RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 DIAPH3Q9NSV4 1193 aa13.2□□□□□ -0.3
LIMCH1-205ENST00000503057 NUCB2P80303 420 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 ANKRD36BQ8N2N9 1353 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 IDI1Q13907 227 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 GORABQ5T7V8 394 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 GNAI3P08754 354 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 HSP90B1P14625 803 aaKnown RBP13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 KIAA2012Q0VF49 1180 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 ATP6V1DQ9Y5K8 247 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 ALDH1L2Q3SY69 923 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 SULT6B1Q6IMI4 303 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 DRC7Q8IY82 874 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 SPATA31E1Q6ZUB1 1445 aa13.19□□□□□ -0.3
LIMCH1-205ENST00000503057 NUDT16Q96DE0 195 aaKnown RBP13.18□□□□□ -0.3
LIMCH1-205ENST00000503057 ZNF330Q9Y3S2 320 aaPredicted RBP13.18□□□□□ -0.3
LIMCH1-205ENST00000503057 CCDC61Q9Y6R9 512 aa13.18□□□□□ -0.3
LIMCH1-205ENST00000503057 TAF7LQ5H9L4 462 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 TTC5Q8N0Z6 440 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 THEMISQ8N1K5 641 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 MYO5CQ9NQX4 1742 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 UBTFL1P0CB47 393 aaPredicted RBP13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 CHD1LQ86WJ1 897 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 C1orf115Q9H7X2 142 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 NPHP1O15259 732 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 TAOK2Q9UL54 1235 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 POGZQ7Z3K3 1410 aa13.17□□□□□ -0.3
LIMCH1-205ENST00000503057 IFIT2P09913 472 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 IFT57Q9NWB7 429 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 GNL2Q13823 731 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 POLR3AO14802 1390 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 PER1O15534 1290 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 CCT4P50991 539 aaKnown RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 ABTB2Q8N961 1025 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 ANO2Q9NQ90 1003 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 ATP7AQ04656 1500 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 FOXD4L5Q5VV16 416 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 FOXD4L4Q8WXT5 416 aaPredicted RBP13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 KIF3AQ9Y496 699 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 INSRP06213 1382 aa13.16□□□□□ -0.3
LIMCH1-205ENST00000503057 PUS7Q96PZ0 661 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-205ENST00000503057 ERC2O15083 957 aa13.15□□□□□ -0.3
LIMCH1-205ENST00000503057 TMEM57Q8N5G2 664 aa13.15□□□□□ -0.3
LIMCH1-205ENST00000503057 RRS1Q15050 365 aaKnown RBP13.15□□□□□ -0.3
LIMCH1-205ENST00000503057 KDM5CP41229 1560 aa13.15□□□□□ -0.31
LIMCH1-205ENST00000503057 GNAI2P04899 355 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 ZKSCAN1P17029 563 aaPredicted RBP13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 RABEP1Q15276 862 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 NUTM2GQ5VZR2 741 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 WAPLQ7Z5K2 1190 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 CHMP4CQ96CF2 233 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 IL16Q14005 1332 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 SLC4A2P04920 1241 aa13.14□□□□□ -0.31
LIMCH1-205ENST00000503057 FRAT2O75474 233 aaPredicted RBP13.13□□□□□ -0.31
LIMCH1-205ENST00000503057 SSH1Q8WYL5 1049 aa13.13□□□□□ -0.31
LIMCH1-205ENST00000503057 NPC1L1Q9UHC9 1359 aa13.13□□□□□ -0.31
LIMCH1-205ENST00000503057 G3BP1Q13283 466 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIMCH1-205ENST00000503057 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIMCH1-205ENST00000503057 SAMD9LQ8IVG5 1584 aa13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 MBD5Q9P267 1494 aa13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 WASLO00401 505 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 ZMYM4Q5VZL5 1548 aa13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 CCDC27Q2M243 656 aa13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 FBXO31Q5XUX0 539 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 PLEKHO1Q53GL0 409 aaPredicted RBP13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 RAPGEF4Q8WZA2 1011 aa13.12□□□□□ -0.31
LIMCH1-205ENST00000503057 PREX2Q70Z35 1606 aa13.11□□□□□ -0.31
LIMCH1-205ENST00000503057 RNF20Q5VTR2 975 aa13.11□□□□□ -0.31
LIMCH1-205ENST00000503057 RSPH6AQ9H0K4 717 aa13.11□□□□□ -0.31
LIMCH1-205ENST00000503057 ADCY10Q96PN6 1610 aa13.11□□□□□ -0.31
LIMCH1-205ENST00000503057 LRRFIP1Q32MZ4 808 aaKnown RBP13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 RPAP2Q8IXW5 612 aaPredicted RBP13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 MCM2P49736 904 aa13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 CNTROBQ8N137 903 aa13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 TRAK2O60296 914 aa13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 MRE11P49959 708 aa13.1□□□□□ -0.31
LIMCH1-205ENST00000503057 MCTP1Q6DN14 999 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 BLMP54132 1417 aaPredicted RBP13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 NME9Q86XW9 330 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 KDM5DQ9BY66 1539 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 TPM4P67936 248 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 PLEKHH1Q9ULM0 1364 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 H3BQV1 296 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 ESCO1Q5FWF5 840 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 IFFO2Q5TF58 517 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 SKAP1Q86WV1 359 aa13.09□□□□□ -0.31
LIMCH1-205ENST00000503057 TRIM27P14373 513 aa13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 LRRCC1Q9C099 1032 aa13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 ATF3P18847 181 aa13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 RIC3Q7Z5B4 369 aa13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 SLC26A8Q96RN1 970 aa13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 K7ELQ4 463 aaPredicted RBP13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 CDK11BP21127 795 aaKnown RBP13.08□□□□□ -0.32
LIMCH1-205ENST00000503057 HDGFL1Q5TGJ6 251 aa13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 FAM184AQ8NB25 1140 aa13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 SURF6O75683 361 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 EMILIN1Q9Y6C2 1016 aa13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 RNF123Q5XPI4 1314 aa13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 ERC1Q8IUD2 1116 aa13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 KDM5AP29375 1690 aaKnown RBP13.07□□□□□ -0.32
LIMCH1-205ENST00000503057 SRCIN1Q9C0H9 1055 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms