RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	SLC12A5	Q9H2X9	1139 aa		13.76	□□□□□ -0.21
CALD1-223	ENST00000496024	SLC24A1	O60721	1099 aa		13.75	□□□□□ -0.21
CALD1-223	ENST00000496024	EIF4G2	P78344	907 aa	Known RBP eCLIP	13.75	□□□□□ -0.21
CALD1-223	ENST00000496024	ALS2	Q96Q42	1657 aa		13.75	□□□□□ -0.21
CALD1-223	ENST00000496024	AFF2	P51816	1311 aa		13.74	□□□□□ -0.21
CALD1-223	ENST00000496024	ILDR2	Q71H61	639 aa		13.74	□□□□□ -0.21
CALD1-223	ENST00000496024	ABTB2	Q8N961	1025 aa		13.74	□□□□□ -0.21
CALD1-223	ENST00000496024	POLR3GL	Q9BT43	218 aa		13.74	□□□□□ -0.21
CALD1-223	ENST00000496024	USP6	P35125	1406 aa		13.73	□□□□□ -0.21
CALD1-223	ENST00000496024	KTN1	Q86UP2	1357 aa	Known RBP	13.72	□□□□□ -0.21
CALD1-223	ENST00000496024	POTEA	Q6S8J7	498 aa		13.72	□□□□□ -0.21
CALD1-223	ENST00000496024	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	13.72	□□□□□ -0.21
CALD1-223	ENST00000496024	ZNF692	Q9BU19	519 aa	Predicted RBP	13.72	□□□□□ -0.21
CALD1-223	ENST00000496024	AKAP12	Q02952	1782 aa		13.72	□□□□□ -0.21
CALD1-223	ENST00000496024	ABCA3	Q99758	1704 aa		13.71	□□□□□ -0.21
CALD1-223	ENST00000496024	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
CALD1-223	ENST00000496024	PUS7	Q96PZ0	661 aa	Known RBP	13.71	□□□□□ -0.21
CALD1-223	ENST00000496024	MARF1	Q9Y4F3	1742 aa	Known RBP	13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	TTC21B	Q7Z4L5	1316 aa		13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	NLRP6	P59044	892 aa		13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	CDCA8	Q53HL2	280 aa		13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	ZNF772	Q68DY9	489 aa	Predicted RBP	13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	TERF2IP	Q9NYB0	399 aa		13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	CPSF1	Q10570	1443 aa	Known RBP	13.7	□□□□□ -0.22
CALD1-223	ENST00000496024	USP21	Q9UK80	565 aa		13.69	□□□□□ -0.22
CALD1-223	ENST00000496024	CD163L1	Q9NR16	1453 aa		13.68	□□□□□ -0.22
CALD1-223	ENST00000496024	ZC3H6	P61129	1189 aa	Known RBP	13.68	□□□□□ -0.22
CALD1-223	ENST00000496024	NLRP13	Q86W25	1043 aa		13.68	□□□□□ -0.22
CALD1-223	ENST00000496024		A0A1W2PP64	1363 aa		13.68	□□□□□ -0.22
CALD1-223	ENST00000496024	BRD4	O60885	1362 aa	Predicted RBP	13.68	□□□□□ -0.22
CALD1-223	ENST00000496024	MON2	Q7Z3U7	1717 aa		13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	SSH2	Q76I76	1423 aa		13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	ZBTB7C	A1YPR0	619 aa		13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	FAM83G	A6ND36	823 aa		13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	QTRT2	Q9H974	415 aa	Known RBP	13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	ZRANB1	Q9UGI0	708 aa		13.67	□□□□□ -0.22
CALD1-223	ENST00000496024	PIK3C2A	O00443	1686 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	PHRF1	Q9P1Y6	1649 aa	Known RBP	13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	SOX12	O15370	315 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	CHRNA2	Q15822	529 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	PRDM11	Q9NQV5	511 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	CRYBG1	Q9Y4K1	1723 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	NINL	Q9Y2I6	1382 aa		13.66	□□□□□ -0.22
CALD1-223	ENST00000496024	TTC21A	Q8NDW8	1320 aa		13.65	□□□□□ -0.22
CALD1-223	ENST00000496024	NME9	Q86XW9	330 aa		13.65	□□□□□ -0.22
CALD1-223	ENST00000496024	NRK	Q7Z2Y5	1582 aa		13.65	□□□□□ -0.22
CALD1-223	ENST00000496024	USP19	O94966	1318 aa		13.64	□□□□□ -0.23
CALD1-223	ENST00000496024	KIAA0232	Q92628	1395 aa		13.64	□□□□□ -0.23
CALD1-223	ENST00000496024	C11orf95	C9JLR9	678 aa	Predicted RBP	13.64	□□□□□ -0.23
CALD1-223	ENST00000496024	GC	P02774	474 aa		13.64	□□□□□ -0.23
CALD1-223	ENST00000496024	EDC4	Q6P2E9	1401 aa	Known RBP	13.64	□□□□□ -0.23
CALD1-223	ENST00000496024	PLCH1	Q4KWH8	1693 aa		13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	ANKRD36B	Q8N2N9	1353 aa		13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	RXRB	P28702	533 aa		13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	BTG4	Q9NY30	223 aa		13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	TRPC5	Q9UL62	973 aa	Predicted RBP	13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	MYOM1	P52179	1685 aa		13.63	□□□□□ -0.23
CALD1-223	ENST00000496024	BCL9L	Q86UU0	1499 aa		13.62	□□□□□ -0.23
CALD1-223	ENST00000496024	UNC5CL	Q8IV45	518 aa		13.62	□□□□□ -0.23
CALD1-223	ENST00000496024	CCDC9	Q9Y3X0	531 aa	Known RBP	13.62	□□□□□ -0.23
CALD1-223	ENST00000496024	SLIT2	O94813	1529 aa		13.62	□□□□□ -0.23
CALD1-223	ENST00000496024	COL14A1	Q05707	1796 aa	Known RBP	13.61	□□□□□ -0.23
CALD1-223	ENST00000496024	RBM6	P78332	1123 aa	Known RBP	13.6	□□□□□ -0.23
CALD1-223	ENST00000496024	STRN4	Q9NRL3	753 aa		13.6	□□□□□ -0.23
CALD1-223	ENST00000496024	SLIT3	O75094	1523 aa		13.59	□□□□□ -0.23
CALD1-223	ENST00000496024	NWD2	Q9ULI1	1742 aa		13.59	□□□□□ -0.23
CALD1-223	ENST00000496024	ATRN	O75882	1429 aa		13.59	□□□□□ -0.23
CALD1-223	ENST00000496024	KCNH5	Q8NCM2	988 aa		13.59	□□□□□ -0.23
CALD1-223	ENST00000496024	CARD14	Q9BXL6	1004 aa		13.59	□□□□□ -0.23
CALD1-223	ENST00000496024	USP31	Q70CQ4	1352 aa		13.58	□□□□□ -0.23
CALD1-223	ENST00000496024	NSD3	Q9BZ95	1437 aa		13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	EVA1C	P58658	441 aa		13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	GJD4	Q96KN9	370 aa	Predicted RBP	13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	GGNBP2	Q9H3C7	697 aa		13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	KIF7	Q2M1P5	1343 aa		13.58	□□□□□ -0.24
CALD1-223	ENST00000496024	VPS72	Q15906	364 aa		13.57	□□□□□ -0.24
CALD1-223	ENST00000496024	COG3	Q96JB2	828 aa		13.57	□□□□□ -0.24
CALD1-223	ENST00000496024	PANK3	Q9H999	370 aa		13.57	□□□□□ -0.24
CALD1-223	ENST00000496024	CPD	O75976	1380 aa		13.57	□□□□□ -0.24
CALD1-223	ENST00000496024	NRAP	Q86VF7	1730 aa		13.56	□□□□□ -0.24
CALD1-223	ENST00000496024	FYB1	O15117	783 aa		13.56	□□□□□ -0.24
CALD1-223	ENST00000496024	FBLN1	P23142	703 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	ARHGEF25	Q86VW2	580 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	CAMTA1	Q9Y6Y1	1673 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	KIF20B	Q96Q89	1820 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	OVOS2	A0A0J9YW53	1432 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	OVOS2	Q6IE36	1432 aa		13.55	□□□□□ -0.24
CALD1-223	ENST00000496024	NFAT5	O94916	1531 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	USP54	Q70EL1	1684 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	RGPD5	Q99666	1765 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024		A0A0G2JS52	829 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	MYT1	Q01538	1121 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	USP35	Q9P2H5	1018 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	GLI3	P10071	1580 aa		13.54	□□□□□ -0.24
CALD1-223	ENST00000496024	SOCS7	O14512	581 aa		13.53	□□□□□ -0.24
CALD1-223	ENST00000496024	LARP1	Q6PKG0	1096 aa	Known RBP	13.53	□□□□□ -0.24
CALD1-223	ENST00000496024	AXIN2	Q9Y2T1	843 aa		13.53	□□□□□ -0.24
CALD1-223	ENST00000496024	RGS12	O14924	1447 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms