RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 PDE3AQ14432 1141 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 TCP11L2Q8N4U5 519 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 CDC42BPGQ6DT37 1551 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 CPS1P31327 1500 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 KDM2BQ8NHM5 1336 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 FAM135BQ49AJ0 1406 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 MYH16Q9H6N6 1097 aa15.54■□□□□ 0.08
NUP54-202ENST00000502850 TECPR2O15040 1411 aa15.53■□□□□ 0.08
NUP54-202ENST00000502850 UBAP1LF5GYI3 381 aa15.53■□□□□ 0.08
NUP54-202ENST00000502850 CDK19Q9BWU1 502 aa15.53■□□□□ 0.08
NUP54-202ENST00000502850 CT47B1P0C2W7 299 aaPredicted RBP15.52■□□□□ 0.08
NUP54-202ENST00000502850 C20orf194Q5TEA3 1177 aa15.52■□□□□ 0.08
NUP54-202ENST00000502850 SIRT1Q96EB6 747 aa15.52■□□□□ 0.08
NUP54-202ENST00000502850 SPINK5Q9NQ38 1064 aaPredicted RBP15.52■□□□□ 0.08
NUP54-202ENST00000502850 U2AF1L5P0DN76 240 aaPredicted RBP15.51■□□□□ 0.07
NUP54-202ENST00000502850 U2AF1Q01081 240 aaKnown RBP eCLIP15.51■□□□□ 0.07
NUP54-202ENST00000502850 TXNDC2Q86VQ3 553 aa15.51■□□□□ 0.07
NUP54-202ENST00000502850 CANXP27824 592 aaKnown RBP15.5■□□□□ 0.07
NUP54-202ENST00000502850 ITSN1Q15811 1721 aa15.5■□□□□ 0.07
NUP54-202ENST00000502850 ARHGAP23Q9P227 1491 aa15.5■□□□□ 0.07
NUP54-202ENST00000502850 LTKP29376 864 aa15.5■□□□□ 0.07
NUP54-202ENST00000502850 NOP58Q9Y2X3 529 aaKnown RBP15.5■□□□□ 0.07
NUP54-202ENST00000502850 EID1Q9Y6B2 187 aa15.5■□□□□ 0.07
NUP54-202ENST00000502850 MON2Q7Z3U7 1717 aa15.5■□□□□ 0.07
NUP54-202ENST00000502850 SLIT1O75093 1534 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 MAPK8IP3Q9UPT6 1336 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 PNPLA6Q8IY17 1366 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 FYB1O15117 783 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 PDE4AP27815 886 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 IPO9Q96P70 1041 aaKnown RBP15.49■□□□□ 0.07
NUP54-202ENST00000502850 BACH2Q9BYV9 841 aa15.49■□□□□ 0.07
NUP54-202ENST00000502850 EDC4Q6P2E9 1401 aaKnown RBP15.49■□□□□ 0.07
NUP54-202ENST00000502850 GGNBP2Q9H3C7 697 aa15.48■□□□□ 0.07
NUP54-202ENST00000502850 AKAP12Q02952 1782 aa15.48■□□□□ 0.07
NUP54-202ENST00000502850 IL16Q14005 1332 aa15.47■□□□□ 0.07
NUP54-202ENST00000502850 TMEM2Q9UHN6 1383 aa15.47■□□□□ 0.07
NUP54-202ENST00000502850 STRCP1A6NGW2 1772 aa15.46■□□□□ 0.07
NUP54-202ENST00000502850 DIAPH1O60610 1272 aaKnown RBP15.46■□□□□ 0.06
NUP54-202ENST00000502850 BCAR3O75815 825 aa15.46■□□□□ 0.06
NUP54-202ENST00000502850 NEUROD2Q15784 382 aa15.46■□□□□ 0.06
NUP54-202ENST00000502850 CABP1Q9NZU7 370 aa15.46■□□□□ 0.06
NUP54-202ENST00000502850 CPSF1Q10570 1443 aaKnown RBP15.45■□□□□ 0.06
NUP54-202ENST00000502850 TOM1O60784 492 aa15.45■□□□□ 0.06
NUP54-202ENST00000502850 PPIP5K1Q6PFW1 1433 aa15.44■□□□□ 0.06
NUP54-202ENST00000502850 WASLO00401 505 aaPredicted RBP15.44■□□□□ 0.06
NUP54-202ENST00000502850 U2SURPO15042 1029 aaKnown RBP15.44■□□□□ 0.06
NUP54-202ENST00000502850 NEFMP07197 916 aa15.44■□□□□ 0.06
NUP54-202ENST00000502850 RARSP54136 660 aaKnown RBP15.44■□□□□ 0.06
NUP54-202ENST00000502850 RRP7AQ9Y3A4 280 aaKnown RBP15.44■□□□□ 0.06
NUP54-202ENST00000502850 CDK12Q9NYV4 1490 aaPredicted RBP15.44■□□□□ 0.06
NUP54-202ENST00000502850 PLEKHF1Q96S99 279 aa15.43■□□□□ 0.06
NUP54-202ENST00000502850 VIRMAQ69YN4 1812 aaKnown RBP15.43■□□□□ 0.06
NUP54-202ENST00000502850 ZBTB47Q9UFB7 747 aaPredicted RBP15.43■□□□□ 0.06
NUP54-202ENST00000502850 MAP2P11137 1827 aaKnown RBP15.43■□□□□ 0.06
NUP54-202ENST00000502850 PIP4K2BP78356 416 aa15.42■□□□□ 0.06
NUP54-202ENST00000502850 CLUAP1Q96AJ1 413 aa15.42■□□□□ 0.06
NUP54-202ENST00000502850 METP08581 1390 aa15.42■□□□□ 0.06
NUP54-202ENST00000502850 AATKQ6ZMQ8 1374 aa15.42■□□□□ 0.06
NUP54-202ENST00000502850 LRRC7Q96NW7 1537 aa15.42■□□□□ 0.06
NUP54-202ENST00000502850 TMPOP42166 694 aaKnown RBP15.41■□□□□ 0.06
NUP54-202ENST00000502850 WAPLQ7Z5K2 1190 aa15.41■□□□□ 0.06
NUP54-202ENST00000502850 DDRGK1Q96HY6 314 aa15.41■□□□□ 0.06
NUP54-202ENST00000502850 PLEKHG1Q9ULL1 1385 aa15.41■□□□□ 0.06
NUP54-202ENST00000502850 TOPAZ1Q8N9V7 1692 aa15.41■□□□□ 0.06
NUP54-202ENST00000502850 FCHSD2O94868 740 aa15.4■□□□□ 0.06
NUP54-202ENST00000502850 PMFBP1Q8TBY8 1022 aa15.4■□□□□ 0.06
NUP54-202ENST00000502850 SENP3Q9H4L4 574 aaPredicted RBP15.4■□□□□ 0.06
NUP54-202ENST00000502850 DIP2AQ14689 1571 aa15.39■□□□□ 0.05
NUP54-202ENST00000502850 CALD1Q05682 793 aaKnown RBP15.39■□□□□ 0.05
NUP54-202ENST00000502850 FAM161AQ3B820 660 aa15.39■□□□□ 0.05
NUP54-202ENST00000502850 ZNF692Q9BU19 519 aaPredicted RBP15.39■□□□□ 0.05
NUP54-202ENST00000502850 CCDC61Q9Y6R9 512 aa15.39■□□□□ 0.05
NUP54-202ENST00000502850 NRKQ7Z2Y5 1582 aa15.38■□□□□ 0.05
NUP54-202ENST00000502850 FRAT1Q92837 279 aaPredicted RBP15.37■□□□□ 0.05
NUP54-202ENST00000502850 ADAMTS13Q76LX8 1427 aa15.37■□□□□ 0.05
NUP54-202ENST00000502850 ZKSCAN2Q63HK3 967 aa15.36■□□□□ 0.05
NUP54-202ENST00000502850 ZNF428Q96B54 188 aa15.36■□□□□ 0.05
NUP54-202ENST00000502850 NUDT16Q96DE0 195 aaKnown RBP15.36■□□□□ 0.05
NUP54-202ENST00000502850 SLC26A8Q96RN1 970 aa15.36■□□□□ 0.05
NUP54-202ENST00000502850 HSPA1LP34931 641 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.35■□□□□ 0.052e-11■■□□□ 11.8
NUP54-202ENST00000502850 POLKQ9UBT6 870 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 TRIM35Q9UPQ4 493 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 COG6Q9Y2V7 657 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 XIRP1Q702N8 1843 aaKnown RBP15.35■□□□□ 0.05
NUP54-202ENST00000502850 RIPK4P57078 832 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 PANK1Q8TE04 598 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 COG3Q96JB2 828 aa15.35■□□□□ 0.05
NUP54-202ENST00000502850 KCNA6P17658 529 aa15.34■□□□□ 0.05
NUP54-202ENST00000502850 KIF16BQ96L93 1317 aa15.33■□□□□ 0.05
NUP54-202ENST00000502850 NALCNQ8IZF0 1738 aa15.33■□□□□ 0.05
NUP54-202ENST00000502850 LMOD3Q0VAK6 560 aa15.33■□□□□ 0.04
NUP54-202ENST00000502850 NPM2Q86SE8 214 aaKnown RBP15.33■□□□□ 0.04
NUP54-202ENST00000502850 FTSJ3Q8IY81 847 aaKnown RBP15.33■□□□□ 0.04
NUP54-202ENST00000502850 RSPH6AQ9H0K4 717 aa15.33■□□□□ 0.04
NUP54-202ENST00000502850 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.33■□□□□ 0.04
NUP54-202ENST00000502850 PTCH1Q13635 1447 aa15.33■□□□□ 0.04
NUP54-202ENST00000502850 MVPQ14764 893 aaKnown RBP15.32■□□□□ 0.04
NUP54-202ENST00000502850 ALDH1L2Q3SY69 923 aa15.32■□□□□ 0.04
NUP54-202ENST00000502850 DZIP1LQ8IYY4 767 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms