RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 CPS1P31327 1500 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 CHMP4AQ9BY43 222 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 C19orf44Q9H6X5 657 aa10.89□□□□□ -0.67
USP54-215ENST00000497106 PMFBP1Q8TBY8 1022 aa10.88□□□□□ -0.67
USP54-215ENST00000497106 ABTB2Q8N961 1025 aa10.88□□□□□ -0.67
USP54-215ENST00000497106 CARD14Q9BXL6 1004 aa10.88□□□□□ -0.67
USP54-215ENST00000497106 SMG6Q86US8 1419 aaKnown RBP10.88□□□□□ -0.67
USP54-215ENST00000497106 TTC21BQ7Z4L5 1316 aa10.88□□□□□ -0.67
USP54-215ENST00000497106 ADAMTS8Q9UP79 889 aa10.88□□□□□ -0.67
USP54-215ENST00000497106 TULP4Q9NRJ4 1543 aa10.87□□□□□ -0.67
USP54-215ENST00000497106 ARHGEF28Q8N1W1 1705 aaKnown RBP10.87□□□□□ -0.67
USP54-215ENST00000497106 RTF1Q92541 710 aaKnown RBP10.87□□□□□ -0.67
USP54-215ENST00000497106 FYB1O15117 783 aa10.86□□□□□ -0.67
USP54-215ENST00000497106 SOX12O15370 315 aa10.86□□□□□ -0.67
USP54-215ENST00000497106 NEUROD2Q15784 382 aa10.86□□□□□ -0.67
USP54-215ENST00000497106 CHMP4BQ9H444 224 aaKnown RBP10.86□□□□□ -0.67
USP54-215ENST00000497106 ADAMTSL3P82987 1691 aa10.86□□□□□ -0.67
USP54-215ENST00000497106 MED14O60244 1454 aa10.86□□□□□ -0.67
USP54-215ENST00000497106 FCHSD2O94868 740 aa10.85□□□□□ -0.67
USP54-215ENST00000497106 CCDC146Q8IYE0 955 aa10.85□□□□□ -0.67
USP54-215ENST00000497106 SUPT16HQ9Y5B9 1047 aaKnown RBP10.85□□□□□ -0.67
USP54-215ENST00000497106 RCAN3Q9UKA8 241 aa10.85□□□□□ -0.67
USP54-215ENST00000497106 CCDC184Q52MB2 194 aa10.84□□□□□ -0.67
USP54-215ENST00000497106 APAF1O14727 1248 aa10.84□□□□□ -0.67
USP54-215ENST00000497106 ADGRL3Q9HAR2 1447 aa10.84□□□□□ -0.67
USP54-215ENST00000497106 NCBP3Q53F19 620 aaKnown RBP10.84□□□□□ -0.67
USP54-215ENST00000497106 NME9Q86XW9 330 aa10.84□□□□□ -0.67
USP54-215ENST00000497106 MYO5BQ9ULV0 1848 aa10.84□□□□□ -0.67
USP54-215ENST00000497106 KNDC1Q76NI1 1749 aa10.83□□□□□ -0.68
USP54-215ENST00000497106 NCOA3Q9Y6Q9 1424 aa10.83□□□□□ -0.68
USP54-215ENST00000497106 NPHP3Q7Z494 1330 aa10.83□□□□□ -0.68
USP54-215ENST00000497106 NKTRP30414 1462 aaKnown RBP10.83□□□□□ -0.68
USP54-215ENST00000497106 AATKQ6ZMQ8 1374 aa10.82□□□□□ -0.68
USP54-215ENST00000497106 WDR63Q8IWG1 891 aa10.82□□□□□ -0.68
USP54-215ENST00000497106 AEBP2Q6ZN18 517 aaPredicted RBP10.82□□□□□ -0.68
USP54-215ENST00000497106 PPP4R2Q9NY27 417 aa10.81□□□□□ -0.68
USP54-215ENST00000497106 USP32Q8NFA0 1604 aa10.81□□□□□ -0.68
USP54-215ENST00000497106 CSB-PGBD3P0DP91 1061 aa10.81□□□□□ -0.68
USP54-215ENST00000497106 GAS2L2Q8NHY3 880 aa10.81□□□□□ -0.68
USP54-215ENST00000497106 ZNF142P52746 1687 aaPredicted RBP10.8□□□□□ -0.68
USP54-215ENST00000497106 CT47B1P0C2W7 299 aaPredicted RBP10.8□□□□□ -0.68
USP54-215ENST00000497106 CDC42BPGQ6DT37 1551 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 HSPA2P54652 639 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 TCP11L2Q8N4U5 519 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 USP6P35125 1406 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 BLMP54132 1417 aaPredicted RBP10.8□□□□□ -0.68
USP54-215ENST00000497106 IPO8O15397 1037 aaKnown RBP10.8□□□□□ -0.68
USP54-215ENST00000497106 KRT28Q7Z3Y7 464 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 CCDC136Q96JN2 1154 aa10.8□□□□□ -0.68
USP54-215ENST00000497106 RIPK4P57078 832 aa10.79□□□□□ -0.68
USP54-215ENST00000497106 KIF24Q5T7B8 1368 aa10.79□□□□□ -0.68
USP54-215ENST00000497106 GNAI1P63096 354 aa10.78□□□□□ -0.68
USP54-215ENST00000497106 ZBTB47Q9UFB7 747 aaPredicted RBP10.78□□□□□ -0.68
USP54-215ENST00000497106 FLT4P35916 1363 aa10.78□□□□□ -0.68
USP54-215ENST00000497106 ADGRB2O60241 1585 aa10.78□□□□□ -0.68
USP54-215ENST00000497106 PTPRUQ92729 1446 aa10.78□□□□□ -0.68
USP54-215ENST00000497106 LAS1LQ9Y4W2 734 aaKnown RBP10.78□□□□□ -0.68
USP54-215ENST00000497106 CPSF1Q10570 1443 aaKnown RBP10.78□□□□□ -0.68
USP54-215ENST00000497106 PRKAR2BP31323 418 aa10.78□□□□□ -0.68
USP54-215ENST00000497106 PLEKHG5O94827 1062 aa10.77□□□□□ -0.69
USP54-215ENST00000497106 CCDC27Q2M243 656 aa10.77□□□□□ -0.69
USP54-215ENST00000497106 FTSJ3Q8IY81 847 aaKnown RBP10.77□□□□□ -0.69
USP54-215ENST00000497106 TMEM94Q12767 1356 aa10.77□□□□□ -0.69
USP54-215ENST00000497106 PRR36Q9H6K5 1346 aa10.77□□□□□ -0.69
USP54-215ENST00000497106 POLKQ9UBT6 870 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 SBNO1A3KN83 1393 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 RRS1Q15050 365 aaKnown RBP10.76□□□□□ -0.69
USP54-215ENST00000497106 DCCP43146 1447 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 IL16Q14005 1332 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 NFE2L2Q16236 605 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 C1orf141Q5JVX7 400 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 ARHGEF10O15013 1369 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 EMILIN1Q9Y6C2 1016 aa10.76□□□□□ -0.69
USP54-215ENST00000497106 LTV1Q96GA3 475 aaPredicted RBP10.75□□□□□ -0.69
USP54-215ENST00000497106 RRP7AQ9Y3A4 280 aaKnown RBP10.75□□□□□ -0.69
USP54-215ENST00000497106 FOXO3O43524 673 aa10.75□□□□□ -0.69
USP54-215ENST00000497106 RTL1A6NKG5 1358 aa10.75□□□□□ -0.69
USP54-215ENST00000497106 PLEKHO1Q53GL0 409 aaPredicted RBP10.75□□□□□ -0.69
USP54-215ENST00000497106 NUTM2GQ5VZR2 741 aa10.75□□□□□ -0.69
USP54-215ENST00000497106 ZNF428Q96B54 188 aa10.75□□□□□ -0.69
USP54-215ENST00000497106 NRXN3Q9Y4C0 1643 aa10.75□□□□□ -0.69
USP54-215ENST00000497106 AAMPQ13685 434 aa10.74□□□□□ -0.69
USP54-215ENST00000497106 ITSN1Q15811 1721 aa10.74□□□□□ -0.69
USP54-215ENST00000497106 HMOX1P09601 288 aa10.74□□□□□ -0.69
USP54-215ENST00000497106 RRP1P56182 461 aaKnown RBP10.74□□□□□ -0.69
USP54-215ENST00000497106 CDK12Q9NYV4 1490 aaPredicted RBP10.74□□□□□ -0.69
USP54-215ENST00000497106 USP31Q70CQ4 1352 aa10.74□□□□□ -0.69
USP54-215ENST00000497106 TMPOP42166 694 aaKnown RBP10.74□□□□□ -0.69
USP54-215ENST00000497106 RAPGEF4Q8WZA2 1011 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 SENP3-EIF4A1A0A087X0R7 540 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 SULT6B1Q6IMI4 303 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 MYOM1P52179 1685 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 SLFN5Q08AF3 891 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 WWC1Q8IX03 1113 aa10.73□□□□□ -0.69
USP54-215ENST00000497106 EVA1CP58658 441 aa10.72□□□□□ -0.69
USP54-215ENST00000497106 AMOTQ4VCS5 1084 aa10.71□□□□□ -0.69
USP54-215ENST00000497106 KIF16BQ96L93 1317 aa10.71□□□□□ -0.7
USP54-215ENST00000497106 RBM33Q96EV2 1170 aaKnown RBP10.71□□□□□ -0.7
USP54-215ENST00000497106 SMC4Q9NTJ3 1288 aa10.71□□□□□ -0.7
USP54-215ENST00000497106 IRX6P78412 446 aaPredicted RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms