RNA–Protein interactions for RNA: ENST00000494623.1

CHMP3-209, Transcript of charged multivesicular body protein 3, humanhuman

TSL 2

Gene CHMP3, Length 2,724 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-209ENST00000494623 DDRGK1Q96HY6 314 aa14.41□□□□□ -0.1
CHMP3-209ENST00000494623 TRIM35Q9UPQ4 493 aa14.41□□□□□ -0.1
CHMP3-209ENST00000494623 ESF1Q9H501 851 aaKnown RBP14.41□□□□□ -0.1
CHMP3-209ENST00000494623 RIMS2Q9UQ26 1411 aa14.41□□□□□ -0.1
CHMP3-209ENST00000494623 A2ML1A8K2U0 1454 aa14.4□□□□□ -0.1
CHMP3-209ENST00000494623 RIPK4P57078 832 aa14.4□□□□□ -0.1
CHMP3-209ENST00000494623 EXOSC9Q06265 439 aaKnown RBP14.4□□□□□ -0.1
CHMP3-209ENST00000494623 ARHGEF40Q8TER5 1519 aa14.4□□□□□ -0.1
CHMP3-209ENST00000494623 CLTCQ00610 1675 aaKnown RBP14.4□□□□□ -0.1
CHMP3-209ENST00000494623 RTL5Q5HYW3 569 aaPredicted RBP14.39□□□□□ -0.11
CHMP3-209ENST00000494623 PCDHB15Q9Y5E8 787 aa14.39□□□□□ -0.11
CHMP3-209ENST00000494623 DEKP35659 375 aaKnown RBP14.39□□□□□ -0.11
CHMP3-209ENST00000494623 SLC4A3P48751 1232 aa14.39□□□□□ -0.11
CHMP3-209ENST00000494623 TXNDC2Q86VQ3 553 aa14.38□□□□□ -0.11
CHMP3-209ENST00000494623 PMFBP1Q8TBY8 1022 aa14.38□□□□□ -0.11
CHMP3-209ENST00000494623 NLRP1Q9C000 1473 aa14.38□□□□□ -0.11
CHMP3-209ENST00000494623 AGLP35573 1532 aa14.38□□□□□ -0.11
CHMP3-209ENST00000494623 ZKSCAN2Q63HK3 967 aa14.37□□□□□ -0.11
CHMP3-209ENST00000494623 COL3A1P02461 1466 aaPredicted RBP14.37□□□□□ -0.11
CHMP3-209ENST00000494623 SMC4Q9NTJ3 1288 aa14.37□□□□□ -0.11
CHMP3-209ENST00000494623 POLKQ9UBT6 870 aa14.37□□□□□ -0.11
CHMP3-209ENST00000494623 FTSJ3Q8IY81 847 aaKnown RBP14.36□□□□□ -0.11
CHMP3-209ENST00000494623 PNNQ9H307 717 aaKnown RBP14.36□□□□□ -0.11
CHMP3-209ENST00000494623 DAXXQ9UER7 740 aaPredicted RBP14.36□□□□□ -0.11
CHMP3-209ENST00000494623 MED14O60244 1454 aa14.36□□□□□ -0.11
CHMP3-209ENST00000494623 DZIP1LQ8IYY4 767 aaKnown RBP14.35□□□□□ -0.11
CHMP3-209ENST00000494623 ADGRB2O60241 1585 aa14.35□□□□□ -0.11
CHMP3-209ENST00000494623 WASLO00401 505 aaPredicted RBP14.35□□□□□ -0.11
CHMP3-209ENST00000494623 ZMYM3Q14202 1370 aa14.35□□□□□ -0.11
CHMP3-209ENST00000494623 PNPLA6Q8IY17 1366 aa14.35□□□□□ -0.11
CHMP3-209ENST00000494623 AAMPQ13685 434 aa14.35□□□□□ -0.11
CHMP3-209ENST00000494623 MVPQ14764 893 aaKnown RBP14.35□□□□□ -0.11
CHMP3-209ENST00000494623 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.35□□□□□ -0.11
CHMP3-209ENST00000494623 SSH1Q8WYL5 1049 aa14.35□□□□□ -0.11
CHMP3-209ENST00000494623 METP08581 1390 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 FCHSD2O94868 740 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 CT47B1P0C2W7 299 aaPredicted RBP14.34□□□□□ -0.11
CHMP3-209ENST00000494623 PRKAR2BP31323 418 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 SPATA31D1Q6ZQQ2 1576 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 REREQ9P2R6 1566 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 NCKAP5LQ9HCH0 1330 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 NEFMP07197 916 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 HMOX1P09601 288 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 NME9Q86XW9 330 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 RWDD1Q9H446 243 aaPredicted RBP14.34□□□□□ -0.11
CHMP3-209ENST00000494623 ZRANB1Q9UGI0 708 aa14.34□□□□□ -0.11
CHMP3-209ENST00000494623 NUDT16Q96DE0 195 aaKnown RBP14.32□□□□□ -0.12
CHMP3-209ENST00000494623 NOB1Q9ULX3 412 aaKnown RBP14.32□□□□□ -0.12
CHMP3-209ENST00000494623 PDZRN3Q9UPQ7 1066 aa14.32□□□□□ -0.12
CHMP3-209ENST00000494623 EMILIN1Q9Y6C2 1016 aa14.32□□□□□ -0.12
CHMP3-209ENST00000494623 HDGFP51858 240 aaKnown RBP14.32□□□□□ -0.12
CHMP3-209ENST00000494623 DLC1Q96QB1 1528 aa14.32□□□□□ -0.12
CHMP3-209ENST00000494623 IL16Q14005 1332 aa14.32□□□□□ -0.12
CHMP3-209ENST00000494623 ANKRD26Q9UPS8 1709 aa14.31□□□□□ -0.12
CHMP3-209ENST00000494623 TRIM27P14373 513 aa14.31□□□□□ -0.12
CHMP3-209ENST00000494623 RSPH6AQ9H0K4 717 aa14.31□□□□□ -0.12
CHMP3-209ENST00000494623 PPIP5K1Q6PFW1 1433 aa14.31□□□□□ -0.12
CHMP3-209ENST00000494623 PHACTR3Q96KR7 559 aa14.31□□□□□ -0.12
CHMP3-209ENST00000494623 SEC24BO95487 1268 aa14.3□□□□□ -0.12
CHMP3-209ENST00000494623 ITPRIPQ8IWB1 547 aa14.3□□□□□ -0.12
CHMP3-209ENST00000494623 ATF7IPQ6VMQ6 1270 aa14.3□□□□□ -0.12
CHMP3-209ENST00000494623 ATP7BP35670 1465 aa14.3□□□□□ -0.12
CHMP3-209ENST00000494623 CCDC61Q9Y6R9 512 aa14.29□□□□□ -0.12
CHMP3-209ENST00000494623 THUMPD2Q9BTF0 503 aaKnown RBP14.29□□□□□ -0.12
CHMP3-209ENST00000494623 KIF20BQ96Q89 1820 aa14.28□□□□□ -0.12
CHMP3-209ENST00000494623 RRS1Q15050 365 aaKnown RBP14.28□□□□□ -0.12
CHMP3-209ENST00000494623 COG3Q96JB2 828 aa14.28□□□□□ -0.12
CHMP3-209ENST00000494623 CPSF1Q10570 1443 aaKnown RBP14.27□□□□□ -0.12
CHMP3-209ENST00000494623 IL13P35225 146 aa14.27□□□□□ -0.12
CHMP3-209ENST00000494623 NFE2L2Q16236 605 aa14.27□□□□□ -0.12
CHMP3-209ENST00000494623 DDX19BQ9UMR2 479 aa14.27□□□□□ -0.12
CHMP3-209ENST00000494623 EDC4Q6P2E9 1401 aaKnown RBP14.27□□□□□ -0.13
CHMP3-209ENST00000494623 TMEM57Q8N5G2 664 aa14.27□□□□□ -0.13
CHMP3-209ENST00000494623 SETD1AO15047 1707 aaKnown RBP14.26□□□□□ -0.13
CHMP3-209ENST00000494623 NUTM2FA1L443 756 aa14.26□□□□□ -0.13
CHMP3-209ENST00000494623 IPO8O15397 1037 aaKnown RBP14.26□□□□□ -0.13
CHMP3-209ENST00000494623 TNRQ92752 1358 aa14.26□□□□□ -0.13
CHMP3-209ENST00000494623 USP19O94966 1318 aa14.26□□□□□ -0.13
CHMP3-209ENST00000494623 NRXN3Q9Y4C0 1643 aa14.25□□□□□ -0.13
CHMP3-209ENST00000494623 LRRC7Q96NW7 1537 aa14.25□□□□□ -0.13
CHMP3-209ENST00000494623 FAM135BQ49AJ0 1406 aa14.25□□□□□ -0.13
CHMP3-209ENST00000494623 SIRT1Q96EB6 747 aa14.25□□□□□ -0.13
CHMP3-209ENST00000494623 USP35Q9P2H5 1018 aa14.25□□□□□ -0.13
CHMP3-209ENST00000494623 MAP2P11137 1827 aaKnown RBP14.25□□□□□ -0.13
CHMP3-209ENST00000494623 ELL2O00472 640 aaPredicted RBP14.24□□□□□ -0.13
CHMP3-209ENST00000494623 PLPPR3Q6T4P5 718 aa14.24□□□□□ -0.13
CHMP3-209ENST00000494623 PRR36Q9H6K5 1346 aa14.24□□□□□ -0.13
CHMP3-209ENST00000494623 ALDH1L2Q3SY69 923 aa14.23□□□□□ -0.13
CHMP3-209ENST00000494623 ZNF692Q9BU19 519 aaPredicted RBP14.23□□□□□ -0.13
CHMP3-209ENST00000494623 KIF16BQ96L93 1317 aa14.23□□□□□ -0.13
CHMP3-209ENST00000494623 TMEM2Q9UHN6 1383 aa14.23□□□□□ -0.13
CHMP3-209ENST00000494623 CEBPAP49715 358 aaPredicted RBP14.22□□□□□ -0.13
CHMP3-209ENST00000494623 CPS1P31327 1500 aa14.22□□□□□ -0.13
CHMP3-209ENST00000494623 VAMP4O75379 141 aa14.22□□□□□ -0.13
CHMP3-209ENST00000494623 HDAC1Q13547 482 aaPredicted RBP14.22□□□□□ -0.13
CHMP3-209ENST00000494623 TSPYL6Q8N831 410 aa14.22□□□□□ -0.13
CHMP3-209ENST00000494623 ZBTB40Q9NUA8 1239 aa14.22□□□□□ -0.13
CHMP3-209ENST00000494623 ROBO2Q9HCK4 1378 aa14.22□□□□□ -0.13
CHMP3-209ENST00000494623 LTKP29376 864 aa14.21□□□□□ -0.13
CHMP3-209ENST00000494623 CALD1Q05682 793 aaKnown RBP14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms