RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 COL22A1Q8NFW1 1626 aaPredicted RBP23.78■■□□□ 1.4
LIME1-208ENST00000493265 NGDNQ8NEJ9 315 aaKnown RBP23.78■■□□□ 1.4
LIME1-208ENST00000493265 MYOM1P52179 1685 aa23.76■■□□□ 1.39
LIME1-208ENST00000493265 USP21Q9UK80 565 aa23.76■■□□□ 1.39
LIME1-208ENST00000493265 FOXO3O43524 673 aa23.74■■□□□ 1.39
LIME1-208ENST00000493265 ACEP12821 1306 aa23.74■■□□□ 1.39
LIME1-208ENST00000493265 PLEKHG3A1L390 1219 aa23.73■■□□□ 1.39
LIME1-208ENST00000493265 XPCQ01831 940 aaPredicted RBP23.73■■□□□ 1.39
LIME1-208ENST00000493265 MARF1Q9Y4F3 1742 aaKnown RBP23.73■■□□□ 1.39
LIME1-208ENST00000493265 HDGFL2Q7Z4V5 671 aaPredicted RBP23.72■■□□□ 1.39
LIME1-208ENST00000493265 TERF2IPQ9NYB0 399 aa23.72■■□□□ 1.39
LIME1-208ENST00000493265 NINLQ9Y2I6 1382 aa23.72■■□□□ 1.39
LIME1-208ENST00000493265 PXDNQ92626 1479 aa23.72■■□□□ 1.39
LIME1-208ENST00000493265 KIF1AQ12756 1690 aa23.72■■□□□ 1.39
LIME1-208ENST00000493265 NPHP3Q7Z494 1330 aa23.71■■□□□ 1.39
LIME1-208ENST00000493265 DDX10Q13206 875 aaKnown RBP23.71■■□□□ 1.39
LIME1-208ENST00000493265 TRPC5Q9UL62 973 aaPredicted RBP23.71■■□□□ 1.39
LIME1-208ENST00000493265 PSME1Q06323 249 aa23.7■■□□□ 1.38
LIME1-208ENST00000493265 PANK3Q9H999 370 aa23.7■■□□□ 1.38
LIME1-208ENST00000493265 A0A1W2PP64 1363 aa23.69■■□□□ 1.38
LIME1-208ENST00000493265 ATRNO75882 1429 aa23.68■■□□□ 1.38
LIME1-208ENST00000493265 KTN1Q86UP2 1357 aaKnown RBP23.68■■□□□ 1.38
LIME1-208ENST00000493265 FNBP4Q8N3X1 1017 aaPredicted RBP23.68■■□□□ 1.38
LIME1-208ENST00000493265 CD163L1Q9NR16 1453 aa23.68■■□□□ 1.38
LIME1-208ENST00000493265 POLR3AO14802 1390 aaPredicted RBP23.67■■□□□ 1.38
LIME1-208ENST00000493265 ANKRD36BQ8N2N9 1353 aa23.66■■□□□ 1.38
LIME1-208ENST00000493265 KRT28Q7Z3Y7 464 aa23.66■■□□□ 1.38
LIME1-208ENST00000493265 AKAP12Q02952 1782 aa23.65■■□□□ 1.38
LIME1-208ENST00000493265 PAK3O75914 559 aaPredicted RBP23.65■■□□□ 1.38
LIME1-208ENST00000493265 CPSF1Q10570 1443 aaKnown RBP23.65■■□□□ 1.38
LIME1-208ENST00000493265 ZNF692Q9BU19 519 aaPredicted RBP23.64■■□□□ 1.37
LIME1-208ENST00000493265 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.63■■□□□ 1.37
LIME1-208ENST00000493265 CARD14Q9BXL6 1004 aa23.63■■□□□ 1.37
LIME1-208ENST00000493265 BCL9LQ86UU0 1499 aa23.62■■□□□ 1.37
LIME1-208ENST00000493265 USP6P35125 1406 aa23.62■■□□□ 1.37
LIME1-208ENST00000493265 NSD3Q9BZ95 1437 aa23.61■■□□□ 1.37
LIME1-208ENST00000493265 CNGB1Q14028 1251 aaPredicted RBP23.61■■□□□ 1.37
LIME1-208ENST00000493265 LMOD2Q6P5Q4 547 aa23.61■■□□□ 1.37
LIME1-208ENST00000493265 MON2Q7Z3U7 1717 aa23.61■■□□□ 1.37
LIME1-208ENST00000493265 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.59■■□□□ 1.37
LIME1-208ENST00000493265 PLEKHG5O94827 1062 aa23.59■■□□□ 1.37
LIME1-208ENST00000493265 KNSTRNQ9Y448 316 aa23.58■■□□□ 1.37
LIME1-208ENST00000493265 EDC4Q6P2E9 1401 aaKnown RBP23.58■■□□□ 1.36
LIME1-208ENST00000493265 TTC21BQ7Z4L5 1316 aa23.58■■□□□ 1.36
LIME1-208ENST00000493265 EP400Q96L91 3159 aa23.57■■□□□ 1.36
LIME1-208ENST00000493265 NUTM2GQ5VZR2 741 aa23.56■■□□□ 1.36
LIME1-208ENST00000493265 GJD4Q96KN9 370 aaPredicted RBP23.55■■□□□ 1.36
LIME1-208ENST00000493265 NRKQ7Z2Y5 1582 aa23.55■■□□□ 1.36
LIME1-208ENST00000493265 TRPM3Q9HCF6 1732 aaPredicted RBP23.54■■□□□ 1.36
LIME1-208ENST00000493265 NME9Q86XW9 330 aa23.54■■□□□ 1.36
LIME1-208ENST00000493265 SPATA31A3Q5VYP0 1347 aa23.54■■□□□ 1.36
LIME1-208ENST00000493265 GLI3P10071 1580 aa23.53■■□□□ 1.36
LIME1-208ENST00000493265 SSH2Q76I76 1423 aa23.53■■□□□ 1.36
LIME1-208ENST00000493265 ABTB2Q8N961 1025 aa23.53■■□□□ 1.36
LIME1-208ENST00000493265 ZRANB1Q9UGI0 708 aa23.53■■□□□ 1.36
LIME1-208ENST00000493265 PER1O15534 1290 aaPredicted RBP23.52■■□□□ 1.36
LIME1-208ENST00000493265 SBNO1A3KN83 1393 aa23.52■■□□□ 1.36
LIME1-208ENST00000493265 TNS3Q68CZ2 1445 aa23.51■■□□□ 1.35
LIME1-208ENST00000493265 SLIT2O94813 1529 aa23.51■■□□□ 1.35
LIME1-208ENST00000493265 GGNBP2Q9H3C7 697 aa23.51■■□□□ 1.35
LIME1-208ENST00000493265 CGNL1Q0VF96 1302 aa23.51■■□□□ 1.35
LIME1-208ENST00000493265 TTC21AQ8NDW8 1320 aa23.51■■□□□ 1.35
LIME1-208ENST00000493265 BRD4O60885 1362 aaPredicted RBP23.51■■□□□ 1.35
LIME1-208ENST00000493265 BRWD3Q6RI45 1802 aa23.5■■□□□ 1.35
LIME1-208ENST00000493265 CC2D1BQ5T0F9 858 aaKnown RBP23.5■■□□□ 1.35
LIME1-208ENST00000493265 UNC5CLQ8IV45 518 aa23.5■■□□□ 1.35
LIME1-208ENST00000493265 PLCH1Q4KWH8 1693 aa23.49■■□□□ 1.35
LIME1-208ENST00000493265 NLRP6P59044 892 aa23.49■■□□□ 1.35
LIME1-208ENST00000493265 ABCA3Q99758 1704 aa23.49■■□□□ 1.35
LIME1-208ENST00000493265 SRCAPQ6ZRS2 3230 aa23.48■■□□□ 1.35
LIME1-208ENST00000493265 PIK3C2AO00443 1686 aa23.48■■□□□ 1.35
LIME1-208ENST00000493265 KIF20BQ96Q89 1820 aa23.48■■□□□ 1.35
LIME1-208ENST00000493265 FYB1O15117 783 aa23.48■■□□□ 1.35
LIME1-208ENST00000493265 HAP1P54257 671 aaPredicted RBP23.48■■□□□ 1.35
LIME1-208ENST00000493265 ALS2Q96Q42 1657 aa23.47■■□□□ 1.35
LIME1-208ENST00000493265 AMER1Q5JTC6 1135 aaPredicted RBP23.46■■□□□ 1.35
LIME1-208ENST00000493265 CABLES1Q8TDN4 633 aa23.46■■□□□ 1.35
LIME1-208ENST00000493265 ARHGEF10O15013 1369 aa23.45■■□□□ 1.34
LIME1-208ENST00000493265 SOX12O15370 315 aa23.45■■□□□ 1.34
LIME1-208ENST00000493265 CCDC125Q86Z20 511 aa23.45■■□□□ 1.34
LIME1-208ENST00000493265 COG3Q96JB2 828 aa23.45■■□□□ 1.34
LIME1-208ENST00000493265 NLRP13Q86W25 1043 aa23.44■■□□□ 1.34
LIME1-208ENST00000493265 NWD2Q9ULI1 1742 aa23.43■■□□□ 1.34
LIME1-208ENST00000493265 TNNT2P45379 298 aaPredicted RBP23.42■■□□□ 1.34
LIME1-208ENST00000493265 MORC1Q86VD1 984 aa23.42■■□□□ 1.34
LIME1-208ENST00000493265 CCDC9Q9Y3X0 531 aaKnown RBP23.4■■□□□ 1.34
LIME1-208ENST00000493265 BLMP54132 1417 aaPredicted RBP23.4■■□□□ 1.34
LIME1-208ENST00000493265 NSD2O96028 1365 aa23.4■■□□□ 1.34
LIME1-208ENST00000493265 USP31Q70CQ4 1352 aa23.39■■□□□ 1.33
LIME1-208ENST00000493265 DIEXFQ68CQ4 756 aaKnown RBP23.38■■□□□ 1.33
LIME1-208ENST00000493265 SEPT12Q8IYM1 358 aa23.38■■□□□ 1.33
LIME1-208ENST00000493265 OVOS2A0A0J9YW53 1432 aa23.38■■□□□ 1.33
LIME1-208ENST00000493265 OVOS2Q6IE36 1432 aa23.38■■□□□ 1.33
LIME1-208ENST00000493265 ANKRD26Q9UPS8 1709 aa23.37■■□□□ 1.33
LIME1-208ENST00000493265 ZBTB7CA1YPR0 619 aa23.37■■□□□ 1.33
LIME1-208ENST00000493265 VPS72Q15906 364 aa23.37■■□□□ 1.33
LIME1-208ENST00000493265 FBLN1P23142 703 aa23.36■■□□□ 1.33
LIME1-208ENST00000493265 DEFB132Q7Z7B7 95 aa23.35■■□□□ 1.33
LIME1-208ENST00000493265 NPC1L1Q9UHC9 1359 aa23.35■■□□□ 1.33
LIME1-208ENST00000493265 USP19O94966 1318 aa23.34■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms