RNA–Protein interactions for RNA: ENST00000493945.5

ACTB-213, Transcript of actin beta, humanhuman

TSL 5

Gene ACTB, Length 1,236 nt, Biotype retained intron, Subcellular localisation Cell leading edge, Cytoplasm, Cytosol, Exosome, Lamellipodium, Mitochondria, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTB-213ENST00000493945 PAK3O75914 559 aaPredicted RBP20.41■□□□□ 0.86
ACTB-213ENST00000493945 NSD2O96028 1365 aa20.41■□□□□ 0.86
ACTB-213ENST00000493945 DDX10Q13206 875 aaKnown RBP20.4■□□□□ 0.86
ACTB-213ENST00000493945 TNS3Q68CZ2 1445 aa20.4■□□□□ 0.86
ACTB-213ENST00000493945 PXDNQ92626 1479 aa20.4■□□□□ 0.86
ACTB-213ENST00000493945 TRPM3Q9HCF6 1732 aaPredicted RBP20.4■□□□□ 0.86
ACTB-213ENST00000493945 SOS2Q07890 1332 aaPredicted RBP20.39■□□□□ 0.85
ACTB-213ENST00000493945 LRRC59Q96AG4 307 aaKnown RBP20.38■□□□□ 0.85
ACTB-213ENST00000493945 TTC21BQ7Z4L5 1316 aa20.37■□□□□ 0.85
ACTB-213ENST00000493945 ANKRD26Q9UPS8 1709 aa20.36■□□□□ 0.85
ACTB-213ENST00000493945 FBXO41Q8TF61 875 aa20.36■□□□□ 0.85
ACTB-213ENST00000493945 ALS2Q96Q42 1657 aa20.35■□□□□ 0.85
ACTB-213ENST00000493945 COL16A1Q07092 1604 aaPredicted RBP20.35■□□□□ 0.85
ACTB-213ENST00000493945 LMOD2Q6P5Q4 547 aa20.35■□□□□ 0.85
ACTB-213ENST00000493945 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.35■□□□□ 0.85
ACTB-213ENST00000493945 NPC1L1Q9UHC9 1359 aa20.34■□□□□ 0.85
ACTB-213ENST00000493945 XPCQ01831 940 aaPredicted RBP20.34■□□□□ 0.85
ACTB-213ENST00000493945 ABTB2Q8N961 1025 aa20.34■□□□□ 0.85
ACTB-213ENST00000493945 SSH2Q76I76 1423 aa20.34■□□□□ 0.85
ACTB-213ENST00000493945 SPATA31A3Q5VYP0 1347 aa20.33■□□□□ 0.85
ACTB-213ENST00000493945 USP54Q70EL1 1684 aa20.33■□□□□ 0.85
ACTB-213ENST00000493945 NLRP13Q86W25 1043 aa20.33■□□□□ 0.85
ACTB-213ENST00000493945 COG3Q96JB2 828 aa20.33■□□□□ 0.85
ACTB-213ENST00000493945 PIK3C2AO00443 1686 aa20.32■□□□□ 0.84
ACTB-213ENST00000493945 MED1Q15648 1581 aaPredicted RBP20.31■□□□□ 0.84
ACTB-213ENST00000493945 SHPRHQ149N8 1683 aa20.3■□□□□ 0.84
ACTB-213ENST00000493945 DDX17Q92841 729 aaKnown RBP20.3■□□□□ 0.84
ACTB-213ENST00000493945 CARD14Q9BXL6 1004 aa20.3■□□□□ 0.84
ACTB-213ENST00000493945 USP31Q70CQ4 1352 aa20.3■□□□□ 0.84
ACTB-213ENST00000493945 HAP1P54257 671 aaPredicted RBP20.29■□□□□ 0.84
ACTB-213ENST00000493945 NLRP6P59044 892 aa20.29■□□□□ 0.84
ACTB-213ENST00000493945 JCADQ9P266 1359 aa20.29■□□□□ 0.84
ACTB-213ENST00000493945 COL22A1Q8NFW1 1626 aaPredicted RBP20.28■□□□□ 0.84
ACTB-213ENST00000493945 KCNH5Q8NCM2 988 aa20.28■□□□□ 0.84
ACTB-213ENST00000493945 PER1O15534 1290 aaPredicted RBP20.27■□□□□ 0.84
ACTB-213ENST00000493945 OVOS2A0A0J9YW53 1432 aa20.27■□□□□ 0.83
ACTB-213ENST00000493945 OVOS2Q6IE36 1432 aa20.27■□□□□ 0.83
ACTB-213ENST00000493945 NME9Q86XW9 330 aa20.26■□□□□ 0.83
ACTB-213ENST00000493945 FYB1O15117 783 aa20.25■□□□□ 0.83
ACTB-213ENST00000493945 ANP32CO43423 234 aa20.25■□□□□ 0.83
ACTB-213ENST00000493945 AMER1Q5JTC6 1135 aaPredicted RBP20.25■□□□□ 0.83
ACTB-213ENST00000493945 MORC1Q86VD1 984 aa20.25■□□□□ 0.83
ACTB-213ENST00000493945 PHRF1Q9P1Y6 1649 aaKnown RBP20.24■□□□□ 0.83
ACTB-213ENST00000493945 PNPLA6Q8IY17 1366 aa20.24■□□□□ 0.83
ACTB-213ENST00000493945 RALBP1Q15311 655 aa20.24■□□□□ 0.83
ACTB-213ENST00000493945 GGNBP2Q9H3C7 697 aa20.24■□□□□ 0.83
ACTB-213ENST00000493945 HSPA1LP34931 641 aa20.23■□□□□ 0.83
ACTB-213ENST00000493945 CC2D1BQ5T0F9 858 aaKnown RBP20.23■□□□□ 0.83
ACTB-213ENST00000493945 USP19O94966 1318 aa20.23■□□□□ 0.83
ACTB-213ENST00000493945 SPATA31A6Q5VVP1 1343 aa20.23■□□□□ 0.83
ACTB-213ENST00000493945 SLIT3O75094 1523 aa20.22■□□□□ 0.83
ACTB-213ENST00000493945 ABCA3Q99758 1704 aa20.22■□□□□ 0.83
ACTB-213ENST00000493945 NUTM2GQ5VZR2 741 aa20.21■□□□□ 0.83
ACTB-213ENST00000493945 DIEXFQ68CQ4 756 aaKnown RBP20.21■□□□□ 0.83
ACTB-213ENST00000493945 CRYBG1Q9Y4K1 1723 aa20.2■□□□□ 0.82
ACTB-213ENST00000493945 MARF1Q9Y4F3 1742 aaKnown RBP20.19■□□□□ 0.82
ACTB-213ENST00000493945 AATKQ6ZMQ8 1374 aa20.18■□□□□ 0.82
ACTB-213ENST00000493945 PARD3Q8TEW0 1356 aa20.17■□□□□ 0.82
ACTB-213ENST00000493945 ABCC6O95255 1503 aa20.17■□□□□ 0.82
ACTB-213ENST00000493945 GCP02774 474 aa20.16■□□□□ 0.82
ACTB-213ENST00000493945 CNGB1Q14028 1251 aaPredicted RBP20.16■□□□□ 0.82
ACTB-213ENST00000493945 KIF24Q5T7B8 1368 aa20.16■□□□□ 0.82
ACTB-213ENST00000493945 LTN1O94822 1766 aa20.16■□□□□ 0.82
ACTB-213ENST00000493945 RTL1A6NKG5 1358 aa20.15■□□□□ 0.82
ACTB-213ENST00000493945 MAP2P11137 1827 aaKnown RBP20.14■□□□□ 0.81
ACTB-213ENST00000493945 NFAT5O94916 1531 aa20.14■□□□□ 0.81
ACTB-213ENST00000493945 PLEKHG5O94827 1062 aa20.14■□□□□ 0.81
ACTB-213ENST00000493945 CPDO75976 1380 aa20.13■□□□□ 0.81
ACTB-213ENST00000493945 MYBBP1AQ9BQG0 1328 aaKnown RBP20.13■□□□□ 0.81
ACTB-213ENST00000493945 SOX12O15370 315 aa20.13■□□□□ 0.81
ACTB-213ENST00000493945 PRKRIP1Q9H875 184 aaPredicted RBP20.13■□□□□ 0.81
ACTB-213ENST00000493945 TNNT2P45379 298 aaPredicted RBP20.12■□□□□ 0.81
ACTB-213ENST00000493945 CFAP53Q96M91 514 aa20.12■□□□□ 0.81
ACTB-213ENST00000493945 PRDM11Q9NQV5 511 aa20.12■□□□□ 0.81
ACTB-213ENST00000493945 ZRANB1Q9UGI0 708 aa20.12■□□□□ 0.81
ACTB-213ENST00000493945 AMPHP49418 695 aa20.11■□□□□ 0.81
ACTB-213ENST00000493945 MEX3CQ5U5Q3 659 aaKnown RBP20.11■□□□□ 0.81
ACTB-213ENST00000493945 COL14A1Q05707 1796 aaKnown RBP20.11■□□□□ 0.81
ACTB-213ENST00000493945 SMG6Q86US8 1419 aaKnown RBP20.1■□□□□ 0.81
ACTB-213ENST00000493945 FLT4P35916 1363 aa20.1■□□□□ 0.81
ACTB-213ENST00000493945 CABLES1Q8TDN4 633 aa20.1■□□□□ 0.81
ACTB-213ENST00000493945 NUTM2BA6NNL0 878 aaPredicted RBP20.09■□□□□ 0.81
ACTB-213ENST00000493945 NUTM2EB1AL46 878 aaPredicted RBP20.09■□□□□ 0.81
ACTB-213ENST00000493945 NUTM2AQ8IVF1 878 aaPredicted RBP20.09■□□□□ 0.81
ACTB-213ENST00000493945 CDK12Q9NYV4 1490 aaPredicted RBP20.09■□□□□ 0.81
ACTB-213ENST00000493945 ZBTB7CA1YPR0 619 aa20.08■□□□□ 0.81
ACTB-213ENST00000493945 BLMP54132 1417 aaPredicted RBP20.08■□□□□ 0.8
ACTB-213ENST00000493945 KIAA0232Q92628 1395 aa20.08■□□□□ 0.8
ACTB-213ENST00000493945 PPM1GO15355 546 aaPredicted RBP20.07■□□□□ 0.8
ACTB-213ENST00000493945 ZC3H6P61129 1189 aaKnown RBP20.07■□□□□ 0.8
ACTB-213ENST00000493945 PPP2R1AP30153 589 aa20.06■□□□□ 0.8
ACTB-213ENST00000493945 ARHGEF25Q86VW2 580 aa20.06■□□□□ 0.8
ACTB-213ENST00000493945 MAP3K19Q56UN5 1328 aa20.05■□□□□ 0.8
ACTB-213ENST00000493945 NWD2Q9ULI1 1742 aa20.05■□□□□ 0.8
ACTB-213ENST00000493945 RRS1Q15050 365 aaKnown RBP20.05■□□□□ 0.8
ACTB-213ENST00000493945 FAM208AQ9UK61 1670 aaKnown RBP20.05■□□□□ 0.8
ACTB-213ENST00000493945 ADAMTS2O95450 1211 aa20.04■□□□□ 0.8
ACTB-213ENST00000493945 PLCH1Q4KWH8 1693 aa20.03■□□□□ 0.8
ACTB-213ENST00000493945 POLKQ9UBT6 870 aa20.03■□□□□ 0.8
ACTB-213ENST00000493945 MTHFSP49914 203 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms