RNA–Protein interactions for RNA: ENST00000496081.5

HLA-A-208, Transcript of major histocompatibility complex, class I, A, humanhuman

Gene HLA-A, Length 1,786 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-A-208ENST00000496081 USP6P35125 1406 aa21.8■■□□□ 1.08
HLA-A-208ENST00000496081 SMG6Q86US8 1419 aaKnown RBP21.79■■□□□ 1.08
HLA-A-208ENST00000496081 ADGRL3Q9HAR2 1447 aa21.79■■□□□ 1.08
HLA-A-208ENST00000496081 PMFBP1Q8TBY8 1022 aa21.79■■□□□ 1.08
HLA-A-208ENST00000496081 ZRANB1Q9UGI0 708 aa21.79■■□□□ 1.08
HLA-A-208ENST00000496081 TTC21BQ7Z4L5 1316 aa21.78■■□□□ 1.08
HLA-A-208ENST00000496081 SSH2Q76I76 1423 aa21.77■■□□□ 1.08
HLA-A-208ENST00000496081 DMRT2Q9Y5R5 561 aa21.76■■□□□ 1.07
HLA-A-208ENST00000496081 CCDC146Q8IYE0 955 aa21.76■■□□□ 1.07
HLA-A-208ENST00000496081 NUDCQ9Y266 331 aa21.76■■□□□ 1.07
HLA-A-208ENST00000496081 COL3A1P02461 1466 aaPredicted RBP21.76■■□□□ 1.07
HLA-A-208ENST00000496081 COG3Q96JB2 828 aa21.75■■□□□ 1.07
HLA-A-208ENST00000496081 MAP2P11137 1827 aaKnown RBP21.74■■□□□ 1.07
HLA-A-208ENST00000496081 FBLN1P23142 703 aa21.74■■□□□ 1.07
HLA-A-208ENST00000496081 NGDNQ8NEJ9 315 aaKnown RBP21.74■■□□□ 1.07
HLA-A-208ENST00000496081 SUPT16HQ9Y5B9 1047 aaKnown RBP21.74■■□□□ 1.07
HLA-A-208ENST00000496081 PDE3BQ13370 1112 aa21.74■■□□□ 1.07
HLA-A-208ENST00000496081 POLKQ9UBT6 870 aa21.74■■□□□ 1.07
HLA-A-208ENST00000496081 PNPLA6Q8IY17 1366 aa21.73■■□□□ 1.07
HLA-A-208ENST00000496081 PROSER2Q86WR7 435 aaPredicted RBP21.72■■□□□ 1.07
HLA-A-208ENST00000496081 AATKQ6ZMQ8 1374 aa21.72■■□□□ 1.07
HLA-A-208ENST00000496081 C14orf37Q86TY3 774 aa21.71■■□□□ 1.07
HLA-A-208ENST00000496081 TTC21AQ8NDW8 1320 aa21.7■■□□□ 1.06
HLA-A-208ENST00000496081 APAF1O14727 1248 aa21.7■■□□□ 1.06
HLA-A-208ENST00000496081 OVOS2A0A0J9YW53 1432 aa21.7■■□□□ 1.06
HLA-A-208ENST00000496081 OVOS2Q6IE36 1432 aa21.7■■□□□ 1.06
HLA-A-208ENST00000496081 STRCP1A6NGW2 1772 aa21.7■■□□□ 1.06
HLA-A-208ENST00000496081 U2AF1L5P0DN76 240 aaPredicted RBP21.68■■□□□ 1.06
HLA-A-208ENST00000496081 U2AF1Q01081 240 aaKnown RBP eCLIP21.68■■□□□ 1.06
HLA-A-208ENST00000496081 CDCA7LQ96GN5 454 aa21.68■■□□□ 1.06
HLA-A-208ENST00000496081 ZNF521Q96K83 1311 aa21.68■■□□□ 1.06
HLA-A-208ENST00000496081 NEFLP07196 543 aa21.67■■□□□ 1.06
HLA-A-208ENST00000496081 FKBP8Q14318 412 aa21.67■■□□□ 1.06
HLA-A-208ENST00000496081 RUNDC1Q96C34 613 aa21.67■■□□□ 1.06
HLA-A-208ENST00000496081 PHF8Q9UPP1 1060 aa21.67■■□□□ 1.06
HLA-A-208ENST00000496081 EMILIN1Q9Y6C2 1016 aa21.67■■□□□ 1.06
HLA-A-208ENST00000496081 ZNF335Q9H4Z2 1342 aaPredicted RBP21.67■■□□□ 1.06
HLA-A-208ENST00000496081 PPM1GO15355 546 aaPredicted RBP21.66■■□□□ 1.06
HLA-A-208ENST00000496081 DIAPH1O60610 1272 aaKnown RBP21.66■■□□□ 1.06
HLA-A-208ENST00000496081 U2SURPO15042 1029 aaKnown RBP21.64■■□□□ 1.06
HLA-A-208ENST00000496081 RRS1Q15050 365 aaKnown RBP21.64■■□□□ 1.06
HLA-A-208ENST00000496081 NGEFQ8N5V2 710 aa21.64■■□□□ 1.06
HLA-A-208ENST00000496081 USP31Q70CQ4 1352 aa21.64■■□□□ 1.05
HLA-A-208ENST00000496081 CDK12Q9NYV4 1490 aaPredicted RBP21.64■■□□□ 1.05
HLA-A-208ENST00000496081 PIK3C2AO00443 1686 aa21.64■■□□□ 1.05
HLA-A-208ENST00000496081 C19orf44Q9H6X5 657 aa21.64■■□□□ 1.05
HLA-A-208ENST00000496081 IQSEC2Q5JU85 1478 aa21.63■■□□□ 1.05
HLA-A-208ENST00000496081 ESCO1Q5FWF5 840 aa21.63■■□□□ 1.05
HLA-A-208ENST00000496081 TMEM94Q12767 1356 aa21.62■■□□□ 1.05
HLA-A-208ENST00000496081 TCP11L2Q8N4U5 519 aa21.61■■□□□ 1.05
HLA-A-208ENST00000496081 NCOA3Q9Y6Q9 1424 aa21.6■■□□□ 1.05
HLA-A-208ENST00000496081 GOLGA2Q08379 1002 aa21.6■■□□□ 1.05
HLA-A-208ENST00000496081 PLEKHF1Q96S99 279 aa21.59■■□□□ 1.05
HLA-A-208ENST00000496081 ORAI2Q96SN7 254 aa21.59■■□□□ 1.05
HLA-A-208ENST00000496081 IL13P35225 146 aa21.58■■□□□ 1.04
HLA-A-208ENST00000496081 USP54Q70EL1 1684 aa21.58■■□□□ 1.04
HLA-A-208ENST00000496081 MARF1Q9Y4F3 1742 aaKnown RBP21.57■■□□□ 1.04
HLA-A-208ENST00000496081 C1orf167Q5SNV9 1468 aa21.56■■□□□ 1.04
HLA-A-208ENST00000496081 PAK3O75914 559 aaPredicted RBP21.56■■□□□ 1.04
HLA-A-208ENST00000496081 NLRP6P59044 892 aa21.56■■□□□ 1.04
HLA-A-208ENST00000496081 WWC1Q8IX03 1113 aa21.56■■□□□ 1.04
HLA-A-208ENST00000496081 RRP7AQ9Y3A4 280 aaKnown RBP21.56■■□□□ 1.04
HLA-A-208ENST00000496081 RNF123Q5XPI4 1314 aa21.56■■□□□ 1.04
HLA-A-208ENST00000496081 PSME1Q06323 249 aa21.56■■□□□ 1.04
HLA-A-208ENST00000496081 PEAK1Q9H792 1746 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 DCCP43146 1447 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 SLFN5Q08AF3 891 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 NEUROD2Q15784 382 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 DUSP27Q5VZP5 1158 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 ABTB2Q8N961 1025 aa21.55■■□□□ 1.04
HLA-A-208ENST00000496081 PHF23Q9BUL5 403 aaPredicted RBP21.55■■□□□ 1.04
HLA-A-208ENST00000496081 SOX12O15370 315 aa21.54■■□□□ 1.04
HLA-A-208ENST00000496081 FCHSD2O94868 740 aa21.54■■□□□ 1.04
HLA-A-208ENST00000496081 IRX6P78412 446 aaPredicted RBP21.54■■□□□ 1.04
HLA-A-208ENST00000496081 NCBP3Q53F19 620 aaKnown RBP21.54■■□□□ 1.04
HLA-A-208ENST00000496081 NUTM2GQ5VZR2 741 aa21.53■■□□□ 1.04
HLA-A-208ENST00000496081 TRMT2AQ8IZ69 625 aaKnown RBP21.53■■□□□ 1.04
HLA-A-208ENST00000496081 ATF3P18847 181 aa21.53■■□□□ 1.04
HLA-A-208ENST00000496081 CCDC27Q2M243 656 aa21.53■■□□□ 1.04
HLA-A-208ENST00000496081 PNNQ9H307 717 aaKnown RBP21.53■■□□□ 1.04
HLA-A-208ENST00000496081 SPINK5Q9NQ38 1064 aaPredicted RBP21.53■■□□□ 1.04
HLA-A-208ENST00000496081 RCAN3Q9UKA8 241 aa21.53■■□□□ 1.04
HLA-A-208ENST00000496081 MST1RQ04912 1400 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 LRRC7Q96NW7 1537 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 FOXO3O43524 673 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 RSPH6AQ9H0K4 717 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 XIRP1Q702N8 1843 aaKnown RBP21.52■■□□□ 1.04
HLA-A-208ENST00000496081 LTBP4Q8N2S1 1624 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 MAP3K19Q56UN5 1328 aa21.52■■□□□ 1.04
HLA-A-208ENST00000496081 KIF1AQ12756 1690 aa21.52■■□□□ 1.03
HLA-A-208ENST00000496081 MAPK8IP3Q9UPT6 1336 aa21.51■■□□□ 1.03
HLA-A-208ENST00000496081 E9PSI1 815 aa21.5■■□□□ 1.03
HLA-A-208ENST00000496081 HMOX1P09601 288 aa21.49■■□□□ 1.03
HLA-A-208ENST00000496081 TMPOP42166 694 aaKnown RBP21.49■■□□□ 1.03
HLA-A-208ENST00000496081 EIF4A2Q14240 407 aaKnown RBP21.49■■□□□ 1.03
HLA-A-208ENST00000496081 HSP90AB2PQ58FF8 381 aa21.49■■□□□ 1.03
HLA-A-208ENST00000496081 SBNO1A3KN83 1393 aa21.49■■□□□ 1.03
HLA-A-208ENST00000496081 PRKAR2BP31323 418 aa21.48■■□□□ 1.03
HLA-A-208ENST00000496081 CADPS2Q86UW7 1296 aa21.48■■□□□ 1.03
HLA-A-208ENST00000496081 MSH6P52701 1360 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms