RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 WAPLQ7Z5K2 1190 aa11.68□□□□□ -0.54
SCN1A-207ENST00000507401 ORAI2Q96SN7 254 aa11.68□□□□□ -0.54
SCN1A-207ENST00000507401 SOS2Q07890 1332 aaPredicted RBP11.67□□□□□ -0.54
SCN1A-207ENST00000507401 PYGBP11216 843 aa11.67□□□□□ -0.54
SCN1A-207ENST00000507401 ATN1P54259 1190 aaPredicted RBP11.67□□□□□ -0.54
SCN1A-207ENST00000507401 POTEAQ6S8J7 498 aa11.67□□□□□ -0.54
SCN1A-207ENST00000507401 LAMC1P11047 1609 aa11.67□□□□□ -0.54
SCN1A-207ENST00000507401 TIE1P35590 1138 aa11.66□□□□□ -0.54
SCN1A-207ENST00000507401 ZNF772Q68DY9 489 aaPredicted RBP11.66□□□□□ -0.54
SCN1A-207ENST00000507401 DCAF11Q8TEB1 546 aa11.66□□□□□ -0.54
SCN1A-207ENST00000507401 CDC42BPGQ6DT37 1551 aa11.66□□□□□ -0.54
SCN1A-207ENST00000507401 KNDC1Q76NI1 1749 aa11.66□□□□□ -0.54
SCN1A-207ENST00000507401 GSE1Q14687 1217 aa11.65□□□□□ -0.54
SCN1A-207ENST00000507401 ESCO1Q5FWF5 840 aa11.65□□□□□ -0.54
SCN1A-207ENST00000507401 MEX3CQ5U5Q3 659 aaKnown RBP11.65□□□□□ -0.54
SCN1A-207ENST00000507401 DDX17Q92841 729 aaKnown RBP11.64□□□□□ -0.55
SCN1A-207ENST00000507401 LRP6O75581 1613 aa11.64□□□□□ -0.55
SCN1A-207ENST00000507401 NPHP3Q7Z494 1330 aa11.63□□□□□ -0.55
SCN1A-207ENST00000507401 TTLL13PA6NNM8 815 aa11.63□□□□□ -0.55
SCN1A-207ENST00000507401 KDM2AQ9Y2K7 1162 aa11.63□□□□□ -0.55
SCN1A-207ENST00000507401 PNPLA6Q8IY17 1366 aa11.63□□□□□ -0.55
SCN1A-207ENST00000507401 PLEKHH1Q9ULM0 1364 aa11.63□□□□□ -0.55
SCN1A-207ENST00000507401 NUTM2BA6NNL0 878 aaPredicted RBP11.62□□□□□ -0.55
SCN1A-207ENST00000507401 NUTM2EB1AL46 878 aaPredicted RBP11.62□□□□□ -0.55
SCN1A-207ENST00000507401 POTEB2H3BUK9 544 aa11.62□□□□□ -0.55
SCN1A-207ENST00000507401 CHRM1P11229 460 aaPredicted RBP11.62□□□□□ -0.55
SCN1A-207ENST00000507401 NUTM2AQ8IVF1 878 aaPredicted RBP11.62□□□□□ -0.55
SCN1A-207ENST00000507401 PCGF6Q9BYE7 350 aa11.62□□□□□ -0.55
SCN1A-207ENST00000507401 DLC1Q96QB1 1528 aa11.61□□□□□ -0.55
SCN1A-207ENST00000507401 FOXO3O43524 673 aa11.61□□□□□ -0.55
SCN1A-207ENST00000507401 PRAM1Q96QH2 718 aa11.61□□□□□ -0.55
SCN1A-207ENST00000507401 POGKQ9P215 609 aa11.61□□□□□ -0.55
SCN1A-207ENST00000507401 ADGRB1O14514 1584 aa11.6□□□□□ -0.55
SCN1A-207ENST00000507401 NUTM2FA1L443 756 aa11.59□□□□□ -0.55
SCN1A-207ENST00000507401 METRNQ9UJH8 293 aa11.59□□□□□ -0.55
SCN1A-207ENST00000507401 TRAK1Q9UPV9 953 aa11.59□□□□□ -0.55
SCN1A-207ENST00000507401 FMN2Q9NZ56 1722 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 C7P10643 843 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 RXRBP28702 533 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 SLC39A7Q92504 469 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 PCDHB8Q9UN66 801 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 PHF8Q9UPP1 1060 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 AFF2P51816 1311 aa11.58□□□□□ -0.56
SCN1A-207ENST00000507401 PXDNQ92626 1479 aa11.57□□□□□ -0.56
SCN1A-207ENST00000507401 PSME1Q06323 249 aa11.57□□□□□ -0.56
SCN1A-207ENST00000507401 TRIM26Q12899 539 aaPredicted RBP11.57□□□□□ -0.56
SCN1A-207ENST00000507401 NGLY1Q96IV0 654 aa11.57□□□□□ -0.56
SCN1A-207ENST00000507401 POTEFA5A3E0 1075 aa11.56□□□□□ -0.56
SCN1A-207ENST00000507401 SAFB2Q14151 953 aaKnown RBP eCLIP11.56□□□□□ -0.56
SCN1A-207ENST00000507401 KRT28Q7Z3Y7 464 aa11.56□□□□□ -0.56
SCN1A-207ENST00000507401 FNBP4Q8N3X1 1017 aaPredicted RBP11.56□□□□□ -0.56
SCN1A-207ENST00000507401 C8orf37Q96NL8 207 aa11.56□□□□□ -0.56
SCN1A-207ENST00000507401 COL22A1Q8NFW1 1626 aaPredicted RBP11.56□□□□□ -0.56
SCN1A-207ENST00000507401 SPATA31A3Q5VYP0 1347 aa11.56□□□□□ -0.56
SCN1A-207ENST00000507401 KIF1AQ12756 1690 aa11.55□□□□□ -0.56
SCN1A-207ENST00000507401 ANKARQ7Z5J8 1434 aa11.55□□□□□ -0.56
SCN1A-207ENST00000507401 WASLO00401 505 aaPredicted RBP11.55□□□□□ -0.56
SCN1A-207ENST00000507401 ADAMTS2O95450 1211 aa11.55□□□□□ -0.56
SCN1A-207ENST00000507401 QTRT2Q9H974 415 aaKnown RBP11.55□□□□□ -0.56
SCN1A-207ENST00000507401 EIF3AQ14152 1382 aaKnown RBP11.54□□□□□ -0.56
SCN1A-207ENST00000507401 RBM6P78332 1123 aaKnown RBP11.54□□□□□ -0.56
SCN1A-207ENST00000507401 XPCQ01831 940 aaPredicted RBP11.54□□□□□ -0.56
SCN1A-207ENST00000507401 KIAA1210Q9ULL0 1709 aa11.54□□□□□ -0.56
SCN1A-207ENST00000507401 ADGRB2O60241 1585 aa11.54□□□□□ -0.56
SCN1A-207ENST00000507401 CDK12Q9NYV4 1490 aaPredicted RBP11.53□□□□□ -0.56
SCN1A-207ENST00000507401 POTEJP0CG39 1038 aa11.53□□□□□ -0.56
SCN1A-207ENST00000507401 TMEM106CQ9BVX2 250 aa11.53□□□□□ -0.56
SCN1A-207ENST00000507401 RGPD8O14715 1765 aaPredicted RBP11.53□□□□□ -0.56
SCN1A-207ENST00000507401 SBNO1A3KN83 1393 aa11.53□□□□□ -0.56
SCN1A-207ENST00000507401 HIRIP3Q9BW71 556 aaPredicted RBP11.52□□□□□ -0.57
SCN1A-207ENST00000507401 USP21Q9UK80 565 aa11.52□□□□□ -0.57
SCN1A-207ENST00000507401 CIZ1Q9ULV3 898 aaPredicted RBP11.52□□□□□ -0.57
SCN1A-207ENST00000507401 TRIM35Q9UPQ4 493 aa11.52□□□□□ -0.57
SCN1A-207ENST00000507401 MINK1Q8N4C8 1332 aaPredicted RBP11.52□□□□□ -0.57
SCN1A-207ENST00000507401 L3MBTL2Q969R5 705 aa11.51□□□□□ -0.57
SCN1A-207ENST00000507401 TRPC5Q9UL62 973 aaPredicted RBP11.51□□□□□ -0.57
SCN1A-207ENST00000507401 NBPF1Q3BBV0 1214 aa11.5□□□□□ -0.57
SCN1A-207ENST00000507401 PMFBP1Q8TBY8 1022 aa11.5□□□□□ -0.57
SCN1A-207ENST00000507401 USP32Q8NFA0 1604 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 ZNF467Q7Z7K2 595 aaPredicted RBP11.49□□□□□ -0.57
SCN1A-207ENST00000507401 SIN3AQ96ST3 1273 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 ARHGEF10O15013 1369 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 GPRASP1Q5JY77 1395 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 TNS3Q68CZ2 1445 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 TULP4Q9NRJ4 1543 aa11.49□□□□□ -0.57
SCN1A-207ENST00000507401 ARHGEF28Q8N1W1 1705 aaKnown RBP11.49□□□□□ -0.57
SCN1A-207ENST00000507401 NUDT16Q96DE0 195 aaKnown RBP11.48□□□□□ -0.57
SCN1A-207ENST00000507401 OTUD5Q96G74 571 aa11.48□□□□□ -0.57
SCN1A-207ENST00000507401 CDK19Q9BWU1 502 aa11.48□□□□□ -0.57
SCN1A-207ENST00000507401 COLQQ9Y215 455 aaPredicted RBP11.48□□□□□ -0.57
SCN1A-207ENST00000507401 PRR36Q9H6K5 1346 aa11.48□□□□□ -0.57
SCN1A-207ENST00000507401 MARF1Q9Y4F3 1742 aaKnown RBP11.48□□□□□ -0.57
SCN1A-207ENST00000507401 BCL9LQ86UU0 1499 aa11.47□□□□□ -0.57
SCN1A-207ENST00000507401 IER5LQ5T953 404 aa11.47□□□□□ -0.57
SCN1A-207ENST00000507401 NGDNQ8NEJ9 315 aaKnown RBP11.47□□□□□ -0.57
SCN1A-207ENST00000507401 ATRNO75882 1429 aa11.46□□□□□ -0.57
SCN1A-207ENST00000507401 PLEKHG3A1L390 1219 aa11.46□□□□□ -0.57
SCN1A-207ENST00000507401 NEUROD1Q13562 356 aa11.46□□□□□ -0.57
SCN1A-207ENST00000507401 UNC5CLQ8IV45 518 aa11.46□□□□□ -0.57
SCN1A-207ENST00000507401 UPF1Q92900 1129 aaKnown RBP eCLIP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms