RNA–Protein interactions for RNA: ENST00000493303.1

CSMD3-207, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 5,703 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-207ENST00000493303 SEC24BO95487 1268 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 CANXP27824 592 aaKnown RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 SKIV2LQ15477 1246 aaKnown RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 PPP4R3CPQ6ZMV5 832 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 THEMISQ8N1K5 641 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 GPBP1L1Q9HC44 474 aaPredicted RBP4.47□□□□□ -1.69
CSMD3-207ENST00000493303 SNRKQ9NRH2 765 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 SLAIN2Q9P270 581 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 ANKLE2Q86XL3 938 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 FLAD1Q8NFF5 587 aa4.47□□□□□ -1.69
CSMD3-207ENST00000493303 LRSAM1Q6UWE0 723 aa4.46□□□□□ -1.69
CSMD3-207ENST00000493303 POLR3GLQ9BT43 218 aa4.46□□□□□ -1.69
CSMD3-207ENST00000493303 HTATIP2Q9BUP3 242 aa4.46□□□□□ -1.69
CSMD3-207ENST00000493303 MLH3Q9UHC1 1453 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 UGGT1Q9NYU2 1555 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 REC8O95072 547 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 EIF5P55010 431 aaKnown RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 BRDTQ58F21 947 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 MPHOSPH10O00566 681 aaKnown RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 GTPBP6O43824 516 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 CENPSQ8N2Z9 138 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 HEMK1Q9Y5R4 338 aaPredicted RBP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 MTUS2Q5JR59 1369 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 SETD5Q9C0A6 1442 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 KCNJ4P48050 445 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 TDO2P48775 406 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 BIRC2Q13490 618 aa4.46□□□□□ -1.7
CSMD3-207ENST00000493303 NONOQ15233 471 aaKnown RBP eCLIP4.46□□□□□ -1.7
CSMD3-207ENST00000493303 CAPN2P17655 700 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 PDE6BP35913 854 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 MYO1BO43795 1136 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 CHMP4BQ9H444 224 aaKnown RBP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 NPATQ14207 1427 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 CEP162Q5TB80 1403 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 AK2P54819 239 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 NAP1L1P55209 391 aaKnown RBP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 INTS2Q9H0H0 1204 aaKnown RBP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 NBPF10Q6P3W6 841 aaKnown RBP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 PCDHB13Q9Y5F0 798 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 LRP6O75581 1613 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 CUL5Q93034 780 aa4.45□□□□□ -1.7
CSMD3-207ENST00000493303 CCDC43Q96MW1 224 aaKnown RBP4.45□□□□□ -1.7
CSMD3-207ENST00000493303 ARHGAP23Q9P227 1491 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 UBXN2AP68543 259 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 NFATC2IPQ8NCF5 419 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 EFCAB5A4FU69 1503 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 UBR1Q8IWV7 1749 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 HMGB1P1B2RPK0 211 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-207ENST00000493303 KIF4AO95239 1232 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 E2F5Q15329 346 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 PROSER2Q86WR7 435 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-207ENST00000493303 GAS2L2Q8NHY3 880 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 CHD2O14647 1828 aaKnown RBP4.44□□□□□ -1.7
CSMD3-207ENST00000493303 ABCC1P33527 1531 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 FRAT2O75474 233 aaPredicted RBP4.44□□□□□ -1.7
CSMD3-207ENST00000493303 GRM1Q13255 1194 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 PRIMPOLQ96LW4 560 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 PCDH10Q9P2E7 1040 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 ABT1Q9ULW3 272 aaKnown RBP4.44□□□□□ -1.7
CSMD3-207ENST00000493303 DESP17661 470 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 SLC4A8Q2Y0W8 1093 aa4.44□□□□□ -1.7
CSMD3-207ENST00000493303 DNMT1P26358 1616 aaKnown RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 TAF7LQ5H9L4 462 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 FBXW7Q969H0 707 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 RREB1Q92766 1687 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 MOCOSQ96EN8 888 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 CFAP53Q96M91 514 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 CDK12Q9NYV4 1490 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 CHAF1AQ13111 956 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 USP48Q86UV5 1035 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 CCDC117Q8IWD4 279 aaPredicted RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 VTI1AQ96AJ9 217 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 USP54Q70EL1 1684 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 NCOA1Q15788 1441 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 ATAD2Q6PL18 1390 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 STK25O00506 426 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 GLRX3O76003 335 aaKnown RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 RRP12Q5JTH9 1297 aaKnown RBP4.43□□□□□ -1.7
CSMD3-207ENST00000493303 FERMT2Q96AC1 680 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 SPC25Q9HBM1 224 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 ZEB2O60315 1214 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 PLEKHG5O94827 1062 aa4.43□□□□□ -1.7
CSMD3-207ENST00000493303 USP32Q8NFA0 1604 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 MROH7-TTC4A0A0A0MT08 1334 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 MROH7Q68CQ1 1323 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 GPHNQ9NQX3 736 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 RPRD2Q5VT52 1461 aaKnown RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 ASXL2Q76L83 1435 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 GPRASP1Q5JY77 1395 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 PPEF1O14829 653 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 SUPT20HQ8NEM7 779 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 ARID3AQ99856 593 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 BCL2L13Q9BXK5 485 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 ORC3Q9UBD5 711 aaPredicted RBP4.42□□□□□ -1.7
CSMD3-207ENST00000493303 SLIT1O75093 1534 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 A0A087WZG4 1122 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 CCDC85CA6NKD9 419 aa4.42□□□□□ -1.7
CSMD3-207ENST00000493303 APLP1P51693 650 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms