RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.62□□□□□ -0.07
LIMCH1-213ENST00000511496 RRP7AQ9Y3A4 280 aaKnown RBP14.62□□□□□ -0.07
LIMCH1-213ENST00000511496 V9GYY5 206 aaPredicted RBP14.62□□□□□ -0.07
LIMCH1-213ENST00000511496 C10orf67Q8IYJ2 551 aa14.62□□□□□ -0.07
LIMCH1-213ENST00000511496 GYS2P54840 703 aa14.61□□□□□ -0.07
LIMCH1-213ENST00000511496 C16orf45Q96MC5 204 aaPredicted RBP14.61□□□□□ -0.07
LIMCH1-213ENST00000511496 YY1AP1Q9H869 796 aa14.61□□□□□ -0.07
LIMCH1-213ENST00000511496 FAM193AP78312 1265 aa14.61□□□□□ -0.07
LIMCH1-213ENST00000511496 KIAA1524Q8TCG1 905 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 ZNF592Q92610 1267 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 ANKRD30AQ9BXX3 1397 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 ZNF608Q9ULD9 1512 aaPredicted RBP14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 NPHP1O15259 732 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 SRPK2P78362 688 aaKnown RBP14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 LMOD3Q0VAK6 560 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 RASSF4Q9H2L5 321 aa14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 BCCIPQ9P287 314 aaKnown RBP eCLIP14.6□□□□□ -0.07
LIMCH1-213ENST00000511496 DHX16O60231 1041 aaKnown RBP14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 MBD3O95983 291 aa14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 NOL10Q9BSC4 688 aaKnown RBP14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 CAMSAP2Q08AD1 1489 aa14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 FGD5Q6ZNL6 1462 aa14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 MVPQ14764 893 aaKnown RBP14.59□□□□□ -0.07
LIMCH1-213ENST00000511496 MBD5Q9P267 1494 aa14.58□□□□□ -0.07
LIMCH1-213ENST00000511496 U2SURPO15042 1029 aaKnown RBP14.58□□□□□ -0.08
LIMCH1-213ENST00000511496 HCLS1P14317 486 aaPredicted RBP14.58□□□□□ -0.08
LIMCH1-213ENST00000511496 RTF1Q92541 710 aaKnown RBP14.58□□□□□ -0.08
LIMCH1-213ENST00000511496 ITPRIPQ8IWB1 547 aa14.58□□□□□ -0.08
LIMCH1-213ENST00000511496 BANK1Q8NDB2 785 aa14.58□□□□□ -0.08
LIMCH1-213ENST00000511496 GDPD2Q9HCC8 539 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 TRIM66O15016 1216 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 CYP2E1P05181 493 aaPredicted RBP14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 GCC2Q8IWJ2 1684 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 RALGAPBQ86X10 1494 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 CCDC112Q8NEF3 446 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 SYAP1Q96A49 352 aaPredicted RBP14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 SIRT1Q96EB6 747 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 ZDHHC9Q9Y397 364 aa14.57□□□□□ -0.08
LIMCH1-213ENST00000511496 RGL3Q3MIN7 710 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 TBC1D9Q6ZT07 1266 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 CTTNBP2Q8WZ74 1663 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 KCNF1Q9H3M0 494 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 IFT57Q9NWB7 429 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 NOP2P46087 812 aaKnown RBP14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 KMT5BQ4FZB7 885 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 NEK11Q8NG66 645 aa14.56□□□□□ -0.08
LIMCH1-213ENST00000511496 KIF14Q15058 1648 aa14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 DZIP1LQ8IYY4 767 aaKnown RBP14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 GTF3C6Q969F1 213 aa14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 DISP3Q9P2K9 1392 aa14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 TNNT1P13805 278 aa14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 AXDND1Q5T1B0 1012 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 MYCBPQ99417 103 aaPredicted RBP14.55□□□□□ -0.08
LIMCH1-213ENST00000511496 CYP2C19P33261 490 aa14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 ZNF622Q969S3 477 aaKnown RBP eCLIP14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 SYT10Q6XYQ8 523 aa14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 CDCA8Q53HL2 280 aa14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 ZNF644Q9H582 1327 aaPredicted RBP14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 CCDC144AA2RUR9 1427 aa14.54□□□□□ -0.08
LIMCH1-213ENST00000511496 GOLGA6L6A8MZA4 724 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 NPC1L1Q9UHC9 1359 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 ANKRD45Q5TZF3 282 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 ICE2Q659A1 982 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 ZNF397Q8NF99 534 aaPredicted RBP14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 SMC4Q9NTJ3 1288 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 SMTNL1A8MU46 457 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 PHF14O94880 888 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 UVSSAQ2YD98 709 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 ZKSCAN2Q63HK3 967 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 FAM184AQ8NB25 1140 aa14.53□□□□□ -0.08
LIMCH1-213ENST00000511496 POLR3GO15318 223 aaPredicted RBP14.52□□□□□ -0.08
LIMCH1-213ENST00000511496 GADD45BO75293 160 aaPredicted RBP14.52□□□□□ -0.08
LIMCH1-213ENST00000511496 TMF1P82094 1093 aa14.52□□□□□ -0.08
LIMCH1-213ENST00000511496 DRC1Q96MC2 740 aa14.52□□□□□ -0.08
LIMCH1-213ENST00000511496 KDM4AO75164 1064 aa14.52□□□□□ -0.09
LIMCH1-213ENST00000511496 RABEP1Q15276 862 aa14.52□□□□□ -0.09
LIMCH1-213ENST00000511496 CWC22Q9HCG8 908 aaKnown RBP14.52□□□□□ -0.09
LIMCH1-213ENST00000511496 RBM6P78332 1123 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 KRBA2Q6ZNG9 492 aa14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 EFCAB5A4FU69 1503 aa14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 CT47A1Q5JQC4 288 aaPredicted RBP14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 CHD1LQ86WJ1 897 aa14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 EPRSP07814 1512 aaKnown RBP14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 KIAA1107Q9UPP5 1409 aa14.51□□□□□ -0.09
LIMCH1-213ENST00000511496 PTGS1P23219 599 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 HDAC1Q13547 482 aaPredicted RBP14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 FBXO38Q6PIJ6 1188 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 NCAPGQ9BPX3 1015 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 E9PCH4 1651 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 MYO1CO00159 1063 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 SMARCA5O60264 1052 aaPredicted RBP14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 SYCP1Q15431 976 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 LCMT1Q9UIC8 334 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 SART3Q15020 963 aaKnown RBP14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 BMP2KLQ5H9B9 411 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 DRC7Q8IY82 874 aa14.5□□□□□ -0.09
LIMCH1-213ENST00000511496 CASQ1P31415 396 aa14.49□□□□□ -0.09
LIMCH1-213ENST00000511496 SUPT6HQ7KZ85 1726 aaKnown RBP14.49□□□□□ -0.09
LIMCH1-213ENST00000511496 TPD52L1Q16890 204 aaPredicted RBP14.49□□□□□ -0.09
LIMCH1-213ENST00000511496 ZNF215Q9UL58 517 aaPredicted RBP14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms