RNA–Protein interactions for RNA: ENST00000492657.5

PRAME-213, Transcript of preferentially expressed antigen in melanoma, humanhuman

TSL 1 (best)

Gene PRAME, Length 2,831 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAME-213ENST00000492657 PLEKHF1Q96S99 279 aa16.63■□□□□ 0.25
PRAME-213ENST00000492657 SPATA31D1Q6ZQQ2 1576 aa16.62■□□□□ 0.25
PRAME-213ENST00000492657 PDE3AQ14432 1141 aa16.62■□□□□ 0.25
PRAME-213ENST00000492657 TXNDC2Q86VQ3 553 aa16.62■□□□□ 0.25
PRAME-213ENST00000492657 PPM1GO15355 546 aaPredicted RBP16.62■□□□□ 0.25
PRAME-213ENST00000492657 ESF1Q9H501 851 aaKnown RBP16.62■□□□□ 0.25
PRAME-213ENST00000492657 METP08581 1390 aa16.61■□□□□ 0.25
PRAME-213ENST00000492657 ZMYM3Q14202 1370 aa16.61■□□□□ 0.25
PRAME-213ENST00000492657 RLBP1P12271 317 aa16.61■□□□□ 0.25
PRAME-213ENST00000492657 NCKAP5LQ9HCH0 1330 aa16.61■□□□□ 0.25
PRAME-213ENST00000492657 TMPOP42166 694 aaKnown RBP16.6■□□□□ 0.25
PRAME-213ENST00000492657 COL3A1P02461 1466 aaPredicted RBP16.6■□□□□ 0.25
PRAME-213ENST00000492657 CLUAP1Q96AJ1 413 aa16.6■□□□□ 0.25
PRAME-213ENST00000492657 TRIM35Q9UPQ4 493 aa16.6■□□□□ 0.25
PRAME-213ENST00000492657 NEFMP07197 916 aa16.59■□□□□ 0.25
PRAME-213ENST00000492657 DIAPH1O60610 1272 aaKnown RBP16.59■□□□□ 0.25
PRAME-213ENST00000492657 ZRANB1Q9UGI0 708 aa16.59■□□□□ 0.25
PRAME-213ENST00000492657 MYH16Q9H6N6 1097 aa16.58■□□□□ 0.25
PRAME-213ENST00000492657 KIF13AQ9H1H9 1805 aa16.58■□□□□ 0.24
PRAME-213ENST00000492657 SETD1AO15047 1707 aaKnown RBP16.57■□□□□ 0.24
PRAME-213ENST00000492657 MAPK8IP3Q9UPT6 1336 aa16.57■□□□□ 0.24
PRAME-213ENST00000492657 EXOSC9Q06265 439 aaKnown RBP16.56■□□□□ 0.24
PRAME-213ENST00000492657 POLKQ9UBT6 870 aa16.56■□□□□ 0.24
PRAME-213ENST00000492657 ANKRD26Q9UPS8 1709 aa16.56■□□□□ 0.24
PRAME-213ENST00000492657 WASLO00401 505 aaPredicted RBP16.56■□□□□ 0.24
PRAME-213ENST00000492657 RIPK4P57078 832 aa16.56■□□□□ 0.24
PRAME-213ENST00000492657 NME9Q86XW9 330 aa16.56■□□□□ 0.24
PRAME-213ENST00000492657 ADGRB2O60241 1585 aa16.56■□□□□ 0.24
PRAME-213ENST00000492657 MED14O60244 1454 aa16.55■□□□□ 0.24
PRAME-213ENST00000492657 C8orf34Q49A92 452 aa16.55■□□□□ 0.24
PRAME-213ENST00000492657 NRXN3Q9Y4C0 1643 aa16.55■□□□□ 0.24
PRAME-213ENST00000492657 DLC1Q96QB1 1528 aa16.55■□□□□ 0.24
PRAME-213ENST00000492657 PCDHB15Q9Y5E8 787 aa16.55■□□□□ 0.24
PRAME-213ENST00000492657 PNPLA6Q8IY17 1366 aa16.54■□□□□ 0.24
PRAME-213ENST00000492657 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.54■□□□□ 0.24
PRAME-213ENST00000492657 EMILIN1Q9Y6C2 1016 aa16.54■□□□□ 0.24
PRAME-213ENST00000492657 FAM161AQ3B820 660 aa16.53■□□□□ 0.24
PRAME-213ENST00000492657 NUDT16Q96DE0 195 aaKnown RBP16.53■□□□□ 0.24
PRAME-213ENST00000492657 KIF20BQ96Q89 1820 aa16.53■□□□□ 0.24
PRAME-213ENST00000492657 HMOX1P09601 288 aa16.52■□□□□ 0.24
PRAME-213ENST00000492657 NCBP3Q53F19 620 aaKnown RBP16.52■□□□□ 0.24
PRAME-213ENST00000492657 PPIP5K1Q6PFW1 1433 aa16.52■□□□□ 0.24
PRAME-213ENST00000492657 SLC4A3P48751 1232 aa16.52■□□□□ 0.23
PRAME-213ENST00000492657 PLPPR3Q6T4P5 718 aa16.52■□□□□ 0.23
PRAME-213ENST00000492657 BRPF3Q9ULD4 1205 aa16.52■□□□□ 0.23
PRAME-213ENST00000492657 TNRQ92752 1358 aa16.51■□□□□ 0.23
PRAME-213ENST00000492657 PRKAR2BP31323 418 aa16.51■□□□□ 0.23
PRAME-213ENST00000492657 CEBPAP49715 358 aaPredicted RBP16.51■□□□□ 0.23
PRAME-213ENST00000492657 MAP2P11137 1827 aaKnown RBP16.51■□□□□ 0.23
PRAME-213ENST00000492657 PHACTR3Q96KR7 559 aa16.51■□□□□ 0.23
PRAME-213ENST00000492657 SSH1Q8WYL5 1049 aa16.5■□□□□ 0.23
PRAME-213ENST00000492657 SMC4Q9NTJ3 1288 aa16.5■□□□□ 0.23
PRAME-213ENST00000492657 ATP7BP35670 1465 aa16.5■□□□□ 0.23
PRAME-213ENST00000492657 NUTM2FA1L443 756 aa16.5■□□□□ 0.23
PRAME-213ENST00000492657 RSPH6AQ9H0K4 717 aa16.49■□□□□ 0.23
PRAME-213ENST00000492657 CPSF1Q10570 1443 aaKnown RBP16.49■□□□□ 0.23
PRAME-213ENST00000492657 FCHSD2O94868 740 aa16.49■□□□□ 0.23
PRAME-213ENST00000492657 ZKSCAN2Q63HK3 967 aa16.49■□□□□ 0.23
PRAME-213ENST00000492657 THUMPD2Q9BTF0 503 aaKnown RBP16.49■□□□□ 0.23
PRAME-213ENST00000492657 RRS1Q15050 365 aaKnown RBP16.48■□□□□ 0.23
PRAME-213ENST00000492657 CCDC61Q9Y6R9 512 aa16.48■□□□□ 0.23
PRAME-213ENST00000492657 PRR36Q9H6K5 1346 aa16.48■□□□□ 0.23
PRAME-213ENST00000492657 LTKP29376 864 aa16.48■□□□□ 0.23
PRAME-213ENST00000492657 TMEM2Q9UHN6 1383 aa16.47■□□□□ 0.23
PRAME-213ENST00000492657 HDGFP51858 240 aaKnown RBP16.46■□□□□ 0.23
PRAME-213ENST00000492657 MVPQ14764 893 aaKnown RBP16.46■□□□□ 0.23
PRAME-213ENST00000492657 DZIP1LQ8IYY4 767 aaKnown RBP16.46■□□□□ 0.23
PRAME-213ENST00000492657 CPS1P31327 1500 aa16.46■□□□□ 0.23
PRAME-213ENST00000492657 FTSJ3Q8IY81 847 aaKnown RBP16.46■□□□□ 0.23
PRAME-213ENST00000492657 ROBO2Q9HCK4 1378 aa16.46■□□□□ 0.23
PRAME-213ENST00000492657 EDC4Q6P2E9 1401 aaKnown RBP16.46■□□□□ 0.23
PRAME-213ENST00000492657 LRRC7Q96NW7 1537 aa16.46■□□□□ 0.23
PRAME-213ENST00000492657 TRIM27P14373 513 aa16.46■□□□□ 0.22
PRAME-213ENST00000492657 NOB1Q9ULX3 412 aaKnown RBP16.46■□□□□ 0.22
PRAME-213ENST00000492657 IL13P35225 146 aa16.45■□□□□ 0.22
PRAME-213ENST00000492657 SLC26A8Q96RN1 970 aa16.45■□□□□ 0.22
PRAME-213ENST00000492657 PNNQ9H307 717 aaKnown RBP16.45■□□□□ 0.22
PRAME-213ENST00000492657 IL16Q14005 1332 aa16.44■□□□□ 0.22
PRAME-213ENST00000492657 PMFBP1Q8TBY8 1022 aa16.44■□□□□ 0.22
PRAME-213ENST00000492657 COG3Q96JB2 828 aa16.44■□□□□ 0.22
PRAME-213ENST00000492657 EIF5BO60841 1220 aaKnown RBP16.44■□□□□ 0.22
PRAME-213ENST00000492657 PDZRN3Q9UPQ7 1066 aa16.44■□□□□ 0.22
PRAME-213ENST00000492657 CT47B1P0C2W7 299 aaPredicted RBP16.43■□□□□ 0.22
PRAME-213ENST00000492657 FAM135BQ49AJ0 1406 aa16.43■□□□□ 0.22
PRAME-213ENST00000492657 SEC24BO95487 1268 aa16.43■□□□□ 0.22
PRAME-213ENST00000492657 SIRT1Q96EB6 747 aa16.43■□□□□ 0.22
PRAME-213ENST00000492657 ADAMTS13Q76LX8 1427 aa16.43■□□□□ 0.22
PRAME-213ENST00000492657 NFE2L2Q16236 605 aa16.42■□□□□ 0.22
PRAME-213ENST00000492657 UBR1Q8IWV7 1749 aa16.42■□□□□ 0.22
PRAME-213ENST00000492657 TECPR2O15040 1411 aa16.42■□□□□ 0.22
PRAME-213ENST00000492657 ATF7IPQ6VMQ6 1270 aa16.41■□□□□ 0.22
PRAME-213ENST00000492657 ITPRIPQ8IWB1 547 aa16.41■□□□□ 0.22
PRAME-213ENST00000492657 DDRGK1Q96HY6 314 aa16.41■□□□□ 0.22
PRAME-213ENST00000492657 RWDD1Q9H446 243 aaPredicted RBP16.41■□□□□ 0.22
PRAME-213ENST00000492657 CDC42BPGQ6DT37 1551 aa16.4■□□□□ 0.22
PRAME-213ENST00000492657 ELL2O00472 640 aaPredicted RBP16.4■□□□□ 0.22
PRAME-213ENST00000492657 AAMPQ13685 434 aa16.4■□□□□ 0.22
PRAME-213ENST00000492657 TMEM57Q8N5G2 664 aa16.4■□□□□ 0.22
PRAME-213ENST00000492657 TSPYL6Q8N831 410 aa16.39■□□□□ 0.21
PRAME-213ENST00000492657 FAM83GA6ND36 823 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms