RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 TTC21AQ8NDW8 1320 aa20.37■□□□□ 0.85
RNF4-213ENST00000509388 KNSTRNQ9Y448 316 aa20.37■□□□□ 0.85
RNF4-213ENST00000509388 NHSL1Q5SYE7 1610 aa20.36■□□□□ 0.85
RNF4-213ENST00000509388 DDX10Q13206 875 aaKnown RBP20.36■□□□□ 0.85
RNF4-213ENST00000509388 PHLPP1O60346 1717 aa20.36■□□□□ 0.85
RNF4-213ENST00000509388 EDC4Q6P2E9 1401 aaKnown RBP20.36■□□□□ 0.85
RNF4-213ENST00000509388 PLEKHG5O94827 1062 aa20.35■□□□□ 0.85
RNF4-213ENST00000509388 CARD14Q9BXL6 1004 aa20.35■□□□□ 0.85
RNF4-213ENST00000509388 TNS3Q68CZ2 1445 aa20.35■□□□□ 0.85
RNF4-213ENST00000509388 ARHGEF10O15013 1369 aa20.34■□□□□ 0.85
RNF4-213ENST00000509388 NSD3Q9BZ95 1437 aa20.34■□□□□ 0.85
RNF4-213ENST00000509388 NLRP6P59044 892 aa20.33■□□□□ 0.85
RNF4-213ENST00000509388 NUTM2GQ5VZR2 741 aa20.33■□□□□ 0.85
RNF4-213ENST00000509388 NLRP13Q86W25 1043 aa20.33■□□□□ 0.85
RNF4-213ENST00000509388 JCADQ9P266 1359 aa20.33■□□□□ 0.84
RNF4-213ENST00000509388 HAP1P54257 671 aaPredicted RBP20.32■□□□□ 0.84
RNF4-213ENST00000509388 SSH2Q76I76 1423 aa20.32■□□□□ 0.84
RNF4-213ENST00000509388 CGNL1Q0VF96 1302 aa20.31■□□□□ 0.84
RNF4-213ENST00000509388 ILDR1Q86SU0 546 aaPredicted RBP20.31■□□□□ 0.84
RNF4-213ENST00000509388 NME9Q86XW9 330 aa20.31■□□□□ 0.84
RNF4-213ENST00000509388 MYOM1P52179 1685 aa20.31■□□□□ 0.84
RNF4-213ENST00000509388 COL16A1Q07092 1604 aaPredicted RBP20.3■□□□□ 0.84
RNF4-213ENST00000509388 COG3Q96JB2 828 aa20.29■□□□□ 0.84
RNF4-213ENST00000509388 AKAP12Q02952 1782 aa20.29■□□□□ 0.84
RNF4-213ENST00000509388 FYB1O15117 783 aa20.28■□□□□ 0.84
RNF4-213ENST00000509388 PNPLA6Q8IY17 1366 aa20.28■□□□□ 0.84
RNF4-213ENST00000509388 GGNBP2Q9H3C7 697 aa20.27■□□□□ 0.84
RNF4-213ENST00000509388 MON2Q7Z3U7 1717 aa20.27■□□□□ 0.83
RNF4-213ENST00000509388 NUTM2BA6NNL0 878 aaPredicted RBP20.26■□□□□ 0.83
RNF4-213ENST00000509388 NUTM2EB1AL46 878 aaPredicted RBP20.26■□□□□ 0.83
RNF4-213ENST00000509388 PER1O15534 1290 aaPredicted RBP20.26■□□□□ 0.83
RNF4-213ENST00000509388 CNGB1Q14028 1251 aaPredicted RBP20.26■□□□□ 0.83
RNF4-213ENST00000509388 NUTM2AQ8IVF1 878 aaPredicted RBP20.26■□□□□ 0.83
RNF4-213ENST00000509388 CABLES1Q8TDN4 633 aa20.26■□□□□ 0.83
RNF4-213ENST00000509388 ZRANB1Q9UGI0 708 aa20.26■□□□□ 0.83
RNF4-213ENST00000509388 SPATA31A6Q5VVP1 1343 aa20.25■□□□□ 0.83
RNF4-213ENST00000509388 TRPM3Q9HCF6 1732 aaPredicted RBP20.24■□□□□ 0.83
RNF4-213ENST00000509388 KCNH5Q8NCM2 988 aa20.24■□□□□ 0.83
RNF4-213ENST00000509388 USP31Q70CQ4 1352 aa20.23■□□□□ 0.83
RNF4-213ENST00000509388 SOX12O15370 315 aa20.23■□□□□ 0.83
RNF4-213ENST00000509388 CC2D1BQ5T0F9 858 aaKnown RBP20.23■□□□□ 0.83
RNF4-213ENST00000509388 AMER1Q5JTC6 1135 aaPredicted RBP20.22■□□□□ 0.83
RNF4-213ENST00000509388 MORC1Q86VD1 984 aa20.22■□□□□ 0.83
RNF4-213ENST00000509388 NSD2O96028 1365 aa20.21■□□□□ 0.83
RNF4-213ENST00000509388 NRKQ7Z2Y5 1582 aa20.21■□□□□ 0.83
RNF4-213ENST00000509388 GCP02774 474 aa20.21■□□□□ 0.83
RNF4-213ENST00000509388 ADAMTS2O95450 1211 aa20.2■□□□□ 0.82
RNF4-213ENST00000509388 MEX3CQ5U5Q3 659 aaKnown RBP20.2■□□□□ 0.82
RNF4-213ENST00000509388 ALS2Q96Q42 1657 aa20.19■□□□□ 0.82
RNF4-213ENST00000509388 USP19O94966 1318 aa20.19■□□□□ 0.82
RNF4-213ENST00000509388 ZBTB7CA1YPR0 619 aa20.18■□□□□ 0.82
RNF4-213ENST00000509388 ZC3H6P61129 1189 aaKnown RBP20.18■□□□□ 0.82
RNF4-213ENST00000509388 PIK3C2AO00443 1686 aa20.17■□□□□ 0.82
RNF4-213ENST00000509388 TNNT2P45379 298 aaPredicted RBP20.17■□□□□ 0.82
RNF4-213ENST00000509388 OVOS2A0A0J9YW53 1432 aa20.17■□□□□ 0.82
RNF4-213ENST00000509388 OVOS2Q6IE36 1432 aa20.17■□□□□ 0.82
RNF4-213ENST00000509388 SHPRHQ149N8 1683 aa20.16■□□□□ 0.82
RNF4-213ENST00000509388 NPC1L1Q9UHC9 1359 aa20.16■□□□□ 0.82
RNF4-213ENST00000509388 PRDM11Q9NQV5 511 aa20.15■□□□□ 0.82
RNF4-213ENST00000509388 COL22A1Q8NFW1 1626 aaPredicted RBP20.14■□□□□ 0.81
RNF4-213ENST00000509388 MED1Q15648 1581 aaPredicted RBP20.14■□□□□ 0.81
RNF4-213ENST00000509388 NGLY1Q96IV0 654 aa20.12■□□□□ 0.81
RNF4-213ENST00000509388 C8orf37Q96NL8 207 aa20.12■□□□□ 0.81
RNF4-213ENST00000509388 KIAA0232Q92628 1395 aa20.11■□□□□ 0.81
RNF4-213ENST00000509388 SLIT3O75094 1523 aa20.11■□□□□ 0.81
RNF4-213ENST00000509388 KIF20BQ96Q89 1820 aa20.11■□□□□ 0.81
RNF4-213ENST00000509388 PPM1GO15355 546 aaPredicted RBP20.1■□□□□ 0.81
RNF4-213ENST00000509388 FBLN1P23142 703 aa20.1■□□□□ 0.81
RNF4-213ENST00000509388 AMPHP49418 695 aa20.1■□□□□ 0.81
RNF4-213ENST00000509388 ARHGEF25Q86VW2 580 aa20.1■□□□□ 0.81
RNF4-213ENST00000509388 FAM83GA6ND36 823 aa20.09■□□□□ 0.81
RNF4-213ENST00000509388 RRS1Q15050 365 aaKnown RBP20.09■□□□□ 0.81
RNF4-213ENST00000509388 RALBP1Q15311 655 aa20.09■□□□□ 0.81
RNF4-213ENST00000509388 CHRNA2Q15822 529 aa20.09■□□□□ 0.81
RNF4-213ENST00000509388 CPDO75976 1380 aa20.08■□□□□ 0.81
RNF4-213ENST00000509388 ANP32CO43423 234 aa20.08■□□□□ 0.81
RNF4-213ENST00000509388 AATKQ6ZMQ8 1374 aa20.08■□□□□ 0.8
RNF4-213ENST00000509388 LRP6O75581 1613 aa20.07■□□□□ 0.8
RNF4-213ENST00000509388 MAP3K19Q56UN5 1328 aa20.06■□□□□ 0.8
RNF4-213ENST00000509388 PHRF1Q9P1Y6 1649 aaKnown RBP20.05■□□□□ 0.8
RNF4-213ENST00000509388 EVA1CP58658 441 aa20.05■□□□□ 0.8
RNF4-213ENST00000509388 BTG4Q9NY30 223 aa20.05■□□□□ 0.8
RNF4-213ENST00000509388 USP54Q70EL1 1684 aa20.05■□□□□ 0.8
RNF4-213ENST00000509388 NFAT5O94916 1531 aa20.04■□□□□ 0.8
RNF4-213ENST00000509388 IP6K1Q92551 441 aa20.04■□□□□ 0.8
RNF4-213ENST00000509388 PHF23Q9BUL5 403 aaPredicted RBP20.04■□□□□ 0.8
RNF4-213ENST00000509388 POLKQ9UBT6 870 aa20.04■□□□□ 0.8
RNF4-213ENST00000509388 EMILIN1Q9Y6C2 1016 aa20.04■□□□□ 0.8
RNF4-213ENST00000509388 PPP2R1AP30153 589 aa20.02■□□□□ 0.8
RNF4-213ENST00000509388 HOXC9P31274 260 aa20.02■□□□□ 0.8
RNF4-213ENST00000509388 DIEXFQ68CQ4 756 aaKnown RBP20.02■□□□□ 0.8
RNF4-213ENST00000509388 PRKRIP1Q9H875 184 aaPredicted RBP20.02■□□□□ 0.8
RNF4-213ENST00000509388 USP21Q9UK80 565 aa20.02■□□□□ 0.8
RNF4-213ENST00000509388 PARD3Q8TEW0 1356 aa20.02■□□□□ 0.8
RNF4-213ENST00000509388 ABCA3Q99758 1704 aa20.02■□□□□ 0.79
RNF4-213ENST00000509388 MARF1Q9Y4F3 1742 aaKnown RBP20.02■□□□□ 0.79
RNF4-213ENST00000509388 CRYBG1Q9Y4K1 1723 aa20.02■□□□□ 0.79
RNF4-213ENST00000509388 KIF24Q5T7B8 1368 aa20.01■□□□□ 0.79
RNF4-213ENST00000509388 CSB-PGBD3P0DP91 1061 aa20.01■□□□□ 0.79
RNF4-213ENST00000509388 MTHFSP49914 203 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 189 ms