 1812 aaKnown RBP11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 EMILIN1Q9Y6C2 1016 aa11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 ATAD2Q6PL18 1390 aa11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 ZBTB7BO15156 539 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 VAMP4O75379 141 aa11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 ZNF692Q9BU19 519 aaPredicted RBP11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 ZRANB1Q9UGI0 708 aa11.59□□□□□ -0.55
LIMCH1-215ENST00000512632 ABCC3O15438 1527 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 ALDH1L2Q3SY69 923 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 RSPH6AQ9H0K4 717 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 FRMPD1Q5SYB0 1578 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 PPLO60437 1756 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 FSD2A1L4K1 749 aa11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 CD2BP2O95400 341 aaKnown RBP11.58□□□□□ -0.56
LIMCH1-215ENST00000512632 MLH3Q9UHC1 1453 aa11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 RBM25P49756 843 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 TNPO1Q92973 898 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 DCTN1Q14203 1278 aa11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 NFE2L2Q16236 605 aa11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 MRPL50Q8N5N7 158 aaKnown RBP11.57□□□□□ -0.56
LIMCH1-215ENST00000512632 FAM83GA6ND36 823 aa11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 SIRT2Q8IXJ6 389 aa11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 BMP2KLQ5H9B9 411 aa11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 ADGRB2O60241 1585 aa11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 TBC1D9Q6ZT07 1266 aa11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 COL3A1P02461 1466 aaPredicted RBP11.56□□□□□ -0.56
LIMCH1-215ENST00000512632 C8orf58Q8NAV2 365 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 MBIPQ9NS73 344 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 TWISTNBQ3B726 338 aaPredicted RBP11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 NME9Q86XW9 330 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 ZC3H13Q5T200 1668 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 DDX11L8A8MPP1 907 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 APBB1O00213 710 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 KIF2CQ99661 725 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 NEXMIFQ5QGS0 1516 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 PPIP5K1Q6PFW1 1433 aa11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 YTHDC2Q9H6S0 1430 aaKnown RBP11.55□□□□□ -0.56
LIMCH1-215ENST00000512632 CAMSAP1Q5T5Y3 1602 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 RRS1Q15050 365 aaKnown RBP11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 NCKAP5LQ9HCH0 1330 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 USP32Q8NFA0 1604 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 PNPLA6Q8IY17 1366 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 SNX21Q969T3 373 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 GCC1Q96CN9 775 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 CD163L1Q9NR16 1453 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 GNAI1P63096 354 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 GRPEL1Q9HAV7 217 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 MRE11P49959 708 aa11.54□□□□□ -0.56
LIMCH1-215ENST00000512632 C16orf71Q8IYS4 520 aaPredicted RBP11.53□□□□□ -0.56
LIMCH1-215ENST00000512632 ARHGEF28Q8N1W1 1705 aaKnown RBP11.53□□□□□ -0.56
LIMCH1-215ENST00000512632 GAS2L3Q86XJ1 694 aa11.53□□□□□ -0.56
LIMCH1-215ENST00000512632 DDIT3P35638 169 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms