RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PPM1EQ8WY54 764 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 KTN1Q86UP2 1357 aaKnown RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 ANKLE2Q86XL3 938 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 BBXQ8WY36 941 aaPredicted RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 NAT10Q9H0A0 1025 aaKnown RBP4.31□□□□□ -1.72
USP53-205ENST00000509769 BIVM-ERCC5R4GMW8 1640 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 UGGT2Q9NYU1 1516 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 JCADQ9P266 1359 aa4.31□□□□□ -1.72
USP53-205ENST00000509769 A0A1B0GUA9 196 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 PIP4K2AP48426 406 aaPredicted RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 TERF1P54274 439 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 DNAJC21Q5F1R6 531 aaKnown RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 RSPH4AQ5TD94 716 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 JAKMIP3Q5VZ66 844 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 FAM184AQ8NB25 1140 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 SHANK2Q9UPX8 1470 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 YY1P25490 414 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 CEP120Q8N960 986 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 TCOF1Q13428 1488 aaKnown RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 SENP3-EIF4A1A0A087X0R7 540 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 MAP9Q49MG5 647 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 WWC1Q8IX03 1113 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 CCDC47Q96A33 483 aaKnown RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 CAMSAP1Q5T5Y3 1602 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 OS9Q13438 667 aaPredicted RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 DNAAF4Q8WXU2 420 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 PRIMPOLQ96LW4 560 aa4.3□□□□□ -1.72
USP53-205ENST00000509769 SLKQ9H2G2 1235 aaPredicted RBP4.3□□□□□ -1.72
USP53-205ENST00000509769 TUBBP07437 444 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 DDX10Q13206 875 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 CT47A1Q5JQC4 288 aaPredicted RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 SASS6Q6UVJ0 657 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 GIGYF2Q6Y7W6 1299 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 ANKRD18BA2A2Z9 1011 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 GOLIM4O00461 696 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 GNL2Q13823 731 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 FAM161AQ3B820 660 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 CDK5RAP3Q96JB5 506 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 REREQ9P2R6 1566 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 BECN2A8MW95 431 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 E9PSI1 815 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 CCDC175P0C221 793 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 EFCAB2Q5VUJ9 269 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 DDX46Q7L014 1031 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 CENPQQ7L2Z9 268 aaPredicted RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 DAAM2Q86T65 1068 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 THEMISQ8N1K5 641 aaPredicted RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 FAM114A2Q9NRY5 505 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 SATB2Q9UPW6 733 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 KDM5DQ9BY66 1539 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 KIF14Q15058 1648 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 FGD1P98174 961 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 SMC1AQ14683 1233 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 PAF1Q8N7H5 531 aa4.29□□□□□ -1.72
USP53-205ENST00000509769 IPO4Q8TEX9 1081 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 LUC7LQ9NQ29 371 aaKnown RBP4.29□□□□□ -1.72
USP53-205ENST00000509769 FAM135AQ9P2D6 1515 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 TSPY4P0CV99 314 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 TSPY10P0CW01 314 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 NUTM2BA6NNL0 878 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 NUTM2EB1AL46 878 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 NEMFO60524 1076 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 SRPK2P78362 688 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 ENOX2Q16206 610 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 NUTM2DQ5VT03 806 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 NUTM2AQ8IVF1 878 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 ZMYND15Q9H091 742 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 NUDCQ9Y266 331 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 FILIP1Q7Z7B0 1213 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 RMDN2Q96LZ7 410 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 MYCBPQ99417 103 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 TACO1Q9BSH4 297 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 POLE3Q9NRF9 147 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 DDX49Q9Y6V7 483 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 FAM135BQ49AJ0 1406 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 KDM5CP41229 1560 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 CARMIL1Q5VZK9 1371 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 NINLQ9Y2I6 1382 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 MNAT1P51948 309 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 DZIP1Q86YF9 867 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 ZMAT2Q96NC0 199 aaKnown RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 CIZ1Q9ULV3 898 aaPredicted RBP4.28□□□□□ -1.72
USP53-205ENST00000509769 LIMCH1Q9UPQ0 1083 aa4.28□□□□□ -1.72
USP53-205ENST00000509769 CCDC112Q8NEF3 446 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 ZNHIT6Q9NWK9 470 aaKnown RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 STRCQ7RTU9 1775 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 FGD6Q6ZV73 1430 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 MROH2AA6NES4 1674 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 ZNF335Q9H4Z2 1342 aaPredicted RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 CT47B1P0C2W7 299 aaPredicted RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 IRX6P78412 446 aaPredicted RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 HOMER1Q86YM7 354 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 DDX12PQ92771 950 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 SMARCE1Q969G3 411 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 RAPGEF2Q9Y4G8 1499 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 ROCK2O75116 1388 aaKnown RBP4.27□□□□□ -1.73
USP53-205ENST00000509769 AATKQ6ZMQ8 1374 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 MCM2P49736 904 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 MAP3K7CLP57077 242 aa4.27□□□□□ -1.73
USP53-205ENST00000509769 ZSCAN30Q86W11 494 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms