RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 ZNF335Q9H4Z2 1342 aaPredicted RBP13.11□□□□□ -0.31
USP54-214ENST00000492357 C1orf167Q5SNV9 1468 aa13.1□□□□□ -0.31
USP54-214ENST00000492357 RGPD8O14715 1765 aaPredicted RBP13.1□□□□□ -0.31
USP54-214ENST00000492357 NLRP13Q86W25 1043 aa13.1□□□□□ -0.31
USP54-214ENST00000492357 RNF216Q9NWF9 866 aaPredicted RBP13.1□□□□□ -0.31
USP54-214ENST00000492357 PHF8Q9UPP1 1060 aa13.09□□□□□ -0.31
USP54-214ENST00000492357 ACEP12821 1306 aa13.09□□□□□ -0.31
USP54-214ENST00000492357 INSRP06213 1382 aa13.08□□□□□ -0.31
USP54-214ENST00000492357 USP31Q70CQ4 1352 aa13.07□□□□□ -0.32
USP54-214ENST00000492357 NGDNQ8NEJ9 315 aaKnown RBP13.06□□□□□ -0.32
USP54-214ENST00000492357 AATKQ6ZMQ8 1374 aa13.06□□□□□ -0.32
USP54-214ENST00000492357 FYB1O15117 783 aa13.05□□□□□ -0.32
USP54-214ENST00000492357 TTC21BQ7Z4L5 1316 aa13.05□□□□□ -0.32
USP54-214ENST00000492357 MORC1Q86VD1 984 aa13.04□□□□□ -0.32
USP54-214ENST00000492357 NPHP3Q7Z494 1330 aa13.04□□□□□ -0.32
USP54-214ENST00000492357 OVOS2A0A0J9YW53 1432 aa13.04□□□□□ -0.32
USP54-214ENST00000492357 OVOS2Q6IE36 1432 aa13.04□□□□□ -0.32
USP54-214ENST00000492357 ESCO1Q5FWF5 840 aa13.03□□□□□ -0.32
USP54-214ENST00000492357 CC2D1BQ5T0F9 858 aaKnown RBP13.03□□□□□ -0.32
USP54-214ENST00000492357 SBNO1A3KN83 1393 aa13.03□□□□□ -0.32
USP54-214ENST00000492357 KIF24Q5T7B8 1368 aa13.03□□□□□ -0.32
USP54-214ENST00000492357 SMG6Q86US8 1419 aaKnown RBP13.03□□□□□ -0.32
USP54-214ENST00000492357 TRPM3Q9HCF6 1732 aaPredicted RBP13.02□□□□□ -0.32
USP54-214ENST00000492357 PPP2R1AP30153 589 aa13.02□□□□□ -0.33
USP54-214ENST00000492357 PSME1Q06323 249 aa13.02□□□□□ -0.33
USP54-214ENST00000492357 COG3Q96JB2 828 aa13.02□□□□□ -0.33
USP54-214ENST00000492357 SLAIN2Q9P270 581 aa13.01□□□□□ -0.33
USP54-214ENST00000492357 PIK3C2AO00443 1686 aa13.01□□□□□ -0.33
USP54-214ENST00000492357 NHSL1Q5SYE7 1610 aa13□□□□□ -0.33
USP54-214ENST00000492357 NUTM2FA1L443 756 aa13□□□□□ -0.33
USP54-214ENST00000492357 HOXD11P31277 338 aaPredicted RBP13□□□□□ -0.33
USP54-214ENST00000492357 PMFBP1Q8TBY8 1022 aa13□□□□□ -0.33
USP54-214ENST00000492357 MRS2Q9HD23 443 aa13□□□□□ -0.33
USP54-214ENST00000492357 CFAP53Q96M91 514 aa12.99□□□□□ -0.33
USP54-214ENST00000492357 ALS2Q96Q42 1657 aa12.99□□□□□ -0.33
USP54-214ENST00000492357 CDK12Q9NYV4 1490 aaPredicted RBP12.98□□□□□ -0.33
USP54-214ENST00000492357 PNPLA6Q8IY17 1366 aa12.98□□□□□ -0.33
USP54-214ENST00000492357 RBM33Q96EV2 1170 aaKnown RBP12.98□□□□□ -0.33
USP54-214ENST00000492357 ORAI2Q96SN7 254 aa12.98□□□□□ -0.33
USP54-214ENST00000492357 PHRF1Q9P1Y6 1649 aaKnown RBP12.98□□□□□ -0.33
USP54-214ENST00000492357 MED1Q15648 1581 aaPredicted RBP12.98□□□□□ -0.33
USP54-214ENST00000492357 PXDNQ92626 1479 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 ARHGEF10O15013 1369 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.97□□□□□ -0.33
USP54-214ENST00000492357 KCNH5Q8NCM2 988 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 GGNBP2Q9H3C7 697 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 AHDC1Q5TGY3 1603 aaPredicted RBP12.97□□□□□ -0.33
USP54-214ENST00000492357 SLIT3O75094 1523 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 ABCC6O95255 1503 aa12.97□□□□□ -0.33
USP54-214ENST00000492357 MARF1Q9Y4F3 1742 aaKnown RBP12.96□□□□□ -0.33
USP54-214ENST00000492357 BRINP3Q76B58 766 aa12.96□□□□□ -0.33
USP54-214ENST00000492357 PNISRQ8TF01 805 aaKnown RBP12.96□□□□□ -0.33
USP54-214ENST00000492357 TNS3Q68CZ2 1445 aa12.96□□□□□ -0.34
USP54-214ENST00000492357 RTL1A6NKG5 1358 aa12.95□□□□□ -0.34
USP54-214ENST00000492357 SOS2Q07890 1332 aaPredicted RBP12.95□□□□□ -0.34
USP54-214ENST00000492357 KRT28Q7Z3Y7 464 aa12.95□□□□□ -0.34
USP54-214ENST00000492357 NME9Q86XW9 330 aa12.95□□□□□ -0.34
USP54-214ENST00000492357 MAP2P11137 1827 aaKnown RBP12.95□□□□□ -0.34
USP54-214ENST00000492357 USP19O94966 1318 aa12.94□□□□□ -0.34
USP54-214ENST00000492357 FOXO3O43524 673 aa12.94□□□□□ -0.34
USP54-214ENST00000492357 TOM1O60784 492 aa12.94□□□□□ -0.34
USP54-214ENST00000492357 NGEFQ8N5V2 710 aa12.94□□□□□ -0.34
USP54-214ENST00000492357 ABTB2Q8N961 1025 aa12.94□□□□□ -0.34
USP54-214ENST00000492357 NLRP6P59044 892 aa12.93□□□□□ -0.34
USP54-214ENST00000492357 SPATA31A3Q5VYP0 1347 aa12.92□□□□□ -0.34
USP54-214ENST00000492357 COL3A1P02461 1466 aaPredicted RBP12.92□□□□□ -0.34
USP54-214ENST00000492357 MTHFSP49914 203 aa12.92□□□□□ -0.34
USP54-214ENST00000492357 ROBO1Q9Y6N7 1651 aa12.92□□□□□ -0.34
USP54-214ENST00000492357 NFAT5O94916 1531 aa12.92□□□□□ -0.34
USP54-214ENST00000492357 POLKQ9UBT6 870 aa12.91□□□□□ -0.34
USP54-214ENST00000492357 NUDCQ9Y266 331 aa12.91□□□□□ -0.34
USP54-214ENST00000492357 SHPRHQ149N8 1683 aa12.91□□□□□ -0.34
USP54-214ENST00000492357 FLT4P35916 1363 aa12.91□□□□□ -0.34
USP54-214ENST00000492357 CRYBG1Q9Y4K1 1723 aa12.91□□□□□ -0.34
USP54-214ENST00000492357 BLMP54132 1417 aaPredicted RBP12.9□□□□□ -0.34
USP54-214ENST00000492357 WDR43Q15061 677 aaKnown RBP eCLIP12.9□□□□□ -0.34
USP54-214ENST00000492357 PNNQ9H307 717 aaKnown RBP12.9□□□□□ -0.34
USP54-214ENST00000492357 PAK3O75914 559 aaPredicted RBP12.89□□□□□ -0.35
USP54-214ENST00000492357 CCDC184Q52MB2 194 aa12.89□□□□□ -0.35
USP54-214ENST00000492357 COL22A1Q8NFW1 1626 aaPredicted RBP12.88□□□□□ -0.35
USP54-214ENST00000492357 CPDO75976 1380 aa12.88□□□□□ -0.35
USP54-214ENST00000492357 PLEKHG2Q9H7P9 1386 aa12.88□□□□□ -0.35
USP54-214ENST00000492357 DIAPH1O60610 1272 aaKnown RBP12.87□□□□□ -0.35
USP54-214ENST00000492357 LRRC59Q96AG4 307 aaKnown RBP12.87□□□□□ -0.35
USP54-214ENST00000492357 LTN1O94822 1766 aa12.86□□□□□ -0.35
USP54-214ENST00000492357 CNGB1Q14028 1251 aaPredicted RBP12.86□□□□□ -0.35
USP54-214ENST00000492357 CERKQ8TCT0 537 aa12.86□□□□□ -0.35
USP54-214ENST00000492357 GCP02774 474 aa12.85□□□□□ -0.35
USP54-214ENST00000492357 TNNT2P45379 298 aaPredicted RBP12.85□□□□□ -0.35
USP54-214ENST00000492357 FAM9BQ8IZU0 186 aa12.85□□□□□ -0.35
USP54-214ENST00000492357 ZRANB1Q9UGI0 708 aa12.85□□□□□ -0.35
USP54-214ENST00000492357 MAP3K19Q56UN5 1328 aa12.85□□□□□ -0.35
USP54-214ENST00000492357 PEAK1Q9H792 1746 aa12.85□□□□□ -0.35
USP54-214ENST00000492357 COL16A1Q07092 1604 aaPredicted RBP12.84□□□□□ -0.35
USP54-214ENST00000492357 FAM208AQ9UK61 1670 aaKnown RBP12.84□□□□□ -0.35
USP54-214ENST00000492357 RGPD1P0DJD0 1748 aa12.84□□□□□ -0.35
USP54-214ENST00000492357 ABCA3Q99758 1704 aa12.84□□□□□ -0.35
USP54-214ENST00000492357 ZBED9Q6R2W3 1325 aa12.84□□□□□ -0.35
USP54-214ENST00000492357 PHLPP1O60346 1717 aa12.83□□□□□ -0.36
USP54-214ENST00000492357 FCHSD2O94868 740 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms